Improvement Of Agronomic Traits Research Articles

Plasma processed Zn fortification: the next generation sustainable technology for the improvement of agronomic traits of paddy

Plasma processed Zn fortification: the next generation sustainable technology for the improvement of agronomic traits of paddy

Zinc Biofortification of Selective Colored Rice Cultivars: Improvement of Zinc Uptake, Agronomic Traits, and Nutritional Value

It is difficult for ordinary rice to break the zinc-rich standard. However, employing multiple unique rice cultivar resources through biofortification of agronomic measures to achieve the target is a promising attempt. In this study, a pot experiment was conducted on seven different colored rice cultivars (GFHN 166, GFHN 168, GFHN 169, GH 1, GXHZ, GHSZ, and YXN), aiming to analyze the effect on zinc content, growth, quality, and health risk index when spraying zinc (400 g/ha) on the leaves at the heading age. The result indicated that after foliar biofortification treatment, the zinc content and the zinc accumulation of colored rice grains could reach up to 41.55 mg/kg and 2.28 mg/pot, respectively, increased by 43.92% and 65.22%. In addition, the SPAD value and grain protein content was 42.85 and 8.49%, also increased significantly by 2.15% and 2.91%, respectively. Among these, GXHZ and GHSZ could realize the zinc content of polished rice up to 69.7 mg/kg and 55.4 mg/kg, breaking through the standard of zinc-enrich rice (45 mg/kg). GXHZ plant height increased by 11.22%, and the zinc harvest index (6.44%) and zinc use efficiency (26.79%) were the highest. Meanwhile, the biofortification promoted the SPAD value of GHSZ and the protein content of GFHN 166 by 4.95% and 24.81%, respectively. Foliar-applied zinc at the heading stage is a vital practice to get better agronomic indicators, quality, and grain zinc biofortification of colored rice.

Effect of Drought Stress on Agronomic Traits and Total Leaf Proteins in Different Bottle Gourd [<i>Lagenaria siceraria</i> (Molina) Standl.] Genotypes

Breeding drought-tolerant genotypes using genetic and biochemical tools is an important mitigation strategy to improve stress response and yields in bottle gourd [<em>Lagenaria siceraria</em> (Molina) Standl.]. This current study evaluated the variations among bottle gourd genotypes for potential breeding purposes by establishing the relationship between agronomic traits and the protein profile required for the plants’ resilience against drought stress. The study assessed 12 bottle gourd accessions grown under non-stressed (NS) control conditions and different levels of drought stress (DS) induced by withholding irrigation for 7, 14, and 21 days, using a 12 × 2 × 3 factorial experiment in a randomized complete block design with 3 replicates. Agronomic traits such as the total number of male and female flowers per plant, sex ratio, fruit number and fruit yield per plant (FYPP), and total protein analysis were determined in bottle-gourd plants immediately after the period of stress. Results showed significant differences (<em>p</em><em> </em>< 0.001) among the genotypes × environmental effect for most agronomic traits except the number of days to first flower (DTFF). Among the genotypes, BG-70 and BG-78 recorded the highest FYPP under drought stress conditions, with BG-70 showing similar results even under NS conditions. A positive correlation was found among all the agronomic traits and the total protein contents of the genotypes, especially after 14 days of drought stress. Overall, the results implied that the significant improvements in agronomic traits and unique protein expressions observed in BG-70 and BG-78 potentially confer tolerance to drought stress. Moreover, the high and unique proteins found in all genotypes (BG-48, BG-58, BG-52, BG-70, BG-78, and BG-81) warrant further research on their interaction with the stress, especially when coupled with improved agronomic traits, which could assist in identifying drought stress tolerant genotypes.

Overexpression of Gossypium arboreum 3-ketoacyl-CoA synthase 6 (GaKCS6) gene enhanced leaf epicuticle wax in Gossypium hirsutum L. and improved tolerance against whitefly

Cotton Leaf Curl Virus (CLCuV) is a significant threat to cotton production, as it causes Cotton Leaf Curl Disease (CLCuD). Whitefly serves as a vector for the transmission of this virus. It can be controlled by developing barriers against whitefly infestation. The leaf epicuticle wax acts as a protective barrier against whitefly attacks. Research into wax biosynthesis and the fatty acid elongation pathway has highlighted the role of the 3-ketoacyl-CoA synthase (KCS) gene family in producing very-long-chain fatty acids (VLCFAs) in plants. The 3-ketoacyl-CoA synthase 6 (GaKCS6) gene, isolated from the CLCuV-resistant FDH-170 variety of Gossypium arboreum, was cloned under the control of the CaMV35S constitutive promoter and transformed into the CLCuV-susceptible Gossypium hirsutum variety CKC-3 resulting in significantly higher leaf epicuticle wax deposition. Overexpression of GaKCS6 in the transgenic cotton plants was confirmed through quantitative real-time PCR. The transgenic plants not only exhibited average growth but also showed improvements in agronomic traits. Scanning Electron Microscope (SEM) analysis further validated the enhanced leaf epicuticle wax deposition in transgenic plants compared to non-transgenic (control). A free-choice bioassay against whiteflies demonstrated that the transgenic plants remained free of viral infection, as confirmed by real-time PCR. These findings indicate that increased leaf epicuticle wax deposition in transgenic cotton effectively prevents whitefly attacks and the transmission of CLCuV. It suggests that the GaKCS6 gene plays a crucial role in producing leaf epicuticle wax through the VLCFAs biosynthesis pathway.

Application of an endogenous pGhαGloA promoter in CRISPR/Cas12a system for efficient genome editing to creat glandless cotton germplasm

The efficient genome editing tool (the CRISPR/Cas12a system) has been used in research on plant functionional genomics and improvement of agronomic traits. In this study, CRISPR/Cas12a system was optimized by using the endogenous pGhαGloA promoter in cotton. Using this system, crRNAs was driven by the Pol II pGhaGloA promoter to construct the pGhRBE3-pGhαGloA-GhPGF vector and carry out genetic transformation. The vector could work efficiently in all positive transgenic plants and the editing efficiency at the crRNA1 target site was up to 93.37%, and the editing efficiency of the crRNA2 target was up to 88.24%, which is significantly higher in editing efficiency of the pGhRBE3 system with Pol III promoter-Ubi 6.7 promoter, this result indicates that the Pol II promoter is more suitable for expressing multiple sgRNA or crRNA than the pol III promoter in cotton. The vector mainly generated the editing type of fragment deletion and the deletion size was in the range of 3-12 bp with the editing sites spanning at the 14th to 29th bases downstream of the protospacer adjacent motif (PAM). All the targeted mutation loci were stably inherited from T0 to T2 generation and three transgene-free lines with target site mutations of GhPGF gene were obtained and these glandless and gossypol-free/(low contents) cotton germplasm will play key role for healthy cottonseeds oil/cake production. Therefore, the CRISPR/Cas12a system driven by the pGhαGloA promoter can efficiently edit target genes in cotton, which provides a powerful tool for cotton functionional genomics and genetic improvement.

MicroRNA166: Old Players and New Insights into Crop Agronomic Traits Improvement.

MicroRNA (miRNA), a type of non-coding RNA, is crucial for controlling gene expression. Among the various miRNA families, miR166 stands out as a highly conserved group found in both model and crop plants. It plays a key role in regulating a wide range of developmental and environmental responses. In this review, we explore the diverse sequences of MIR166s in major crops and discuss the important regulatory functions of miR166 in plant growth and stress responses. Additionally, we summarize how miR166 interacts with other miRNAs and highlight the potential for enhancing agronomic traits by manipulating the expression of miR166 and its targeted HD-ZIP III genes.

Identification of SnRK2 family and functional study of PeSnRK2.2A and PeSnRK2.2B for drought resistance in Phyllostachys edulis

Bamboo is a typical fast-growing non-timber bioresource in tropical and subtropical forests, yet its vulnerability to drought is one of the facing difficulties in commercial cultivation. The mechanism strategy in response to drought is poorly understood in bamboo plants. This study identified Sucrose non-fermenting 1-related protein kinase 2 s (SnRK2s) in the moso bamboo (Phyllostachys edulis), a group of kinases essential for plant adaptation. The expansion of PeSnKR2 family was driven by gene duplication. 18 PeSnKR2s were categorized into 3 subgroups based on their evolutionary relationships. Cis-elements analysis and expression analysis revealed that PeSnRK2s might be involved in stress resistance through ABA-dependent or ABA-independent pathways. 9 ABA-dependent and 9 ABA-independent PeSnKR2s were defined according to their sensibility to ABA. Furthermore, we examined the function of two ABA-independent SnRK2s, PeSnRK2.2A and PeSnRK2.2B, which were relevantly conserved at protein, transcript, and genomic levels, while showing distinct expression patterns under drought conditions. A transgenic rice study revealed that overexpression of either PeSnRK2.2A or PeSnRK2.2B relieved the overwhelming ROS in leaves to improve rice resistance under drought. The ABA signaling pathway was activated in transgenic rice indicating that PeSnRK2.2A or PeSnRK2.2B regulated tolerance via a conserved ABA-regulated manner downstream. Therefore, we concluded that PeSnRK2.2B and PeSnRK2.2A have similar roles in regulating ABA signals, but respond differently to environmental signals in P. edulis. PeSnRK2.2s represent the potential targets for the improvement of bamboo agronomic traits in the future. This study improves the understanding of drought-resistance mechanisms in moso bamboo and benefits genetic improvement and maintenance of bamboo sustainability.

OsNF-YA8 promotes starch accumulation and influences seed traits by positively regulating starch biosynthesis in rice

The storage substances of rice are critical factors that simultaneously affect grain yield and quality. Starch is the major component in the endosperm, directly affecting the seed yield as well as the cooking and eating quality of grains. Growing evidence suggests that some transcription factors are involved in regulating seed traits and starch biosynthesis. Here, we reveal the role of an NF-Y transcription factor gene, OsNF-YA8, in regulation of seed traits and starch accumulation. OsNF-YA8 encodes a rice NF-YA protein containing the 166-amino acid. The RT-qPCR showed that OsNF-YA8 is expressed in roots, stems, leaves, flag leaves, and panicles, and dramatically increased in panicle during rice filling. Intracellular localization analysis showed that OsNF-YA8 is a nucleus-localized protein. In the OsNF-YA8 overexpression lines, rice grain length increased by 13.80–14.21 %, rice grain thickness decreased by 3.22–6.65 %, and the total starch content increased by 14.70–33.14 %. The overexpression of the OsNF-YA8 also decreased average starch granule size, and changed starch properties. Moreover, OsNF-YA8-overexpression up-regulated the expressions of genes involved in sucrose synthesis/transport and starch synthesis. By contrast, RNAi of OsNF-YA8 decreased the grain length, grain width, 1000 grain weight and starch content of rice seeds, and down-regulated the expressions of genes involved in sucrose synthesis/transport and starch synthesis. These results suggest that OsNF-YA8 enhances starch accumulation and confers seed traits by positively regulating starch biosynthesis in rice. The findings provide a new perspective on genetic improvement of crop agronomic traits and seed quality.

Marker assisted selection reveal SNP deletion mutation in gene associated with cytoplasmic male sterility in Solanumvillosum

Male sterility (MS) is powerful tool for improvement of various traits of economic importance. MS has not been characterized in Solanum villosum, and molecular mechanism underlying mutation change have not yet been studied. In this study, Sanger sequence platform was employed to amplify the MS genic region using mt ATPase marker. The molecular mechanism governing sterility was studied, and the results detected the amplification region at 1150bp. The sequence query was 97 % identical with atp subunit 6 gene loci. Significance mutation detected in this study was deletion GG (delGG) and deletion C (delC) occurring between 536bp and 542bp position in atp6 gene transcript. The mutation score was 16 for delGG and 17 for delC, with a 90 % mutation confidence interval. The study observed that SNP changes due to base deletions in the atp6 gene region were the main cause of male sterility in the studied mutants due to anticipated frameshifts of the open reading frame (ORF) of the mitochondrial atp6 gene, this is regarded as cytoplasmic male sterility type (CMS). Deformed and low pollen count was morphological changes confirmed this study that associated with sterility. Disruption of the ATP synthesis in mitochondria, limits the energy supply for pollen grain formation and anticipated pollen sterility however, mitochondria nuclear gene interaction governing the CMS should be further studied in case of S.villosum. These findings shed-light on molecular mechanism underlying the CMS and can be utilized as a molecular marker for agronomic traits improvement of S.villosum.

A plasma membrane-localized transporter remobilizes aleurone layer magnesium for seed germination in rice.

The aleurone layer in cereal grains acts as a major reservoir of essential mineral nutrients, significantly influencing seed germination. However, the molecular mechanism underlying the redistribution of nutrients from the aleurone layer in the germinating seed is still not well understood. Here, in rice, we identified a plasma membrane (PM) localized magnesium transporter, MAGNESIUM RELEASE TRANSPORTER 3 (MGR3), is critical for seed germination. OsMGR3 is predominantly expressed in the aleurone layer cells of endosperm, facilitating magnesium remobilization during germination. Non-invasive Micro-test Technology assay data demonstrated that the loss-of-function of OsMGR3 restrained magnesium efflux from the aleurone layer. In the embryo/endosperm grafting experiment, we observed that the mutation of OsMGR3 in the aleurone layer suppressed the growth and differentiation of the embryo during germination. Furthermore, magnesium fluorescence imaging revealed the osmgr3 mutant seeds showed impaired exportation of aleurone layer-stored magnesium to the embryo, consequently delaying germination. Importantly, we discovered that disrupting OsMGR3 could inhibit pre-harvest sprouting without affecting rice yield and quality. Therefore, the magnesium efflux transporter OsMGR3 in the aleurone layer represents a promising genetic target for future agronomic trait improvement.

Multiplex-genome-editing based rapid directional improvement of complex traits in rice.

Although thousands of genes have been identified or cloned in rice (Oryza sativa) in the last two decades, the majority of them have only been separately characterized in specific varieties or single-gene modified backgrounds, thus limiting their practical application. We developed an optimized multiplex genome editing (MGE) toolbox that can efficiently assemble and stably express up to twelve sgRNA targets in a single plant expression vector. In this study, we established the MGE-based Rapid Directional Improvement (MRDI) strategy for directional improvement of complex agronomic traits in one small-scale rice transformation. This approach provides a rapid and practical procedure, encompassing sgRNA assembly, transgene-free screening and the creation of promising germplasm, by combining the precision of gene editing with phenotype-based field breeding. The MRDI strategy was used to generate the full diversity of twelve main agronomic genes in rice cultivar FXZ for the directional improvement of its growth duration and plant architecture. After applying the MRDI to FXZ, ideal plants with the desired traits of early heading date reduced plant height, and more effective panicles were generated without compromising yield, blast resistance and grain quality. Furthermore, the results of whole-genome sequencing (WGS), including the analysis of structural variations (SVs) and single nucleotide variations (SNVs) in the MGE plants, confirmed the high specificity and low frequency of unwanted mutations associated with this strategy. The MRDI breeding strategy would be a robust approach for exploring and applying crucial agronomic genes, as well as for generating novel elite germplasm in the future.

Advancements in Genetic Enhancement: CRISPR/Cas-Mediated Genome Editing in Leguminous Crops

Legumes play a crucial role in human nutrition and sustainable agriculture due to their high protein content and health-promoting phytochemicals. To accelerate genetic gain in yield, stress resilience, and nutritional quality, extensive efforts are underway. Recent advancements in genomic resources have paved the way for the application of cutting-edge breeding technologies like genomic selection and genome editing in legume crops. This review focuses on the latest advancements in CRISPR/Cas9-based gene editing technology, specifically tailored for improving traits in legume crops. While successful gene-editing methods have been established for crops like soybean, cowpea, and chickpea, challenges remain, particularly in overcoming the recalcitrance of certain legumes to gene transfer and regeneration in vitro. Strategies to enhance transformation and regeneration rates through modifications in culture methods and DNA delivery are discussed. Despite the potential benefits of gene editing in legume breeding, regulatory barriers pose significant challenges. A comparison of regulatory environments in different regions sheds light on the importance of favourable regulations and public acceptance for realizing CRISPR's potential in enhancing global food security. Additionally, leguminous crops are vital for their nutritional properties, nitrogen-fixing abilities, and contribution to sustainable agriculture. Traditional breeding methods focused on increasing yield, while recent advancements in genome editing techniques, notably CRISPR-Cas technology, have revolutionized the improvement of agronomic traits in legumes. This chapter provides insights into the application of genome editing tools for enhancing traits such as stress tolerance, yield, and seed content in grain legumes. Furthermore, it discusses the challenges and prospects associated with enhancing grain legumes using molecular breeding techniques. Genome editing has been successfully employed in diverse legumes, including model species like Medicago and widely cultivated crops such as soybean and chickpea, offering exciting opportunities for enhancing agronomic characteristics.

Enhancing genome-wide populus trait prediction through deep convolutional neural networks.

As a promising model, genome-based plant breeding has greatly promoted the improvement of agronomic traits. Traditional methods typically adopt linear regression models with clear assumptions, neither obtaining the linkage between phenotype and genotype nor providing good ideas for modification. Nonlinear models are well characterized in capturing complex nonadditive effects, filling this gap under traditional methods. Taking populus as the research object, this paper constructs a deep learning method, DCNGP, which can effectively predict the traits including 65 phenotypes. The method was trained on three datasets, and compared with other four classic models-Bayesian ridge regression (BRR), Elastic Net, support vector regression, and dualCNN. The results show that DCNGP has five typical advantages in performance: strong prediction ability on multiple experimental datasets; the incorporation of batch normalization layers and Early-Stopping technology enhancing the generalization capabilities and prediction stability on test data; learning potent features from the data and thus circumventing the tedious steps of manual production; the introduction of a Gaussian Noise layer enhancing predictive capabilities in the case of inherent uncertainties or perturbations; fewer hyperparameters aiding to reduce tuning time across datasets and improve auto-search efficiency. In this way, DCNGP shows powerful predictive ability from genotype to phenotype, which provide an important theoretical reference for building more robust populus breeding programs.

Insights into Wheat Genotype‒Sphaerodes mycoparasitica Interaction to Improve Crop Yield and Defence against Fusarium graminearum: An Integration of FHB Biocontrol in Canadian Wheat Breeding Programmes.

Fusarium head blight (FHB) is a major threat to wheat crop production and food security worldwide. The creation of resistant wheat cultivars is an essential component of an integrated strategy against Fusarium graminearum, the primary aetiological agent that causes FHB. The results of this study show that the deployment of proto-cooperative interactions between wheat genotypes and mycoparasitic biocontrol agents (BCAs) can improve crop yield and plant resistance in controlling the devastating effects of FHB on wheat agronomic traits. A Fusarium-specific mycoparasite, Sphaerodes mycoparasitica, was found to be compatible with common and durum wheat hosts, thus allowing the efficient control of F. graminearum infection in plants. Four genotypes of wheat, two common wheat, and two durum wheat cultivars with varying FHB resistance levels were used in this greenhouse study. The BCA treatments decreased FHB symptoms in all four cultivars and improved the agronomic traits such as spike number, spike weight, seed weight, plant biomass, and plant height which are vital to grain yield. Conversely, the F. graminearum 3ADON chemotype treatment decreased the agronomic trait values by up to 44% across cultivars. Spike number, spike weight, and seed weight were the most improved traits by the BCA. A more measurable improvement in agronomic traits was observed in durum wheat cultivars compared to common wheat.

S-ABA Enhances Rice Salt Tolerance by Regulating Na+/K+ Balance and Hormone Homeostasis.

In order to explore the regulating role and the physiological and biochemical mechanisms of trans-abscisic acid (hereinafter referred as S-ABA) in the process of rice growth and development under salt stress, we took Chaoyou 1000 and Yuxiangyouzhan as materials and set up three salt concentration treatments, CK0 (Control treatment), N1 (50 mmol L-1 NaCl), and N2 (100 mmol L-1 NaCl), in potted trials; we aimed to study the mechanism of rice's response to salt stress from the perspective of agricultural traits and physiological biochemicals and to improve rice's resistance to salt stress through exogenously applying the regulating technology of S-ABA. The following results were obtained: Under salt stress, the growth of rice was significantly suppressed compared to CK0, exhibiting notable increases in agricultural indicators, photosynthesis efficiency, and the NA+ content of leaves. However, we noted a significant decrease in the K+ content in the leaves, alongside a prominent increase in NA+/K+ and a big increase in MDA (malondialdehyde), H2O2 (hydrogen peroxide), and O2- (superoxide anion). This caused the cytomembrane permeability to deteriorate. By applying S-ABA under salt stress (in comparison with salt treatment), we promoted improvements in agronomic traits, enhanced photosynthesis, reduced the accumulation of NA+ in leaves, increased the K+ content and the activity of antioxidant enzymes, and reduced the active oxygen content, resulting in a sharp decrease in the impact of salt stress on rice's development. The application of S-ABA decreased the endogenous ABA (abscisic acid) content under salt stress treatment but increased the endogenous GA (gibberellin) and IAA (indole acetic acid) contents and maintained the hormonal homeostasis in rice plants. To summarize, salt stress causes damage to rice growth, and the exogenous application of S-ABA can activate the pouring system mechanism of rice, suppress the outbreak of active oxygen, and regulate NA+/K+ balance and hormone homeostasis in the blades, thus relieving the salt stress.

Genetic gains in early maturing maize hybrids developed by the International Maize and Wheat Improvement Center in Southern Africa during 2000-2018.

Genetic gain estimation in a breeding program provides an opportunity to monitor breeding efficiency and genetic progress over a specific period. The present study was conducted to (i) assess the genetic gains in grain yield of the early maturing maize hybrids developed by the International Maize and Wheat Improvement Center (CIMMYT) Southern African breeding program during the period 2000-2018 and (ii) identify key agronomic traits contributing to the yield gains under various management conditions. Seventy-two early maturing hybrids developed by CIMMYT and three commercial checks were assessed under stress and non-stress conditions across 68 environments in seven eastern and southern African countries through the regional on-station trials. Genetic gain was estimated as the slope of the regression of grain yield and other traits against the year of first testing of the hybrid in the regional trial. The results showed highly significant (p< 0.01) annual grain yield gains of 118, 63, 46, and 61 kg ha-1 year-1 under optimum, low N, managed drought, and random stress conditions, respectively. The gains in grain yield realized in this study under both stress and non-stress conditions were associated with improvements in certain agronomic traits and resistance to major maize diseases. The findings of this study clearly demonstrate the significant progress made in developing productive and multiple stress-tolerant maize hybrids together with other desirable agronomic attributes in CIMMYT's hybrid breeding program.

Epigenetics and the improvement of crop plants

Epigenetics is a term that refers to the changes in gene expression that are heritable and induced by DNA methylation, histones post-translational modifications, or sncRNA, not resulting from the DNA sequence rearrangements. Epigenetic modifications influence gene expression, and thus, the plasticity of plants' development and phenotype in response to external and internal factors. Until recently, the only known epigenetic modification of the DNA in eukaryotic organisms was 5-methylcytosine. The growing interest in epigenetics and the development of sensitive detection methods enabled the discovery of other modifications of the DNA nitrogenous bases, i.e., 4-methylcytosine and 6-methyladenine. However, whilst research on the 5mC distribution and role in eukaryotic organisms is widespread, analyses regarding 6mA are scarced. Nevertheless, there are indications of a potential epigenetic role of 6-methyladenine in eukaryotic genomes. Understanding epigenetic mechanisms, which are triggered in response to environmental changes, is crucial for agriculture. This review shows epigenetic mechanisms, with particular emphasis on adenine methylation in plants, as well as the role of epigenetic variation in epibreeding, affecting the improvement of agronomic traits.

Genome-Wide Identification and Expression Analyses of the FAR1/FHY3 Gene Family Provide Insight into Inflorescence Development in Maize.

As transcription factors derived from transposase, FAR-RED IMPAIRED RESPONSE1 (FAR1) and its homolog FHY3 play crucial roles in the regulation of light signaling and various stress responses by coordinating the expression of downstream target genes. Despite the extensive investigation of the FAR1/FHY3 family in Arabidopsis thaliana and other species, a comprehensive examination of these genes in maize has not been conducted thus far. In this study, we employed a genomic mining approach to identify 16 ZmFAR1 genes in the maize inbred line B73, which were further classified into five subgroups based on their phylogenetic relationships. The present study characterized the predicted polypeptide sequences, molecular weights, isoelectric points, chromosomal distribution, gene structure, conserved motifs, subcellular localizations, phylogenetic relationships, and cis-regulatory elements of all members belonging to the ZmFAR1 family. Furthermore, the tissue-specific expression of the 16 ZmFAR1 genes was analyzed using RNA-seq, and their expression patterns under far-red light conditions were validated in the ear and tassel through qRT-qPCR. The observed highly temporal and spatial expression patterns of these ZmFAR1 genes were likely associated with their specific functional capabilities under different light conditions. Further analysis revealed that six ZmFAR1 genes (ZmFAR1-1, ZmFAR1-10, ZmFAR1-11, ZmFAR1-12, ZmFAR1-14, and ZmFAR1-15) exhibited a response to simulated shading treatment and actively contributed to the development of maize ears. Through the integration of expression quantitative trait loci (eQTL) analyses and population genetics, we identified the presence of potential causal variations in ZmFAR1-14 and ZmFAR1-9, which play a crucial role in regulating the kernel row number and kernel volume weight, respectively. In summary, this study represents the initial identification and characterization of ZmFAR1 family members in maize, uncovering the functional variation in candidate regulatory genes associated with the improvement of significant agronomic traits during modern maize breeding.

Dazomet fumigation modification of the soil microorganism community and promotion of Panax notoginseng growth.

Panax notoginseng, a medicinal herb in China, is attacked by several pathogens during its cultivation. Dazomet (DZ) is a soil fumigant that is effective in controlling soil-borne pathogens, but its long-term effects on P. notoginseng growth and soil properties are unknown. We conducted field experiments over two consecutive years to assess the impact of three concentrations of DZ fumigation (35 kg/666.7 m2, 40 kg/666.7 m2, and 45 kg/666.7 m2) on soil physicochemical properties, microbial diversity, and P. notoginseng growth. Correlation analyses were performed between microbial community changes and soil properties, and functional predictions for soil microorganisms were conducted. DZ fumigation increased total nitrogen, total phosphorus, total potassium, available phosphorus, available potassium, and ammonia nitrogen levels in the soil. DZ fumigation promoted the nutrient accumulation and improvement of agronomic traits of P. notoginseng, resulted in a 2.83-3.81X yield increase, with the highest total saponin content increasing by 24.06%. And the 40 kg/666.7 m2 treatment had the most favorable impact on P. notoginseng growth and saponin accumulation. After DZ fumigation, there was a decrease in the relative abundance of pathogenic fungi such as Fusarium, Plectosphaerella, and Ilyonectria, while beneficial bacteria such as Ramlibacter, Burkholderia, and Rhodanobacteria increased. The effects of fumigation on soil microorganisms and soil physicochemical properties persisted for 18 months post-fumigation. DZ fumigation enhanced the relative abundance of bacteria involved in the biosynthesis of secondary metabolites and arbuscular mycorrhizal fungi, reduced the relative abundance of plant-animal pathogenic fungi, reduced the occurrence of soil-borne diseases. In conclusion, DZ fumigation enhanced soil physicochemical properties, increased the proportion of beneficial bacteria in the soil, and rebalanced soil microorganism populations, consequently improving the growth environment of P. notoginseng and enhancing its growth, yield, and quality. This study offers a theoretical foundation for DZ fumigation as a potential solution to the continuous cropping issue in perennial medicinal plants such as P. notoginseng.

Diversity of transgene integration and gene-editing events in wheat (Triticum aestivum L.) transgenic plants generated using Agrobacterium-mediated transformation.

Improvement in agronomic traits in crops through gene editing (GE) relies on efficient transformation protocols for delivering the CRISPR/Cas9-coded transgenes. Recently, a few embryogenesis-related genes have been described, the co-delivery of which significantly increases the transformation efficiency with reduced genotype-dependency. Here, we characterized the transgenic and GE events in wheat (cv. Fielder) when transformed with GROWTH-REGULATING FACTOR 4 (GRF4) and its cofactor GRF-INTERACTING FACTOR 1 (GIF1) chimeric gene. Transformation efficiency in our experiments ranged from 22% to 68%, and the editing events were faithfully propagated into the following generation. Both low- and high-copy-number integration events were recovered in the T0 population with various levels of integrity of the left and right T-DNA borders. We also generated a population of wheat plants with 10 different gRNAs targeting 30 loci in the genome. A comparison of the epigenetic profiles at the target sites and editing efficiency revealed a significant positive correlation between chromatin accessibility and mutagenesis rate. Overall, the preliminary screening of transgene quality and GE events in the T0 population of plants regenerated through the co-delivery of GRF-GIF can allow for the propagation of the best candidates for further phenotypic analysis.