Single-crystal X-ray diffraction and DFT calculation have been carried out for an atomic-level understanding of β-cyclodextrin (β-CD) inclusion complexation with 2 tricyclic antidepressants (TCAs), desipramine and imipramine. X-ray analysis discloses that the A–C-rings are buried in the β-CD cavity and the side chain is mostly outside the cavity, nearby the O2–H/O3–H side. Hence, the inclusion structures of both complexes are stabilized by host–guest C5–H∙∙∙π interaction and N5′–H∙∙∙O5/O6 H-bonds of twofold-screw-symmetry-related molecules, which are similar to those of the reported complexes of nortriptyline and amitriptyline. The DFT full-geometry optimization in the gas phase reveals an alternative inclusion scenario with the TCA side chain that is embedded in the β-CD cavity and stabilized by intermolecular O6–H∙∙∙N5’ H-bond and O2–H/O3–H∙∙∙π interactions. The β-CD encapsulation of the TCA side chain is more energetically stable by 10.76 and 4.70 kcal mol−1 than that of the aromatic moiety for the respective complexes of DPM and IPM, based on the relative stabilization energies (ΔΔEstb). This suggests the existence of the bimodal β-CD–TCA inclusion complexes as spectroscopically observed in solution, thus explaining the controversy in the inclusion mode and the improvement of TCA therapeutic effect by CD encapsulation.
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