In recent decades, low salinity water flooding (LSWF) has gained much attention from both the industry and academia due to its effectiveness in oil recovery. Many efforts are still going on to harness the effect of LSWF combined with chemical enhanced oil recovery (CEOR). However, studies identifying Ionic Liquids (ILs) as potential candidates for CEOR with LSWF are not available in the literature. This study aims to evaluate the synergistic effect of ILs with varying chain lengths ([C8mim] [BF4], [C10mim] [BF4], [C12mim][BF4]) with the low saline ion tuned seawater (ITSW) for enhanced oil recovery (EOR) from carbonate reservoirs. A comprehensive analysis viz. stability and compatibility of ILs, IFT, zeta potential, contact angle, and adsorption analysis were performed to establish the mechanisms. Finally, oil recovery potential was quantified by core flooding. ILs showed a better synergistic effect with ITSW than SW. The IFT value was found to be decreasing with increasing chain length and reduction in salinity. ILs with ITSW demonstrated a strong ability to alter the wettability of rock surfaces to less oil-wet conditions. Zeta potential values turned towards the positive side with adding ILs at the oil/brine and rock/brine interfaces. In addition, ILs have shown significantly less adsorption density in ITSW than SW at the simulated reservoir temperature of 90 °C. IL having the longest chain length ([C12mim] [BF4]) showed superior properties compared to other ILs and reported an incremental recovery of 12% of original oil in place (OOIP) with low saline ITSW. The primary mechanisms involved for better performance of [C12mim] [BF4] with ITSW are calcite dissolution, the interplay of potential determining ions, and enhanced ion pair formation.