We consider a quasi-one-dimensional two-component systm, described by a pair of Nonlinear Schr\"{o}dinger/Gross-Pitaevskii Equations (NLSEs/GPEs), which are coupled by the linear mixing, with local strength $\Omega $, and by the nonlinear incoherent interaction. We assume the self-repulsive nonlinearity in both components, and include effects of a harmonic trapping potential. The model may be realized in terms of periodically modulated slab waveguides in nonlinear optics, and in Bose-Einstein condensates too. Depending on the strengths of the linear and nonlinear couplings between the components, the ground states (GSs) in such binary systems may be symmetric or asymmetric. In this work, we introduce a periodic spatial modulation of the linear coupling, making $\Omega $ an odd, or even function of the coordinate. The sign flips of $\Omega (x)$ strongly modify the structure of the GS in the binary system, as the relative sign of its components tends to lock to the local sign of $\Omega $. Using a systematic numerical analysis, and an analytical approximation, we demonstrate that the GS of the trapped system contains one or several kinks (dark solitons) in one component, while the other component does not change its sign. Final results are presented in the form of maps showing the number of kinks in the GS as a function of the system's parameters, with the odd/even modulation function giving rise to the odd/even number of the kinks. The modulation of $\Omega (x)$ also produces a strong effect on the transition between states with nearly equal and strongly unequal amplitudes of the two components.
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