The fate of microplastic particles (MP) in exposure experiments is mostly unclear. We measured the recovery of polystyrene (PS) microbeads, which were applied in various concentrations from 0.07 to 47.47 beads/ml, from the different compartments of an experimental system with mussels (Mytilus spp.). At the end of the experiment, we detected a significant loss of MP indicating that the mussels were exposed to less particles than intended. If such a discrepancy remains un-recognized by the experimenter, observed effects are related to an inaccurate particle concentration. Additionally, we observed reduced clearance rates of the mussels in the presence of MP and the effect size increased with increasing particle concentration. This effect was more pronounced in mussels that had recently spawned than in mussels that still had mature gonads. This is a hint that effects of MP may depend on the reproductive status of an organism.