Fusarium Head Blight Incidence Research Articles

Construction of a comprehensive meteorological risk index for wheat Fusarium head blight prediction based on more than a half-century of monitoring data.

Fusarium head blight (FHB) represents a critical threat to wheat production globally, not only reducing yields but also contaminating crops with harmful mycotoxins. This study aimed to elucidate new spatiotemporal patterns of FHB incidence and to develop a comprehensive meteorological risk index to enhance scientific prevention and control of the disease. Through the analysis of annual and decadal variations from 1965 to 2023, the study assessed FHB trends across four agricultural regions (I, II, III, and IV) in Jiangsu Province, located in the middle and lower reaches of the Yangtze River-a hotspot for FHB in China. Key findings include: Since 1965, Regions I and III consistently exhibited higher FHB incidence rates compared to Regions II and IV. Post-2000, there was a notable increase in years with high incidence rates, with Region III overtaking Region I as the region with the highest incidence. Since 2010, occurrences of FHB reaching the most severe grade (Grade 5) have surpassed those in previous decades across all regions. The study also revealed a stronger correlation between meteorological factors (cumulative precipitation, number of days with rainfall ≥ 0.1 mm, total rainy days with ≥ 2 and ≥3 consecutive days of rain, total rainy days with both average daily air temperature ≥ 15 °C and daily rainfall ≥ 0.1 mm, days with average daily relative humidity ≥ 85%, cumulative sunshine hours, and cumulative cloudy days) and the FHB incidence rates during the heading-flowering-grain filling period in Regions I, II, and III, compared to the heading-flowering period alone. This indicates that optimal temperature and high humidity during the grain filling stage significantly contribute to the final FHB incidence rates. Despite the less apparent correlation between temperature changes and disease rates, the significant warming trend observed since 2000 has likely fostered conditions conducive to the proliferation of FHB. The comprehensive meteorological risk index, constructed to incorporate key meteorological factors during the heading-flowering-filling period, showed a strong correlation with actual disease incidences. The index demonstrated fitting accuracy rates of 84.7% for Region I, 72.9% for Region II, 83.1% for Region III, and 90.9% for Region IV, underscoring its effectiveness in predicting FHB occurrences. This tool offers both convenience and practicality, providing valuable insights for strategically managing FHB risks based on local weather conditions.

Influence of Wheat Cultivars, Infection Level, and Climate after Anthesis on Efficacy of Fungicide for Control of Fusarium Head Blight in the Huang-Huai-Hai Plain of China

Fusarium head blight (FHB), caused by the Fusarium graminearum species complex, causes significant losses in grain yield and quality of wheat (Triticum aestivum) by inducing floret sterility. Grains become contaminated with mycotoxins, especially deoxynivalenol (DON), making them unsuitable for consumption. To clarify the impact of wheat cultivar resistance, infection level, and climate after anthesis on the efficacy of a fungicide for the control of FHB, we treated two moderately susceptible cultivars and 11 susceptible cultivars with fungicide (48% phenamacril + tebuconazole) at anthesis over two years. FHB incidence (INC), disease severity index (DSI), Fusarium-damaged kernels, DON contamination, thousand-kernel weight, and yield were evaluated under artificially inoculated and naturally infected field trials in 2018 and 2021. The results of multi-factor variance analysis show that the control efficacy with respect to INC and DSI is affected by cultivar, fungicide, infection level, and climatic conditions including the average daily temperature, average daily relative humidity, and total rainfall from anthesis to 21 days after anthesis (p < 0.01). Notably, cultivar resistance (deviance = 13.34, 9.55, and 11.22) is more important than fungicide (deviance = 5.77, 6.66, and 6.69) to control the efficacy of INC, DSI, and DON. The results also suggest that infection level appears to be more important than cultivars and fungicide to control the efficacy of INC, and more important than fungicide to control the efficacy of DSI. Total rainfall is more important than other climatic factors. Our results reveal that fungicide is more effective in moderately susceptible cultivars (‘Zhengmai 9023’ and ‘Xinong 979’, 89.5%~98.9%) and some susceptible cultivars than in other susceptible cultivars (‘Zhengmai 7698’ and ‘Zhoumai 27’, 51.9%~67.2%). Thus, integrating cultivar resistance with fungicide application can be an effective strategy for the management of FHB and DON in winter wheat in the Huang-huai-hai Plain of China.

Testing the efficacy of a newly released fungicide, Sphaerex, for control of Fusarium Head Blight in wheat

Fusarium head blight (FHB) is a destructive disease of wheat and other small-grain cereals. FHB causes reduction in crop yield due to pre-mature bleaching of spikes. Additionally, it deteriorates the crop quality due to the production of mycotoxins. An integrated management strategy is needed to effectively manage this disease. One of the most important strategies in the FHB management toolbox is chemical control. Fungicides start losing their efficacy over time due to the development of fungicide resistance in the pathogens. This necessitates the development and testing of new fungicides with multiple active ingredients or modes of action. In this 3-year study, we evaluated the effectiveness of a new fungicide with multiple active ingredients, Sphaerex (a proprietary mix of metconazole and prothioconazole) in an FHB-susceptible soft red winter wheat cultivar, Shirley in the eastern United States. Sphaerex provided significantly better control over untreated plots for FHB Incidence, FHB Severity, and DON content across all three years. The level of control of FHB and DON by Sphaerex was found to be similar to that provided by other standard FHB fungicides. The yield of the fungicide-treated plots was statistically similar to that of the untreated plots.

Bacillus velezensis RC218 and emerging biocontrol agents against Fusarium graminearum and Fusarium poae in barley: in vitro, greenhouse and field conditions

Fusarium head blight (FHB) is one of the most common diseases in Argentina, affecting the quality and yield of barley grains. Fusarium graminearum sensu stricto (ss) and Fusarium poae are causal agents of FHB and potential sources of mycotoxin contamination in barley. Conventional management strategies do not lead to a complete control of FHB; therefore, biological control emerges as an eco-friendly alternative in the integrated management of the disease. In the present work, Bacillus velezensis, Bacillus inaquosorum, Bacillus nakamurai and Lactobacillus plantarum were evaluated as potential biocontrol agents against F. graminearum ss and F. poae on barley-based media. Bacillus velezensis RC218 was selected to carry out greenhouse and field trials in order to reduce FHB and mycotoxin accumulation. This strain was able to control growth of both Fusarium species and reduced deoxynivalenol (DON) and nivalenol (NIV) production by 66 % and 79 %, respectively. Bacillus inaquosorum and B. nakamurai were more effective in controlling F. poae growth, and the mean levels of reduction in DON accumulation were 50 and 38 %, and 93 and 26 % for NIV, respectively. Lactobacillus plantarum showed variable biocontrol capacity depending on the strain, with no significant mycotoxin reduction. The biocontrol on incidence and severity of FHB in the greenhouse and field trials was effective, being more efficient against F. graminearum ss and DON accumulation than against F. poae and NIV occurrence. This study provides valuable data for the development of an efficient tool based on biocontrol agents to prevent FHB-producing Fusarium species development and mycotoxin occurrence in barley, contributing to food safety.

Root Silicon Amendment Enhances Barley’s Resistance to Fusarium Head Blight in the Field

Background: Silicon (Si) amendment plays an important role in enhancing the resistance of several plant species to diverse pathogens. To date, a few studies have focused on how Si application helps barley, a higher Si absorber and accumulator monocot, to resist fungal diseases, including Fusarium head blight (FHB), which reduces the quality and safety of harvested products worldwide. However, no study has ever been conducted to demonstrate Si's ability to suppress FHB development in barley heads under uncontrolled climatic conditions. Materials and Methods: This 2-year field study elucidated the effect of multiple Si applications at 1.7 mM via roots in two barley cultivars, Arabi Aswad (AS moderately resistant) and Arabi Abiad (AB moderately susceptible), to control four Fusarium species with diverse pathogenicity. The incidence of FHB (DI type I resistance), severity of FHB (DS type II), and Fusarium-damaged kernels (FDK type III) were also tested to describe the nature of the Si-enhanced barley resistance. Results: Si treatment at 1.7 mM under soil culture decreased FHB development by enhancing all resistance types measured in the present research. DI, DS, and FDK were reduced by 18.7%, 20.3%, and 20.2%, respectively, in Si-Fusarium-inoculated treatments relative to fungal-inoculated controls. Si absorption in barley strengthened the defense system measured by type I and type II on AB to a level comparable to AS not amended with Si. Irrespective of the barley cultivar, however, Si resulted in a quasi-similar reduction of FDK. Importantly, Si treatment at 1.7 mM decreased the damage of FHB in previous analyses conducted on AS and AB under in vitro and growth chamber environments, showing that Si enhanced the expression of resistance to FHB infection in seedlings and adult barley plants. Conclusion: All of these results are promising outcomes for the application of Si as a safe and effective method against Fusarium species. This study provides new insights into the potential of multiple Si applications at 1.7 mM via roots for boosting barley’s resistance to FHB with a bright prospect for Si use in barley cultivation under field conditions.

Multi-locus genome-wide association studies reveal the genetic architecture of Fusarium head blight resistance in durum wheat.

Durum wheat is more susceptible to Fusarium head blight (FHB) than other types or classes of wheat. The disease is one of the most devastating in wheat; it reduces yield and end-use quality and contaminates the grain with fungal mycotoxins such as deoxynivalenol (DON). A panel of 265 Canadian and European durum wheat cultivars, as well as breeding and experimental lines, were tested in artificially inoculated field environments (2019-2022, inclusive) and two greenhouse trials (2019 and 2020). The trials were assessed for FHB severity and incidence, visual rating index, Fusarium-damaged kernels, DON accumulation, anthesis or heading date, maturity date, and plant height. In addition, yellow pigment and protein content were analyzed for the 2020 field season. To capture loci underlying FHB resistance and related traits, GWAS was performed using single-locus and several multi-locus models, employing 13,504 SNPs. Thirty-one QTL significantly associated with one or more FHB-related traits were identified, of which nine were consistent across environments and associated with multiple FHB-related traits. Although many of the QTL were identified in regions previously reported to affect FHB, the QTL QFhb-3B.2, associated with FHB severity, incidence, and DON accumulation, appears to be novel. We developed KASP markers for six FHB-associated QTL that were consistently detected across multiple environments and validated them on the Global Durum Panel (GDP). Analysis of allelic diversity and the frequencies of these revealed that the lines in the GDP harbor between zero and six resistance alleles. This study provides a comprehensive assessment of the genetic basis of FHB resistance and DON accumulation in durum wheat. Accessions with multiple favorable alleles were identified and will be useful genetic resources to improve FHB resistance in durum breeding programs through marker-assisted recurrent selection and gene stacking.

Hyperspectral Imaging and Selected Biological Control Agents for the Management of Fusarium Head Blight in Spring Wheat.

Fusarium spp. are important pathogens on cereals, capable of causing considerable yield losses and significantly reducing the quality of harvested grains due to contamination with mycotoxins. The European Union intends to reduce the use of chemical-synthetic plant protection products (csPPP) by up to 50% by the year 2030. To realize this endeavor without significant economic losses for farmers, it is crucial to have both precise early detection of pathogens and effective alternatives for csPPP. To investigate both the early detection of Fusarium head blight (FHB) and the efficacy of selected biological control agents (BCAs), a pot experiment with spring wheat (cv. 'Servus') was conducted under semi-field conditions. Spikes were sprayed with different BCAs prior to inoculation with a mixture of F. graminearum and F. culmorum conidia. While early detection of FHB was investigated by hyperspectral imaging (HSI), the efficiency of the fungal (Trichoderma sp. T10, T. harzianum T16, T. asperellum T23 and Clonostachys rosea CRP1104) and bacterial (Bacillus subtilis HG77 and Pseudomonas fluorescens G308) BCAs was assessed by visual monitoring. Evaluation of the hyperspectral images using linear discriminant analysis (LDA) resulted in a pathogen detection nine days post inoculation (dpi) with the pathogen, and thus four days before the first symptoms could be visually detected. Furthermore, support vector machines (SVM) and a combination of LDA and distance classifier (DC) were also able to detect FHB symptoms earlier than manual rating. Scoring the spikes at 13 and 17 dpi with the pathogen showed no significant differences in the FHB incidence among the treatments. Nevertheless, there is a trend suggesting that all BCAs exhibit a diminishing effect against FHB, with fungal isolates demonstrating greater efficacy compared to bacterial ones.

Multi-locus genome-wide association study of fusarium head blight in relation to days to anthesis and plant height in a spring wheat association panel.

Fusarium head blight (FHB) is a highly destructive fungal disease of wheat to which host resistance is quantitatively inherited and largely influenced by the environment. Resistance to FHB has been associated with taller height and later maturity; however, a further understanding of these relationships is needed. An association mapping panel (AMP) of 192 predominantly Canadian spring wheat was genotyped with the wheat 90K single-nucleotide polymorphism (SNP) array. The AMP was assessed for FHB incidence (INC), severity (SEV) and index (IND), days to anthesis (DTA), and plant height (PLHT) between 2015 and 2017 at three Canadian FHB-inoculated nurseries. Seven multi-environment trial (MET) datasets were deployed in a genome-wide association study (GWAS) using a single-locus mixed linear model (MLM) and a multi-locus random SNP-effect mixed linear model (mrMLM). MLM detected four quantitative trait nucleotides (QTNs) for INC on chromosomes 2D and 3D and for SEV and IND on chromosome 3B. Further, mrMLM identified 291 QTNs: 50 (INC), 72 (SEV), 90 (IND), 41 (DTA), and 38 (PLHT). At two or more environments, 17 QTNs for FHB, DTA, and PLHT were detected. Of these 17, 12 QTNs were pleiotropic for FHB traits, DTA, and PLHT on chromosomes 1A, 1D, 2D, 3B, 5A, 6B, 7A, and 7B; two QTNs for DTA were detected on chromosomes 1B and 7A; and three PLHT QTNs were located on chromosomes 4B and 6B. The 1B DTA QTN and the three pleiotropic QTNs on chromosomes 1A, 3B, and 6B are potentially identical to corresponding quantitative trait loci (QTLs) in durum wheat. Further, the 3B pleiotropic QTN for FHB INC, SEV, and IND co-locates with TraesCS3B02G024900 within the Fhb1 region on chromosome 3B and is ~3 Mb from a cloned Fhb1 candidate gene TaHRC. While the PLHT QTN on chromosome 6B is putatively novel, the 1B DTA QTN co-locates with a disease resistance protein located ~10 Mb from a Flowering Locus T1-like gene TaFT3-B1, and the 7A DTA QTN is ~5 Mb away from a maturity QTL QMat.dms-7A.3 of another study. GWAS and QTN candidate genes enabled the characterization of FHB resistance in relation to DTA and PLHT. This approach should eventually generate additional and reliable trait-specific markers for breeding selection, in addition to providing useful information for FHB trait discovery.

High-density genetic mapping of Fusarium head blight resistance and agronomic traits in spring wheat.

Fusarium head blight (FHB) has rapidly become a major challenge to successful wheat production and competitive end-use quality in western Canada. Continuous effort is required to develop germplasm with improved FHB resistance and understand how to incorporate the material into crossing schemes for marker-assisted selection and genomic selection. The aim of this study was to map quantitative trait loci (QTL) responsible for the expression of FHB resistance in two adapted cultivars and to evaluate their co-localization with plant height, days to maturity, days to heading, and awnedness. A large doubled haploid population of 775 lines developed from cultivars Carberry and AC Cadillac was assessed for FHB incidence and severity in nurseries near Portage la Prairie, Brandon, and Morden in different years, and for plant height, awnedness, days to heading, and days to maturity near Swift Current. An initial linkage map using a subset of 261 lines was constructed using 634 polymorphic DArT and SSR markers. QTL analysis revealed five resistance QTL on chromosomes 2A, 3B (two loci), 4B, and 5A. A second genetic map with increased marker density was constructed using the Infinium iSelect 90k SNP wheat array in addition to the previous DArT and SSR markers, which revealed two additional QTL on 6A and 6D. The complete population was genotyped, and a total of 6,806 Infinium iSelect 90k SNP polymorphic markers were used to identify 17 putative resistance QTL on 14 different chromosomes. As with the smaller population size and fewer markers, large-effect QTL were detected on 3B, 4B, and 5A that were consistently expressed across environments. FHB resistance QTL were co-localized with plant height QTL on chromosomes 4B, 6D, and 7D; days to heading on 2B, 3A, 4A, 4B, and 5A; and maturity on 3A, 4B, and 7D. A major QTL for awnedness was identified as being associated with FHB resistance on chromosome 5A. Nine small-effect QTL were not associated with any of the agronomic traits, whereas 13 QTL that were associated with agronomic traits did not co-localize with any of the FHB traits. There is an opportunity to select for improved FHB resistance within adapted cultivars by using markers associated with complementary QTL.

Evaluation of fusariosis resistance in commercial onion varieties in Burkina Faso

Fusarium head blight is a serious fungal disease that affects various crops, including onions, in many parts of the world, including Burkina Faso. Onion varieties that have been identified as efficient in other areas may not necessarily perform well in Burkina Faso, given the particular environmental and agronomic conditions of the region. Therefore, the aim of this study was to identify onion varieties that demonstrate resistance or tolerance to Fusarium head blight, as well as yield high harvests, in the specific soil and climate conditions of Burkina Faso. To achieve this, seven onion varieties were evaluated during the dry season in Tabtenga, located in the commune of Loumbila. The incidence rates and the severity of Fusarium head blight were assessed at 35 and 75 days after transplanting. The results indicated that the varieties Noflaye, Prema 178, Rouge de Tana, and Super Yali displayed the lowest incidence of Fusarium head blight. However, the severity of the disease was not statistically different across all the varieties tested. Bulb yields ranged from 11.50 to 20.75 tons per hectare. This study is the first to provide data on the resistance of onion varieties to Fusarium head blight in the central agro-ecological zone of Burkina Faso. These findings suggest that the identified varieties may hold promise for sustainable onion production in the region. However, to confirm the results, multi-local trials should be conducted across both dry and rainy seasons.

A status update on fusarium head blight on Western Canadian wheat

Fusarium head blight (FHB) is a devastating disease of wheat in Canada and disease surveillance is a critical component of integrated disease management, disease forecasting, prioritizing research and breeding efforts, grain handling, and cleaning post harvest. We report on the recent trends of FHB in Canadian wheat including incidence and severity from 1995 to 2021 based on data from 208,247 samples. Our results show a steady increase in FHB incidence from 1995, with an epidemic year in 2016, followed by several years of low incidence. Results also indicated that FHB severity has been stable over time, but not always correlated with incidence. Data from the analysis of 26,538 samples from 2018 to 2021 demonstrate a strong positive correlation between the number of Fusarium damaged kernels (severity) and concentrations of the mycotoxin deoxynivalenol. Together, our results provide the most robust survey of FHB in Canada to date, which complement national and international disease monitoring and management efforts.

Spécies Diversity and Physiological Characterization of Fusarium spp. Isolates Causing Potato (Solanum tuberosum L.) Fusariosis (Far-North, Cameroon)

Introduction: Potato production in the Far North Region, Cameroon is hampered by a wide range of fungi of the genus Fusarium.
 Aims: The aim of this work was to isolate and conduct physiological characterization of Fusarium spp. isolates responsible for potato Fusarium disease in the Far North Region, Cameroon.
 Methodology: Isolates were obtained from diseased organs (leaves) from fifteen villages in the district of Mogodé, Mokolo and Koza, Far North Cameroon. The species responsible for fusariosis were identified using several identification Keys on a base of symptoms and morphological spores characteristics (macroconidia, microconidia and chlamydospores). Fusarium incidence and rainfall were assessed. Radial growth, sporulation and pathogenicity of the isolates were use to evaluated the parameters of physiological characterization.
 Results: The overall average incidence of Fusarium head blight in the Far North Region, Cameroon is 29.36%. Furthermore, out of the 20 isolates obtained, six Fusarium species (Fusarium oxysporium, F. solani, F. equiseti, F. avenacearum, F. colmorum and F. sambicum) were identified. The highest growth rate (8.1 cm), the highest spore production (8 × 105) and the highest severity index (3%) were respectively obtained with the isolates FUROM 2 and FUTEK 3, FUMOG 1, FUMOG 2, FUROM 1 and FURAF from Mogodé District on PCA medium.
 Conclusion: Potato production in the Far North Region, Cameroon is confronted by various Fusarium species which have physiological characteristics that vary according to the area of origin of the isolates and the growing media.

Pathogenicity of Asymptomatically Residing Fusarium Species in Non-Gramineous Plants and Weeds to Spring Wheat under Greenhouse Conditions.

Despite significant efforts in recent decades to combat Fusarium head blight (FHB), this disease remains one of the most important and widely studied diseases of wheat and other cereal plants. To date, studies have focused on small grain cereals as hostplants for these pathogens, but it was recently discovered that asymptomatic non-gramineous plants and weeds can serve as alternative sources of fungi associated with FHB. The aim of this study was to evaluate the pathogenicity of Fusarium avenaceum, F. culmorum, F. graminearum and F. sporotrichioides isolated from non-gramineous plants and weed species to spring wheat under greenhouse conditions. A total of 91 Fusarium isolates, including 45 from weeds and 46 from non-gramineous plants were floret inoculated at mid anthesis. The FHB incidence and severity (%) of inoculated heads and the area under the disease progress curve (AUDPC) were calculated. To determine yield losses, the weight of 1000 grains (TGW) was evaluated. Results of the research showed that FHB severity (%) values in Fusarium spp.-inoculated heads from non-gramineous plants varied from 9.3% to 69.6% and AUDPC values ranged from 161.5% to 1044.6%. TGW was most significantly reduced by the F. culmorum isolates BN26r and BN39fl from Brassica napus and isolates BV15.1l and BV142.1pe from Beta vulgaris (37%, 30%, 28.8% and 31.8% respectively, compared to the water control). In Fusarium-inoculated heads from weeds, FHB severity values ranged from 6.2% to 81.0% and AUDPC values varied from 134.2% to 1206.6%. TGW was most significantly decreased by CBP1401r isolate from Capsella bursa-pastoris (52%). The study results suggest that the pathogenicity of Fusarium species isolated from different hosts to wheat more strongly depends on the Fusarium species and strain than the hostplant. Under greenhouse conditions, F. culmorum strain groups obtained from weeds, non-gramineous plants and Triticum were more pathogenic to wheat than the water control and other Fusarium species.

Regional prediction of Fusarium head blight occurrence in wheat with remote sensing based Susceptible-Exposed-Infectious-Removed model

• Fusarium head blight (FHB) is a major fungal disease affecting wheat production. • Regional disease prediction using mechanistic models is difficult. • A remote sensing based model for regional prediction of FHB in wheat is proposed. • Optimized soil adjusted vegetation index (OSAVI) was used for model initialization. • Susceptible-Exposed-Infectious-Removed (SEIR) model was calibrated and verified. Fusarium head blight (FHB) is one of the major fungal diseases affecting wheat production worldwide, influencing kernel development and producing poisonous mycotoxins. Mechanistic models have been extensively used for plant disease simulation; however, regional disease prediction using these models is difficult because they simplify the heterogeneous plant growth conditions. Herein, we present a remote sensing based Susceptible-Exposed-Infectious-Removed (SEIR) model for regional prediction of FHB occurrence in wheat. Plant properties that are key to the development of FHB are extracted from remote sensing data or data products to initialize or drive the model. Fractional vegetation cover products, time-series curves from satellite images, and vegetation indices were used to indicate plant density, phenology, and vegetation vigor. We applied our model to a plain region in China that suffers greatly from FHB annually. The SEIR model was parameterized by incorporating remote sensing data products, and then calibrated and verified for regional FHB prediction. The model was trained and evaluated by comparing the results of its prediction of FHB incidence to field observations during the susceptible period for wheat; satisfactory results were observed with a correlation coefficient of 0.804, root mean-square error of 0.131, classification accuracy of 0.860, and missed detection rate of 0.035 when the model was initialized with the Optimized Soil Adjusted Vegetation Index (OSAVI). The disease progress curves furnished by our model display an S-shape—a characteristic of polycyclic diseases—which matches the wheat FHB epidemiology. These results indicate that our remote sensing-based SEIR model is promising for the regional prediction of FHB occurrence in wheat.

Minimal impacts on the wheat microbiome when Trichoderma gamsii T6085 is applied as a biocontrol agent to manage fusarium head blight disease.

Fusarium head blight (FHB) is a major fungal disease that causes severe yield and quality loss in wheat. Biological control can be integrated with other management strategies to control FHB. For this purpose, Trichoderma gamsii strain T6085 is a potential biocontrol agent to limit the infection of F. graminearum and F. culmorum in wheat. However, the possible impacts of T. gamsii T6085 on the broader microbiome associated with the wheat plant are not currently understood. Therefore, we identified bacteria and fungi associated with different wheat tissues, including assessment of their relative abundances and dynamics in response to the application of T6085 and over time, using amplicon sequencing. Residues of the prior year’s wheat crop and the current year’s wheat spikes were collected at multiple time points, and kernel samples were collected at harvest. DNA was extracted from the collected wheat tissues, and amplicon sequencing was performed to profile microbiomes using 16S v4 rRNA amplicons for bacteria and ITS2 amplicons for fungi. Quantitative PCR was performed to evaluate the absolute abundances of F. graminearum and T. gamsii in different wheat tissues. Disease progression was tracked visually during the growing season, revealing that FHB severity and incidence were significantly reduced when T6085 was applied to wheat spikes at anthesis. However, treatment with T6085 did not lessen the F. graminearum abundance in wheat spikes or kernels. There were substantial changes in F. graminearum abundance over time; in crop residue, pathogen abundance was highest at the initial time point and declined over time, while in wheat spikes, pathogen abundance increased significantly over time. The predominant bacterial taxa in wheat spikes and kernels were Pseudomonas, Enterobacter, and Pantoea, while Alternaria and Fusarium were the dominant fungal groups. Although the microbiome structure changed substantially over time, there were no community-scale rearrangements due to the T6085 treatment. The work suggests several other taxa that could be explored as potential biocontrol agents to integrate with T6085 treatment. However, the timing and the type of T6085 application need to be improved to give more advantages for T6085 to colonize and reduce the F. graminearum inoculum in the field.

Foliar fungicides provide chemical control of Fusarium head blight of wheat in South Africa

Chemical control of a yield-limiting, quality-reducing wheat disease like Fusarium head blight (FHB) is an important management strategy; however, no fungicides are registered against it in South Africa. The aim of this study was to determine foliar fungicides and seed treatment efficacy for FHB management. Three commercial fungicides and two seed treatments were evaluated in a naturally infested field during 2011 and 2012. Significant interactions between the seed treatments and the foliar fungicides were obtained for FHB incidence and yield. When the fungicide Abacus® was sprayed in combination with either of the two seed treatments, FHB incidence was significantly decreased compared with use of the fungicide alone. Prosaro® sprayed in combination with Galmano® Plus as a seed treatment significantly decreased yield compared with the use of Prosaro alone or in combination with Vitavax® Plus as a seed treatment. The fungicide treatments significantly reduced FHB incidence and the percentage of Fusarium-damaged kernels (%FDK) when compared with control treatments, and significantly increased the yield. A weak but significant correlation was recorded between deoxynivalenol (DON) and %FDK. Strong negative correlations were observed between hectolitre mass (HLM) and FHB incidence and %FDK, respectively, and between yield and %FDK. These results indicate that the chemical control of FHB of wheat can be used to manage the disease in South Africa. Future research, therefore, must focus on integrating chemical control with host resistance to obtain optimal results.

Combining Disease Mechanism and Machine Learning to Predict Wheat Fusarium Head Blight

Wheat Fusarium head blight (FHB) can be effectively controlled through prediction. To address the low accuracy and poor stability of model predictions of wheat FHB, a prediction method of wheat FHB that couples a logistic regression mechanism-based model and k-nearest neighbours (KNN) model is proposed in this paper. First, we selected predictive factors, including remote sensing-based and meteorological factors. Then, we quantitatively expressed the factor weights of the disease occurrence and development mechanisms in the disease prediction model by using a logistic model. Subsequently, we integrated the obtained factor weights into the predictive factors and input the predictive factors with weights into the KNN model to predict the incidence of wheat FHB. Finally, the accuracy and generalizability of the models were evaluated. Wheat fields in Changfeng, Dingyuan, Fengyuan, and Feidong counties, Anhui Province, where wheat FHB often occurs, were used as the study area. The incidences of wheat FHB on 29 April and 10 May 2021 were predicted. Compared with a model that did not consider disease mechanism, the accuracy of our model increased by approximately 13%. The overall accuracies of the models for the two dates were 0.88 and 0.92, and the F1 index was 0.86 and 0.94, respectively. The results show that the predictions made with the logistic-KNN model had higher accuracy and better stability than those made with the KNN model, thus achieving remote sensing-based high-precision prediction of wheat FHB.

Genetics of Fusarium head blight resistance in soft red winter wheat using a genome-wide association study.

Host resistance is an effective and sustainable approach to manage the negative impact of Fusarium head blight (FHB) on wheat (Triticum aestivum L.) grain yield and quality. The objective of this study was to characterize the phenotypic responses and identify quantitative trait loci (QTL) conditioning different FHB resistance types using a panel of 236 elite soft red winter wheat (SRWW) lines in a genome-wide association study (GWAS). The panel was phenotyped for five FHB and three morphological traits under two field and two greenhouse environments in 2018-2019 and 2019-2020. We identified 160 significant marker-trait associations (MTAs) for FHB traits and 11 MTAs for plant height. Eleven QTL showed major effects and explained >10% phenotypic variation (PV) for FHB resistance. Among these major loci, three QTL were stable and five QTL exhibited a pleiotropic effect. The QTL QFhb-3BL, QFhb-5AS, QFhb-5BL, QFhb-7AS.1, QFhb-7AS.2, and QFhb-7BS are presumed to be novel. Pyramiding multiple resistance alleles from all the major-effect QTL resulted in a significant reduction in FHB incidence, severity, index, deoxynivalenol (DON), and Fusarium-damaged kernel (FDK) by 17, 43, 45, 55, and 25%, respectively. Further validation of these QTL could potentially facilitate successful introgression of these resistance loci in new cultivars for improved FHB resistance in breeding programs.

A simple and reliable assay to quantify host resistance and aggressiveness of the pathogen in the Fusarium head blight-barley pathosystem

Abstract A simple and reliable method for quantifying Fusarium head blight (FHB), a widespread disease of barley, would enhance our capacity in identifying resistance sources and highly aggressive isolates. A detached head assay (DHA) was used to reliably assess: (i) resistance of two barley cultivars, Arabi Aswad (AS) and Arabi Abiad (AB) with different susceptibility to FHB and (ii) aggressiveness in a set of 16 fungal isolates of four Fusarium species. The two inoculated cultivars showed different responses in FHB incidence (DI) and severity (DS) using spray and point inoculation on detached barley heads, respectively. On AB, susceptible under several experimental conditions, inoculation with different Fusarium species resulted in significantly higher DI and DS, compared with AS, which showed Fusarium resistance. Furthermore, the values of DI and DS were significantly correlated with the previous findings generated under several experimental conditions. The use of this simple and reliable method in barley breeding programs can speed up the process of identification of sources of resistance to multiple FHB isolates. To our best knowledge, this is the first in-depth report investigating the usefulness of DHA for distinguishing susceptibility of barley plants and aggressiveness of diverse Fusarium species from a breeder's point of view.

Dynamics of Deoxynivalenol and Nivalenol Glucosylation in Wheat Cultivars Infected with Fusarium culmorum in Field Conditions─A 3 Year Study (2018-2020).

Fusarium head blight (FHB) caused by pathogenic species of Fusarium fungi is one of the most important diseases of cereal plants and a factor contributing to losses in plant production. The growth of FHB-associated species is often accompanied by biosynthesis of secondary metabolites─mycotoxins, which serve as a virulence factor. The aim of the study was to evaluate the ratios between deoxynivalenol (DON) and nivalenol (NIV) and their derivatives in the ears of six cultivars of winter wheat with varying resistance to FHB, taking into account a range of factors (weather conditions, location, cultivar, and year) after inoculation with Fusarium culmorum, during a 3 year field experiment, 2018-2020. The presence of toxins in the ears was measured within 21 days of inoculation. The toxins were found in the ears as soon as on the third day from the start of the experiment, whereas relative humidity higher than 80% was a decisive factor for FHB incidence. All wheat cultivars showed the ability to biotransform DON and NIV present in the ears to glucosides, that is, deoxynivalenol-3-glucoside (DON-3G) and nivalenol-3-glucoside (NIV-3G). The levels of these metabolites showed significant correlation with the levels of their basic analogues. In most cases, higher levels of DON and NIV in wheat ears and higher levels of their metabolites were observed, but the relative levels of DON-3G/DON and NIV-3G/NIV at relatively high levels of toxins were lower compared to the ear samples with relatively low toxin levels. The presented results are the first studies, which systematically correlate a variety of wheat cultivars with their extent to glucosylate trichothecenes.