Neoadjuvant hormonal therapy (NHT) does not guarantee a symmetric tumor volume reduction or the absence of peripheral microscopic disease. This study determined the dosimetric impact of IMRT on potential microscopic disease when using a planning CT scan following NHT. Twenty prostate cancer patients were CT-scanned at the start of NHT. A repeat treatment planning CT scan was performed approximately 7 weeks later. Prior to each CT scan, patients were instructed to use an enema to empty their rectums and drink 24–30 ounces of fluid to fill their bladders. A single physician (AKL) contoured the prostate, seminal vesicles (SV), bladder and rectum for each study. NHT began within one week of the first CT scan and consisted of leuprolide 22.5mg IM with concurrent bicalutamide for 14–21 days. IMRT treatment plans were developed for each of the 40 paired CT data sets using an IMRT planning system. The CTV included the prostate and SV. The prostate PTV was expanded 7.6mm laterally, 5.8mm posteriorly, and 6.7mm in all other directions. The SV PTV was expanded 5mm in the anterior and posterior dimensions and 4.2mm in all other dimensions. The prescription dose to the PTV was 75.6Gy given in 42 fractions. Pre-NHT scans (CT-1) were co-registered with the corresponding post-NHT scans (CT-2) based on patient-specific bony anatomy to minimize setup uncertainties for this study. The deliverable leaf sequences for the IMRT plan based on the post-NHT CT images (PLAN-2) were applied to CT-1 (pre-NHT CT) for the same patient. This resulted in a dose distribution on pre-NHT anatomy but using the IMRT plan based on post-NHT anatomy. The pre-NHT plans (PLAN-1) also were applied to CT-2. This resulted in 80 IMRT plans for 20 patients. Quantitative and qualitative changes in organ volume, shape, and dosimetric parameters regarding target coverage and normal tissue were collected. The median interval between scans was 52 days [range 30–109], and the median reduction in prostate volume was 28% [4.5–58%]. There was a correlation between elapsed days and prostate volume reduction (p = 0.033). The mean change in the volumetric center of the prostate from CT-1 vs. CT-2 was 0.02 ± 0.11cm in the lateral direction, −0.070 ± 0.26cm in the AP direction, and 0.23 ± 0.28cm in the SI direction, which suggests asymmetric shrinkage of the prostate gland. Overall, 80% (16/20) of patients had <90% of their pre-NHT PTV covered by 75.6Gy using the post-NHT plan (PLAN-2), 40% (8/20) had <90% of the PTV covered by 70Gy, and 25% (5/20) had <90% covered by 66Gy. Patients with <90% PTV coverage at 70Gy and 66Gy were more likely to have prostate volume reductions of >30% (Fisher exact p < 0.025). Correlation is shown in Fig. 1 for 70Gy. CT planning acquired after NHT may result in significant under-dosing of potential microscopic disease at the periphery of the original tumor bed when using IMRT. The potential for under-dosing was more pronounced in patients that had prostate volume reductions of >30% and was related to HT duration, and was dimensionally unpredictable. Co-registered pre-NHT and post-NHT CT scans should be considered for IMRT planning, especially in patients with locally-advanced prostate cancer.