Understanding the mechanisms behind landscape diversity changes on islands, particularly due to historical human interventions, remains a critical challenge in paleoecology. This study addresses this gap by utilizing over 160 pollen samples combined with multi-proxy data and historical records to reconstruct the late-Holocene ecological and environmental dynamics of Weizhou Island, China, over the last 1400 years. Our analyses reveal the evolution of ecosystem diversity and vegetation succession amid climatic fluctuations and anthropogenic pressures, identifying four distinct phases of transformation: (1) A warm and dry climate from 1400 to 850 cal yr BP fostering a savanna ecosystem; (2) A shift to a North subtropical seasonal rainforest under a more humid climate between 850 and 210 cal yr BP, with increased vegetation diversity; (3) The initiation of agriculture and aquaculture, along with a cooler climate from 210 cal yr BP to 1970 CE, marked by human-induced landscape alterations; and (4) A significant transformation from a once-diverse ecosystem to artificial protective forests from 1970 CE to the present. By correlating environmental indicators with historical accounts across eight Chinese dynasties, our study provides detailed insights into the climatic and human factors shaping the island's history. The findings demonstrate that while climatic shifts are primary drivers of biodiversity changes, anthropogenic disturbances also play a significant role. This research underscores the resilience of ecosystems to both climatic and human pressures and emphasizes the importance of integrating historical context into environmental studies.