Increasing Habitat Complexity Research Articles

Fish Distribution and Habitat Complexity on Banks of the Strait of Sicily (Central Mediterranean Sea) from Remotely-Operated Vehicle (ROV) Explorations

The Strait of Sicily was recognized internationally as an “Ecologically or Biologically Significant Area” by the Contracting Parties of the Convention on Biological Diversity in 2014. However, basic aspects of its fish diversity are still unknown and most of the information comes from traditional trawl surveys. This paper provides the first detailed description, using a Remotely Operated Vehicle (ROV), of the composition and depth distribution of the demersal fish assemblages found on banks of the Strait of Sicily and the related habitat complexity from 35 to 240 m depth. A total of 24 families and 52 fish species were recorded and depth was consistently associated with a significant proportion of the variation of the fish assemblage. The highest species richness was observed at the shallowest depth layer (0–50 m) and significantly decreased, remaining almost constant, in deeper layers. Similarly the highest abundance was recorded at 0–50 m, where C. julis represented the most abundant species, and decreased progressively throughout the whole depth gradient. Although the factor habitat complexity explained only a small proportion of the fish assemblage variation, significant differences among different degrees of habitat complexity were observed, together with a general positive trend for species richness and abundance with increasing habitat complexity. The ROV also allowed us to observe some rare or poorly known fish species such as Scorpaenodes arenai, Hyporthodus haifensis, Myliobatis aquila, Gadella maraldi, Epinephelus caninus and Lappanella fasciata. These findings show that banks serve as reservoirs for fish abundance and biodiversity and that immediate environmental conservation and management actions represent a priority not only for Italy but also for other countries which share the same area.

Relationships between stream ecosystem properties and landscape composition at multiple spatial scales along a heavily polluted stream in China: Implications for restoration

Restoration in seriously polluted streams has become an urgent issue in developing countries. In this study, we attempted to propose an effective restoration approach in a heavily polluted stream in China with the aid of relationships between ecosystem properties and landscape across multiple scales. Land cover and physical geometry at a fine gradient of spatial scales (doubling 60–960m and whole catchment) were included as landscape predictive variables, while water quality and macroinvertebrate were involved as ecosystem response variables. The strong relationship between the stream properties and surrounding landscape indicated the stream still maintain its resilience, that is, the capacity to recover from disturbance without changing its fundamental functions and state, even undergoing severe pollution. Further, the primary predictors for water quality were agriculture and urban land, with most effective scale at local 60m buffer, but independence tests pointed out most correlations between agriculture and water quality were attributed to urban land and spatial covariation. No direct association was detected between macroinvertebrate and surrounding land cover at all scales, but macroinvertebrate exhibited significant relationship with physical variables at in-stream habitat scale. Overall, it was quite possible for this heavily polluted stream to go back to its initial health state if appropriate restorations were taken. The extent and intensity of riparian urbanizations were high priority factors when performing water quality improvement, and increasing habitat complexity and heterogeneity at in-stream scale was crucial for increasing macroinvertebrates diversity.

Sponges as “living hotels” in Mediterranean marine caves

Although sponges constitute the dominant sessile organisms in marine caves, their functional role as ecosystem engineers has received little attention in this habitat type. In this study the associated macrofauna of the massive/tubular ecosystem-engineering sponges Agelas oroides and Aplysina aerophoba was studied across distinct ecological zones of two eastern Mediterranean caves. Our results revealed that the examined sponges supported a considerable associated macrofauna. A total of 86 associated taxa were found, including species reported for the first time as sponge symbionts and typical cave dwellers. Crustaceans predominated in terms of abundance but polychaetes showed the highest number of taxa. A clear differentiation was observed in the structure of the associated assemblage between the two sponges, attributed not only to the sponge species but also to differences in the surrounding environment. Density, diversity and the trophic structure of the sponge-associated macrofauna did not vary significantly along the horizontal axis of the surveyed caves. These findings suggest that sponges form a quite stable habitat, maintaining their functional role as ecosystem engineers across the studied marine caves and increasing habitat complexity in the impoverished inner dark cave sectors.

Biogeographic Variability in the Value of Mussel Beds as Ecosystem Engineers on South African Rocky Shores

Ecological engineers have important effects on biodiversity because they often increase habitat complexity and moderate environmental conditions, implying that their influence on associated fauna will vary across gradients of environmental stress. To test this, we quantified the positive effects of mussel beds on associated benthic communities around the entire South African coastline (~3500 km). We hypothesised that molluscan assemblages would show stronger affinities to the presence of mussel beds with increasing levels of heat-stress. Biomimetic loggers used to characterise thermal properties within and outside mussel beds found that solitary mussels experienced significantly greater daily maximum temperatures than mussels within beds across all locations. However, the magnitude of such differences did not appear to vary with latitude or time of year but rather was strongly influenced by biogeographic region. Differences in the abundance, diversity and community structure of molluscs within and outside mussel beds showed similar biogeographic variability, with differences in total molluscan abundances being most pronounced along the cool temperate west coast during summer and least pronounced along the warm temperate south coast during winter. Greater affinity of molluscan assemblages for mussel beds within cooler biogeographic regions suggests that evolutionary history and/or other abiotic factors may be the primary cause for the stronger influence of mussel beds on the west coast. This highlights the complex, context-dependant nature of ecosystem engineering and the varying degrees to which associated organisms affiliate with these biogenic structures. Such findings have important implications for the use of ecosystem engineers as umbrella species in ecological conservation.

The Impact of Tropical Peat Fire on Termite Assemblage in Sumatra, Indonesia: Reduced Complexity of Community Structure and Survival Strategies.

Tropical peat swamp forests in Southeast Asia account for approximately 72% of global peatland. However, extensive forest exploitation following peat drainage for agricultural expansion has been leading to catastrophic peat fires. In this study, we compared the termite assemblage in burnt and unburnt peats in Sumatra, Indonesia. We also identified which taxonomic group is particularly resistant to fire disturbance and the traits that correlate with its persistence in fire-impacted peatlands. Overall, the termite species richness in fire-impacted peats was up to 40% lower than that of the total species found in peat swamp forests. Although the estimated species richness values in fire-impacted peats and peat swamp forests were not significantly different, fire changed termite community structure significantly. Only termites of the family Rhinotermitidae survived in the fire event, whereas members of the Termitidae that were reportedly resilient to fire and open habitats elsewhere disappeared during the fire events. The rhinotermitids found in the burnt sites were exclusively wood nesters. This suggests that the desiccation tolerance of termites in open habitat is not the simple underlying survival strategy, but tree branches and barks might have provided a refuge from heat during fire. The result also suggests that the high similarity in species composition in recently burnt peats and long burnt peats implies low species turnover. Thus, regardless of how much time had passed since the fire-impacted peats were abandoned or cultivated, the increase in habitat complexity did not favor colonization by the forest-dependent group.

Can increased structural complexity decrease the predation of an alien crayfish on a native fish?

Interactions between predators and their prey are influenced by the habitats they occupy. In freshwater ecosystems, submerged vegetation provides protection for prey compared to unvegetated substrata. Using submerged plants (Hydrilla verticillata) as a refuge for Chinese bitterling (Rhodeus sinensis), a native fish, we conducted a series of laboratory experiments to test the impact of structural complexity and prey density on predation rate. We found that the number of Chinese bitterling eaten by alien crayfish (Procambarus clarkii) decreased with the increasing structural complexity and increased with prey density. Similar reductions in predation rate with increased habitat complexity occurred at all three different prey densities. Our study indicates that structural complexity can decrease the crayfish predation on freshwater fishes.

Seasonal patterns in diet composition of adult shovelnose sturgeon in a free-flowing river

ABSTRACTThe relationship between seasonal diet composition of shovelnose sturgeon, Scaphirhynchus platorynchus (Rafinesque) and water discharge has not been described in large unimpounded rivers that are connected to their floodplains. We sampled adult shovelnose sturgeon from a commercially exploited population in the free-flowing Wabash River, Illinois/Indiana, USA to determine the seasonal variation in diet structure. Prey items were observed in a large proportion of individuals (97.8%), suggesting that appropriate prey taxa were widely available to shovelnose sturgeon throughout the year. Overall, Hydropsychidae, Chironomidae, Potamanthidae, and Elmidae were the most important prey taxa with winter, summer, and fall samples dominated by Hydropsychidae larvae (58.9%, 63.8%, and 73.7% by number, respectively) and spring samples dominated by Chironomidae larvae (85.9%). Remains of bony fish were observed in a few spring and winter samples. Fall and winter samples had the highest and lowest proportions of inorganic materials, respectively. Higher consumption rates were observed when prey availability coincided with precipitation events. Conservation efforts within mid-western Rivers should focus on increasing habitat complexity and hydrological connectivity within floodplains.

The uncertain role of diversity dependence in species diversification and the need to incorporate time-varying carrying capacities.

There is no agreement among palaeobiologists or biologists as to whether, or to what extent, there are limits on diversification and species numbers. Here, we posit that part of the disagreement stems from: (i) the lack of explicit criteria for defining the relevant species pools, which may be defined phylogenetically, ecologically or geographically; (ii) assumptions that must be made when extrapolating from population-level logistic growth to macro-evolutionary diversification; and (iii) too much emphasis being placed on fixed carrying capacities, rather than taking into account the opportunities for increased species richness on evolutionary timescales, for example, owing to increased biologically available energy, increased habitat complexity and the ability of many clades to better extract resources from the environment, or to broaden their resource base. Thus, we argue that a more effective way of assessing the evidence for and against the ideas of bound versus unbound diversification is through appropriate definition of the relevant species pools, and through explicit modelling of diversity-dependent diversification with time-varying carrying capacities. Here, we show that time-varying carrying capacities, either increases or decreases, can be accommodated through changing intrinsic diversification rates (diversity-independent effects), or changing the effects of crowding (diversity-dependent effects).

Habitat engineering by beaver benefits aquatic biodiversity and ecosystem processes in agricultural streams

Summary Small‐scale discontinuities, formed by accumulations of wood, are recognised as a key feature of functionally intact forested streams because they promote organic matter retention, increase habitat complexity and provide flow refugia. Re‐establishing such features in physically degraded streams is therefore a common priority for restoration schemes. Ecosystem engineering by beavers in the form of dam building might offer a natural mechanism for restoring degraded streams. Despite an increase in beaver reintroductions globally, the ecosystem engineering concept has rarely been applied to restoring biodiversity and ecosystem function, especially within degraded freshwater systems. By comparing multiple beaver‐modified and unmodified sites on headwater streams draining 13 ha of pastureland in eastern Scotland, U.K., we investigated if hydromorphological changes caused by reintroduced beavers (Castor fiber) translate into desirable biological responses when there is a long history of physical degradation and contraction of the regional species pool due to agricultural land use. Beaver modified in‐stream habitat by constructing 10 dams, thus creating a series of interconnected dam pools. Organic matter retention and aquatic plant biomass increased (7 and 20 fold higher respectively) in beaver ponds relative to unmodified channels, consistent with the lower fluctuation in stream stage observed below a series of dams. Growing season concentrations of extractable P and NO3 were on average 49% and 43% lower respectively below a series of dams than above, although colour and suspended solids concentrations increased. Macroinvertebrate samples from beaver‐modified habitats were less taxon rich (alpha diversity on average 27% lower) than those from unmodified stream habitat. However, due to significant compositional differences between beaver versus unmodified habitats, a composite sample from all habitats indicated increased richness at the landscape scale; gamma diversity was 28% higher on average than in the absence of beaver‐modified habitat. Feeding guild composition shifted from grazer/scraper and filter feeder dominance in unmodified habitats to shredder and collector‐gatherer dominance in beaver‐created habitats. Dam building by beaver in degraded environments can improve physical and biological diversity when viewed at a scale encompassing both modified and unmodified habitats. By restoring ecosystem processes locally, it may also offer wider scale benefits, including greater nutrient retention and flood attenuation. These benefits should be evaluated against evidence of any negative effects on land use or fisheries.

Application of computer-aided tomography techniques to visualize kelp holdfast structure reveals the importance of habitat complexity for supporting marine biodiversity

Ecosystem engineers that increase habitat complexity are keystone species in marine systems, increasing shelter and niche availability, and therefore biodiversity. For example, kelp holdfasts form intricate structures and host the largest number of organisms in kelp ecosystems. However, methods that quantify 3D habitat complexity have only seldom been used in marine habitats, and never in kelp holdfast communities. This study investigated the role of kelp holdfasts (Laminaria hyperborea) in supporting benthic faunal biodiversity. Computer-aided tomography (CT-) scanning was used to quantify the three-dimensional geometrical complexity of holdfasts, including volume, surface area and surface fractal dimension (FD). Additionally, the number of haptera, number of haptera per unit of volume, and age of kelps were estimated. These measurements were compared to faunal biodiversity and community structure, using partial least-squares regression and multivariate ordination. Holdfast volume explained most of the variance observed in biodiversity indices, however all other complexity measures also strongly contributed to the variance observed. Multivariate ordinations further revealed that surface area and haptera per unit of volume accounted for the patterns observed in faunal community structure. Using 3D image analysis, this study makes a strong contribution to elucidate quantitative mechanisms underlying the observed relationship between biodiversity and habitat complexity. Furthermore, the potential of CT-scanning as an ecological tool is demonstrated, and a methodology for its use in future similar studies is established. Such spatially resolved imager analysis could help identify structurally complex areas as biodiversity hotspots, and may support the prioritization of areas for conservation.

Islands as refuges for threatened species: multispecies translocation and evidence of species interactions four decades on

Australia has one of the worst mammal extinction rates in the world, with translocations to refuge locations increasingly being advocated to help address problems of species decline. Offshore islands can function as these refuges, removing species from threatening processes and providing a source of animals for reintroduction. Historically, the focus of many island translocations in Australia has been the conservation of a single species, with data on long-term translocation success and population dynamics after release generally lacking. Here we examine the results of a multispecies translocation onto Wedge Island, off the South Australian coast 30–40 years ago. Fewer than a dozen individuals of three species – southern hairy-nosed wombat (Lasiorhinus latifrons), black-footed rock-wallaby (Petrogale lateralis pearsonii), and brush-tailed bettong (Bettongia penicillata) – were released. All three species have shown substantial population increase and wombat activity across the island has increased exponentially with >700 burrows detected. Substantial levels of co-use of wombat burrows by rock-wallabies and bettongs were observed, providing clear evidence for interspecies interactions. Rock-wallabies showed a significant preference for wombat-active burrows (45% co-used), whereas bettongs showed a significant preference for wombat-inactive burrows (10% used). This study suggests that islands have significant potential for long-term threatened species conservation and that translocation of an ecosystem engineer may increase habitat complexity and help improve habitat suitability for multiple species and thus increase the overall conservation benefit.

Short‐term Costs and Benefits of Habitat Complexity for a Territorial Fish

AbstractAn increase in habitat complexity is thought to decrease visibility and the territory size of visually oriented animals. Hence, the addition of physical structure has been viewed as a useful restoration technique to increase the density of territorial species, particularly in stream fishes. However, a decrease in territory size may have a negative effect on the fitness of individual organisms. We attempted to quantify some of the positive and negative effects of increasing habitat structure on the behaviour and growth rate of wild young‐of‐the‐year (YOY) Atlantic salmon. Fish were exposed to one of two habitat treatments in mesh enclosures in Catamaran Brook, New Brunswick: a gravel substrate (low complexity) or a gravel substrate with boulders added (high complexity). Wild‐caught individuals were tagged, weighed and measured before being stocked at densities of 1·m−2 for 7‐d trials. While fish from high‐complexity treatments benefited from lower rates of aggression, they also had lower foraging rates and smaller territories compared to those in low‐complexity treatments. Specific growth rate, however, did not differ significantly between treatments. While the addition of structure to a habitat may be beneficial at the population level in terms of an increase in population density, our results suggested that individual fish may pay some short‐term costs in these environments. Further research is needed to evaluate the longer term costs and benefits of adding structure to improve the habitat quality for stream salmonids.

Environment modulates population social structure: experimental evidence from replicated social networks of wild lizards

Social structure is a fundamental component of a population that drives ecological and evolutionary processes ranging from parasite transmission to sexual selection. Nevertheless, we have much to learn about factors that explain variation in social structure. We used advances in biologging and social network analysis to experimentally test how the local habitat, and specifically habitat complexity, modulates social structure at different levels in wild populations. Sleepy lizards, Tiliqua rugosa , establish nonrandom social networks that are characterized by avoidance of some neighbours and frequent interactions with one opposite-sex individual. Using synchronous GPS locations of all adult lizards, we constructed social networks based on spatial proximity of individuals. We increased habitat structural complexity in two study populations by adding 100 short fences across the landscape. We then compared the resulting movement behaviour and social structure between these populations and two unmanipulated populations. Social connectivity (network density) and social stability, measured at weekly intervals, were greater in populations with increased habitat structural complexity. The level of agonistic interaction (quantified as scale damage) was also higher, indicating a fitness cost of greater social connectivity. However, some network parameters were unaffected by increased complexity, including disassortative mixing by sex, and at the individual level, social differentiation among associates (coefficient of variation of edge weights) and maximal interaction frequencies (maximal edge weight). This suggests divergent effects of changed ecological conditions on individual association behaviour compared to the resulting social structure of the population. Our results contrast with those from studies of more gregarious species, in which higher structural complexity in the environment relaxed the social connectivity. This shows that the response to altered ecological conditions can differ fundamentally between species or between populations, and we suggest that it depends on their tendency for gregarious behaviour. • We investigated how environmental conditions modulate social structure. • We conducted a replicated experiment in wild lizard populations. • Network density was greater in populations with increased habitat complexity. • Social differentiation at the individual level was unaffected. • Our results suggest divergent effects on the individual and population level.

Impacts of non-oil tree plantations on biodiversity in Southeast Asia

Tree plantations are rapidly expanding throughout Southeast Asia, and likely pose threats to the conservation of native biodiversity. While the impacts of oil palm expansion on tropical biodiversity has received increasing attention, and several recent reviews, the effects of other tree crops on native flora and fauna biodiversity remain understudied. Here we assess and compare the impact of rubber, acacia, eucalyptus, teak, and cacao plantations on biodiversity throughout the region, and discuss spatial and temporal factors that influence a production landscape’s ability to support native species. Using a meta-analysis, we show that rubber and cacao plantations support lower biodiversity than intact forests, and are approximately equivalent to oil palm in their impacts on native biota. In contrast, richness of native species in acacia plantations was not statistically different from that in intact or secondary forests, though species composition could still be radically altered. Furthermore, older plantations are more similar to primary forests regarding community composition than younger plantations, likely due to increased habitat complexity and heterogeneity with plantation age. Though non-oil palm tree plantations are not ecologically equivalent to primary forests with regards to maintaining native community composition, they can support greater biodiversity than other modified landscapes such as annual crops. Increasing habitat complexity and spatial heterogeneity within plantations can improve the quality of the habitat they provide to native species. With industrial plantations projected to continue to expand, identifying ways to mitigate their impacts on biodiversity are increasingly critical.

Differential benthic community response to increased habitat complexity mediated by an invasive barnacle

Invasive species threaten native ecosystems worldwide. However, these species can interact positively with local communities, increasing their richness, or the abundance of some species. Many invasive species are capable of influencing the habitat itself, by ameliorating physical stress and facilitating the colonization and survival of other organisms. Barnacles are common engineer species that can change the physical structure of the environment, its complexity, and heterogeneity through their own structure. Balanus glandula is a native barnacle of the rocky shores of the west coast of North America. In Argentina, this invasive species not only colonizes rocky shores but it also has successfully colonized soft-bottom salt marshes, where hard substrata are a limiting resource. In these environments, barnacles form three-dimensional structures that increase the structural complexity of the invaded salt marshes. In this work, we compared the composition, density, richness, and diversity of the macroinvertebrate assemblages associated with habitats of different structural complexity in two Patagonian salt marshes where B. glandula is well established. Our results showed differences in the relative distribution and abundances of the invertebrate species between habitats of different complexities. Furthermore, the response of the communities to the changes in the structural complexity generated by B. glandula was different in the two marshes studied. This highlights the fact that B. glandula facilitates other invertebrates and affect community structure, mainly where the settlement substrata (Spartina vs. mussels) are not functionally similar to the barnacle. Thus, our work shows that the rocky shore B. glandula is currently a critical structuring component of the native invertebrate community of soft-bottom environments where this species was introduced along the coast of southern South America.

Resetting the river template: the potential for climate‐related extreme floods to transform river geomorphology and ecology

Summary Climate change is expected to alter the occurrence of extreme climatic events, including major floods. Future shifts in the frequency and intensity of extreme floods will vary by region and could modify the geomorphological character of riverine habitat. The geomorphological structure of rivers determines the quality and quantity of habitat available for resident biota, and thus, changes to morphology from more extreme floods are likely to affect river ecology over and above the direct effects of the flood events themselves. Extreme floods can exacerbate the effect of multiple anthropogenic stressors, with potentially dramatic effects on freshwater ecosystems. For instance, high flows mobilise nutrients, sediment and toxic chemicals, and aid dispersal of invasive species, whereas land‐use change and channelisation impair flood refugia and constrain recolonisation pathways. Extreme floods may also benefit riverine and riparian biota, overwhelming current anthropogenic constraints and infrastructure to increase habitat complexity and floodplain area. Management to protect human life and infrastructure from severe river flooding can alter channel geomorphology, habitat quality and ecology. However, flood prevention engineering that incorporates the natural form of rivers could potentially mitigate anthropogenic flood damage, in turn restoring habitat and historical ecosystem functioning. We examine potential changes in river channel and floodplain geomorphological characteristics resulting from altered extreme flooding regimes and consider likely implications for the management of the world's freshwater biota.

Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. middle Atlantic slope

Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612m) resulted in 295h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430m, 1455–1610m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400m. Fishes defining the deeper zone included Lycodes sp., Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, and Aldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme brosme, and Helicolenus dactylopterus, exhibited a variety of habitat use patterns. In general, fish assemblages in the soft substrata areas (dominated by P. chesteri, N. bairdii, Glyptocephalus cynoglossus, Lophius americanus, Merluccius albidus) were different from those in more complex habitats (dominated by Laemonema spp., Hoplostethus spp., B. brosme, Benthocometes robustus, L. americanus, Dysommina rugosa). Although, when present, the dense coral and sponge cover did not statistically affect general fish assemblage patterns in hard bottom habitats, these sessile organisms markedly increased habitat complexity, and some fish species exhibited close association with them. Fish species compositions in the two canyons were not substantially different from the surrounding slopes. However, the diversity of habitats within both the canyons and seeps exerted an important influence on assemblage structure. At least for some species (e.g., B. brosme) canyon and seep environments may be a refuge from intensive bottom fishing activities. We frequently observed evidence of commercial and recreational fishing activity (lost gear on bottom and fishing boats in the area) throughout the canyons and some resulting habitat damage. Conservation measures for the unique and more vulnerable areas (seep and coral habitats) have recently been approved.

Fish Assemblage Structure and Habitat Associations in a Large Western River System

Longitudinal gradients of fish assemblage and habitat structure were investigated in the Kootenai River of northern Idaho. A total of 43 500-m river reaches was sampled repeatedly with several techniques (boat-mounted electrofishing, hoop nets and benthic trawls) in the summers of 2012 and 2013. Differences in habitat and fish assemblage structure were apparent along the longitudinal gradient of the Kootenai River. Habitat characteristics (e.g. depth, substrate composition and water velocity) were related to fish assemblage structure in three different geomorphic river sections. Upper river sections were characterized by native salmonids (e.g. mountain whitefish Prosopium williamsoni), whereas native cyprinids (peamouth Mylocheilus caurinus, northern pikeminnow Ptychocheilus oregonensis) and non-native fishes (pumpkinseed Lepomis gibbosus, yellow perch Perca flavescens) were common in the downstream section. Overall, a general pattern of species addition from upstream to downstream sections was discovered and is likely related to increased habitat complexity and additions of non-native species in downstream sections. Assemblage structure of the upper sections were similar, but were both dissimilar to the lower section of the Kootenai River. Species-specific hurdle regressions indicated the relationships among habitat characteristics and the predicted probability of occurrence and relative abundance varied by species. Understanding fish assemblage structure in relation to habitat could improve conservation efforts of rare fishes and improve management of coldwater river systems. Copyright © 2015 John Wiley & Sons, Ltd.

Anthropogenic stressors influence small mammal communities in tropical East African savanna at multiple spatial scales

Context Protection of natural ecosystems undoubtedly safeguards ecological communities, with positive benefits for ecosystem processes and function. However, ecosystems are under threat from anthropogenic stressors that reduce the resilience both of component species and the system as a whole. Aims To determine how anthropogenic stressors (land use and climate change) could impact the diversity and resilience of a small mammal community in the greater Serengeti ecosystem, an East African savanna comprising Serengeti National Park (SNP) and adjacent agro-ecosystems, at local (SNP) and Africa-wide geographic scales. Methods We recorded small mammal species in 10 habitats in the greater Serengeti ecosystem, including the agro-ecosystem, over 48 years (1962–2010). We calculated richness and diversity for each habitat type, and used an index of similarity to quantify differences in the community among habitats. Species accumulation curves were also generated for each habitat type. Key results We recorded 40 species of small mammals in the greater Serengeti ecosystem. At the local scale, restricted habitat types in SNP (each <1% of the total area) made a disproportionately large contribution to diversity. Agro-ecosystems had lower richness and were less likely to contain specialist species. At regional and Africa-wide scales, local endemics were less likely to be recorded in the agro-ecosystem (57% species loss) compared with those with regional (33% loss) or Africa-wide (31%) geographic distributions. Conclusions At the local scale, the variety of habitats in SNP contributed to overall diversity. However, the ability to maintain this diversity in the adjacent agro-ecosystem was compromised for localised endemics compared with species with Africa-wide ranges. Land use intensification adjacent to SNP and projected changes in rainfall patterns for East Africa under global climate scenarios may compromise the future resilience of the small mammal community in this tropical savanna ecosystem. Implications The loss of rare or specialised species from protected areas and human-modified ecosystems could be mitigated by: (1) increasing habitat complexity and maintaining specialist habitats in the agro-ecosystem; and (2) creating buffers at the boundary of protected natural ecosystems that accommodate regime shifts in response to climatic change. These measures would increase the resilience of this coupled human–natural savanna ecosystem.

The importance of deep-sea vulnerable marine ecosystems for demersal fish in the Azores

Cold-water corals and sponges aggregations are important features of the deep sea, recently classified as vulnerable marine ecosystems (VMEs). VMEs increase habitat complexity, believed to act as feeding, reproductive, nursery and refuge areas for a high number of invertebrates and fish species. In the Azores archipelago (NE Atlantic), VMEs are prevalent but their ecological role has not received much attention. The objective of this study was to investigate the importance of VMEs in influencing the distribution of demersal fish in the Azores. With data collected during experimental longline surveys , we modeled the catch of six demersal fish species of commercial value (Helicolenus dactylopterus, Pagellus bogaraveo, Mora moro, Conger conger, Phycis phycis, Pontinus kuhlii) in relation to the presence of VMEs and other environmental factors using General Additive Models (GAMs). Our study demonstrated that total fish catch was higher inside VMEs but the relationship between fish and VMEs varied among fish species. Species specific models showed that catch was strongly influenced by environmental factors, mainly depth, whilst the presence of VMEs was only important for two rockfish species; juvenile and adult P. kuhlii and juvenile H. dactylopterus. Although the association between deep-sea demersal fish and VMEs may be an exception to the rule, we suggest that VMEs act as an important habitat for two commercially important species in the Azores.