Important Fish Research Articles

Regional Factors Affecting Smallmouth Bass and Largemouth Bass Recruitment in Midwestern USA Reservoirs

ABSTRACTRegional factors correlated with recruitment of black bass (largemouth bass; Micropterus nigricans and smallmouth bass; Micropterus dolomieu), two important fishes, are rarely studied, despite the importance of recruitment variation in influencing fish populations. We sought to identify factors that drove variation in age‐0 and age‐1 black bass abundance. Age‐0 or age‐1 black bass catch per unit effort (CPUE) in reservoirs in Kansas and Illinois, USA, was positively correlated with local short‐term (i.e., mean April precipitation) environmental variables. In contrast, age‐0 or age‐1 black bass CPUE was generally negatively correlated with long‐term environmental variables and river regulation metrics (i.e., reservoir elevation) in the Mississippi and Missouri river reservoirs. Our findings highlight that consideration of spatiotemporal scale is important when managing black bass populations.

The Pattern of Gene Expression (Igf Family, Muscle Growth Regulatory Factors, and Osteogenesis-Related Genes) Involved in the Growth of Skeletal Muscle in Pikeperch (Sander lucioperca) During Ontogenesis

The pikeperch (Sander lucioperca) is an economically important freshwater fish and a valuable food with high market acceptance. It is undergoing important changes in growth and regulatory metabolism during the ontogeny. Hence, the current study aims to investigate the mRNA expression of the growth hormone (gh)/insulin-like growth factor (igf) axis (ghr, igfI, igfbp, igfr), muscle regulatory factors (pax7, myf5, myod, myogenin, mrf, mymk, mstn), and osteogenesis-related genes (colla1a, fib1a, on, op, ostn) from hatching through day 40th post-hatching (DPH). The average total length (TL) of larvae measured at hatching was 3.6 ± 0.4 mm (67 degree days), and at the end of the experiment (40 DPH, 777 degree days), it was 27.1 ± 1.1 mm. The results showed three phases of gene expression in day 0 (egg), larval, and juvenile stages of pikeperch, which can be a progression or transition from the initial state toward the juvenile state. The expression pattern of myf5, mymk, and fib1a genes showed the highest value at day 0. The growth hormone receptor gene (ghr) and igfbp5 were raised to 1 DPH, whereas increased expression of igfI, igfII, igf1bp4, igf1rb, myod2, and mrf4 was detected at 14 DPH. The myod1, pax7, op, ostc, on, igf1ra, and col1a1a genes were highly expressed at 21 DPH and juvenile stages. According to the PLS-DA model, the most relevant VIPs are myf5 and mymk as best markers of earlier stages and igf1ra, ostc, pax7, and ghr as markers of later stages of ontogeny. Results from this study suggest that basal metabolism, growth of body cells and muscles, and bone proliferation and development can be regulated by the dynamic changes in gene expression patterns in this species. The identified genes will help to understand the basic biological process of pikeperch larvae and development, which is very important in pikeperch farming

Transcriptome analysis identifies potential molecular mechanisms for growth of fast muscle in Chinese perch juvenile

Chinese perch (Siniperca chuatsi) is an important commercial fish species in China. Understanding the molecular mechanisms of growth and development of skeletal muscle is helpful for selection breeding and improving the growth rate of Chinese perch. We analyzed histological and transcriptomic differences in fast muscle of Chinese perch between 30 days post hatching (dph) and 60 dph using histological sections and high-throughput RNA-Seq. The results showed that the diameter of muscle fibers in 30 dph Chinese perch was mainly distributed in range of 30 − 40 μm, and that of 60 dph was primarily in the range of 40 − 50 μm. 34 differentially expressed genes (DEGs) were identified in the fast muscle of Chinese perch between 30 and 60 dph, of which 9 were up-regulated and 25 were down-regulated (60 dph vs 30 dph). The DEGs, including MYH4, ENO3, Bag3, krt13 and krt18, are associated with muscle cell differentiation and fusion in Chinese perch. The analysis of the protein–protein interaction network of DEGs revealed that FOS, junb and EGR1 may involve in the development of fast muscle. KEGG enrichment results showed that the up-regulated genes in the 60 dph were associated with several pathways related to metabolism and protein synthesis, such as glycosphingolipid biosynthesis and aminoacyl-tRNA biosynthesis. The results suggest that the development of fast muscle in Chinese perch from 30 to 60 dph is accompanied by an increase in muscle fiber diameter and changes in gene expression related to muscle cell differentiation and protein synthesis.Abbreviations: DEGs, differentially expressed genes; dph, days post hatching; FC, fold change; FDR, False Discovery Rate; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; MyHCs, Myosin heavy chains; qRT-PCR, quantitative real-time PCR.

Acoustic Target Strength Measurement of Larmichthys crocea Based on the Kirchhoff-Ray Mode Model

Larmichthys crocea (L. crocea) is an economically important fish species mainly distributed off the coast of China. In this study, 11 L. crocea samples of different body lengths were collected from aquaculture cages in the East China Sea to measure the acoustic target strength (TS). Using the Kirchhoff-Ray mode (KRM) model, the directional TS of L. crocea was measured at frequencies of 70 kHz, 120 kHz, and 200 kHz. Furthermore, the relationships between TS and body length were determined using the least squares method and the standard b20 equation. The results showed that the TS of L. crocea varied with tilt angle, frequency, and body length. For tilt angles ranging from (−5°, 15°), the equation for fitting TS and body length using the least squares method were TS = 32.99·log10L − 87.36 (70 kHz), TS = 33.26·log10L − 87.77 (120 kHz), and TS = 39.46·log10L − 95.51 (200 kHz). They were expressed in the standard b20 equation as TS = 20·log10L − 71.16 (70 kHz), TS = 20·log10L − 71.23 (120 kHz), and TS = 20·log10L − 71.24 (200 kHz). For tilt angles ranging from (0°, 10°), the equation for fitting TS and body length using the least squares method is TS = 28.69·log10L − 81.71 (70 kHz), TS = 32.30·log10L − 86.44 (120 kHz), and TS = 45.87·log10L − 103.73 (200 kHz). They were expressed in the standard b20 equation as TS = 20·log10L − 70.88 (70 kHz), TS = 20·log10L − 71.10 (120 kHz), and TS = 20·log10L − 71.48 (200 kHz). Moreover, the 18–300 kHz spectral curve showed a decreasing trend in the frequency range from 18 kHz to 30 kHz, while maintaining relatively stable fluctuations in the other frequency ranges. These findings offer a comprehensive understanding of the scattering characteristics of L. crocea and provide a reliable reference of TS for the fishery acoustic assessment of L. crocea.

Combining the uncombinable: corporate memories, ethnobiological observations, oceanographic and ecological data to enhance climatic resilience in small-scale fisheries

The global food production system is increasingly strained by abrupt and unpredictable weather events, which hinder communities' ability to adapt to climate variations. Despite advances in meteorological predictions, many communities lack the academic knowledge or infrastructure to interpret these complex models. This gap highlights the need for solutions that make climate forecasts more accessible and actionable, especially for communities reliant on natural resources. This study explores the potential of enhancing seasonal climate forecasts by integrating local ecological knowledge (LEK) with scientific data. Specifically, we combined ethnobiological information gathered between 2022 and 2024 with existing oceanographic and ecological data to create an ethnobiological calendar for four fishing cooperatives. An ethnographic approach was used to understand the population's ethnobiological knowledge and their perceptions of marine heatwaves and climate change impacts. Coastal monitoring data was collected using moorings that recorded temperature over a 14-year period (2010–2024). To characterize giant kelp dynamics, we used an existing dataset of multispectral Landsat images, which estimates the surface canopy biomass of giant kelp forests. Ecological monitoring was conducted annually every summer from 2006 to 2023 to record the in situ abundance of ecologically and economically important invertebrate and fish species. Combining oceanographic, ecological, and ethnographic data, allowed for alligning fishers' observations with recorded marine heatwave events and ecological shifts. Our findings revealed that these observations closely matched documented marine heatwave data and corresponding ecological changes. The integration of LEK with scientific oceanographic data can significantly improved our understanding of dynamic climate regimes, offering contextually relevant information that enhances the reliability and utility of seasonal climate forecasts. By incorporating yearly data into an ethnobiological calendar, we promote more inclusive, community-based approaches to environmental management, advocating for the integration of LEK in climate adaptation efforts, emphasizing its crucial role in strengthening resilience strategies against climatic shocks.

Gut microbiome as biomarker for triclosan toxicity in Labeo rohita: bioconcentration, immunotoxicity and metagenomic profiling.

Triclosan (TCS) is a lipophilic, broad spectrum antimicrobial agent commonly used in personal care products with a projected continuous escalation in aquatic environments in the post COVID 19 era. There is rich documentation in the literature on the alteration of physiological responses in fish due to TCS exposure; however, studies on gut associated bacteria of fish are still scarce. This is the first attempt to determine changes in bacterial community structure due to exposure of TCS on Labeo rohita, a commercially essential freshwater species, using 16S V3-V4 region ribosomal RNA (rRNA) next-generation sequencing (NGS). Chronic exposure of TCS at environmentally realistic concentrations viz. 1/5th (T1: 0.129 mg/L) and 1/10th (T2: 0.065 mg/L) of LC50 for 28 days resulted in the dose dependent bioconcentration of TCS in the fish gut. Prolonged exposure to TCS leads to disruption of gut bacteria evidenced by down regulation of the host immune system. Additionally, high-throughput sequencing analysis showed alternation in the abundance and diversity of microbial communities in the gut, signifying Proteobacteria and Verrucomicrobia as dominant phyla. Significant changes were also observed in the relative abundance of Chloroflexi and Gammatimonadetes phyla in TCS exposed groups. The study revealed that gut microbiome can be used as a biomarker in assessing the degree of TCS toxicity in commercially important fish species.

The economic impacts of living habitat changes in the Virginia Middle Peninsula, Chesapeake Bay

Living habitats support ecologically and commercially important species but are threatened by anthropogenic stressors, including climate change. The populations of two living habitats in the Chesapeake Bay, Eastern Oyster (Crassostrea virginica) and Eelgrass (Zostera marina), are depleted compared to historical levels, but recent Oyster restoration efforts have created new reef habitat and enhanced existing Oyster reefs. Other animals (e.g., commercially important fish and invertebrates) consume organisms that associate with these living habitats, suggesting the regional economies that rely on the commercial fishing industry may be impacted by changes in living habitat coverage. Ecosystem models were developed for two rivers that have undergone Oyster restoration in the Virginia Middle Peninsula, and simulations were conducted to estimate the potential influence that changes to living habitats may have on commercial fisheries harvests. Additionally, commercial fishers were interviewed to document expenditures needed to link ecological model estimates to an economic input-output model via IMPLAN that estimated the regional economic impacts of these changes. Increases to Oyster and Eelgrass populations are predicted to enhance commercial fisheries populations and in turn, harvests, while decreases to living habitats are predicted to have negative effect on fisheries harvests. The driving factor behind landed value trends is changes with the lucrative Blue Crab (Callinectes sapidus) fishery. The primary expenses of watermen are repairs/maintenance, fuel, and bait, but greater than 37 % of the annual revenue is retained as proprietor and crew income. Oyster reef restoration alone is predicted to increase the regional economic impact of the commercial fishing industry by $1.1 M yr-1 and support 12 more full-time jobs at the end of a 20-year simulation. Oyster restoration in combination with a continued decline of Eelgrass led to a negligible increase (∼$150 K yr-1) in the regional economic impact. Eelgrass restoration to the current management goal without the influence of Oyster restoration is anticipated to elevate the regional economic impact to $16.8 M yr-1 and 152 full-time jobs, and smaller increases to the Eelgrass population, relative to current levels, will still have a positive impact on the regional economy. Combined Oyster and Eelgrass restoration are predicted to enhance economic impacts to the greatest extent, while continued Eelgrass decline is likely to minimize these benefits.

Extreme-Phenotype Genome-Wide Association Analysis for Growth Traits in Spotted Sea Bass (Lateolabrax maculatus) Using Whole-Genome Resequencing.

Spotted sea bass (Lateolabrax maculatus) is an important marine economic fish in China, ranking third in annual production among marine fish. However, a declined growth rate caused by germplasm degradation has severely increased production costs and reduced economic benefits. There is an urgent need to develop the fast-growing varieties of L. maculatus and elucidate the genetic mechanisms underlying growth traits. Here, whole-genome resequencing technology combined with extreme phenotype genome-wide association analysis (XP-GWAS) was used to identify candidate markers and genes associated with growth traits in L. maculatus. Two groups of L. maculatus, consisting of 100 fast-growing and 100 slow-growing individuals with significant differences in body weight, body length, and carcass weight, underwent whole-genome resequencing. A total of 4,528,936 high-quality single nucleotide polymorphisms (SNPs) were used for XP-GWAS. These SNPs were evenly distributed across all chromosomes without large gaps, and the average distance between SNPs was only 175.8 bp. XP-GWAS based on the Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway (Blink) and Fixed and random model Circulating Probability Unification (FarmCPU) identified 50 growth-related markers, of which 17 were related to body length, 19 to body weight, and 23 to carcass weight. The highest phenotypic variance explained (PVE) reached 15.82%. Furthermore, significant differences were observed in body weight, body length, and carcass weight among individuals with different genotypes. For example, there were highly significant differences in body weight among individuals with different genotypes for four SNPs located on chromosome 16: chr16:13133726, chr16:13209537, chr16:14468078, and chr16:18537358. Additionally, 47 growth-associated genes were annotated. These genes are mainly related to the metabolism of energy, glucose, and lipids and the development of musculoskeletal and nervous systems, which may regulate the growth of L. maculatus. Our study identified growth-related markers and candidate genes, which will help to develop the fast-growing varieties of L. maculatus through marker-assisted breeding and elucidate the genetic mechanisms underlying the growth traits.

Identification of sex-specific markers using genome re-sequencing in the blunt snout bream (Megalobrama amblycephala)

BackgroundThe blunt snout bream (Megalobrama amblycephala) is an important economic freshwater fish in China with tender flesh and high nutritional value. With the cultivation of superior new varieties and the expansion of breeding scale, it becomes imperative to employ sex-control technology to cultivate monosexual populations of M. amblycephala, thereby preventing the deterioration of desirable traits. The development of specific markers capable of accurately identifying the sex of M. amblycephala would facilitate the determination of the genetic sex of the breeding population before gonad maturation, thereby expediting the processes of sex-controlled breeding of M. amblycephala.ResultsA whole-genome re-sequencing was performed for 116 females and 141 males M. amblycephala collected from nine populations. Seven candidate male-specific sequences were identified through comparative analysis of male and female genomes, which were further compared with the sequencing data of 257 individuals, and finally three male-specific sequences were generated. These three sequences were further validated by PCR amplification in 32 males and 32 females to confirm their potential as male-specific molecular markers for M. amblycephala. One of these markers showed potential applicability in M. pellegrini as well, enabling males to be identified using this specific molecular marker.ConclusionsThe study provides a high-efficiency and cost-effective approach for the genetic sex identification in two species of Megalobrama. The developed markers in this study have great potential in facilitating sex-controlled breeding of M. amblycephala and M. pellegrini, while also contributing valuable insights into the underlying mechanisms of fish sex determination.

Important fish diversity maintenance status of the tributaries in a hotspot fish conservation area in the upper Yangtze River revealed by eDNA metabarcoding

This study employed Environmental DNA (eDNA) barcoding technology to delve into the influence of the tributaries and mainstem on fish diversity and spatiotemporal distribution in a hotspot fish conservation area in the upper Yangtze River. A total of 123 fish species were detected, belonging to 7 orders, 19 families, and 77 genera. The composition of fish species in tributaries is similar to that in mainstem, with higher fish community diversity in tributaries during the spring and summer. Exploration of fish ecotypes revealed significant differences between mainstem and tributaries. The fish community is mainly influenced by key environmental factors such as water temperature, dissolved oxygen, electrical conductivity, and ammonia nitrogen, with a higher impact of these factors on tributaries than on mainstem. In conclusion, while tributaries and mainstem in the Jiangjin section exhibit similarities in fish community composition, there are notable differences in community structure and diversity. Therefore, the protection of not only mainstem but also tributaries and their associated fish habitats is crucial for promoting the overall health and sustainability.

DiSSCo Flanders and ILVO-CMS: Unlocking and Enhancing the Management of Natural Science Collections in a Belgian Research Institute

Effective management of natural science collections is crucial to maximizing their scientific value. They often contain invaluable items like type specimens and reference material, and data that contributes significantly to our understanding of biodiversity, ecology, and evolution. Research institutes often harbor several smaller collections, which are seldom managed properly, as collection management is not their core business, and because they are not directly connected to the natural science collection community. Recognizing these challenges, DiSSCo Flanders (Distributed System of Scientific Collections) has set out to develop a standardized infrastructure for managing natural science collections, ensuring their proper long-term conservation, and facilitating future reuse (Trekels 2022). Within the DiSSCo Flanders consortium of 14 Belgian institutes, we inventoried the collections utilizing the SYNTHESYS+ survey (Van Baelen 2022) and evaluated their state and management practices using the Collections Self-Assessment Tool (CSAT) (Van Baelen, in preparation). At the Flanders Research Institute for Agriculture, Fisheries and Food (ILVO, Belgium), 15 collections comprising over 558,000 items were cataloged. A significant portion of these, approximately 95%, are marine fish otoliths used for age determination and stock assessments of commercially important fish species. Additionally, ILVO has around 21,000 food- and plant-related items housed within microbial collections. These are instrumental in research related to plant pathology, food spoilage, and biocontrol methods. Furthermore, ILVO maintains several smaller, yet equally important collections. These include insect specimens, macrobenthos reference specimens, an array of seeds and azalea cultivars, marine and agricultural soil samples, and DNA samples from various of the aforementioned collections. To align with the FAIR principles (Findable, Accessible, Interoperable, Reusable) and to connect with the DiSSCo Europe Research Infrastructure, ILVO developed an in-house Collection Management System (CMS). This web application, utilizing a normalized relational database structure, generates dynamic and customizable web pages. It allows users to input, edit, search, and export data through a user-friendly, browser-based interface that supports multiple languages. Data can also be uploaded using custom Microsoft® Excel® templates that conform to the specific data model, ensuring that data is consistently formatted and easily integrable. The back end of the system is responsible for managing the collections and vocabularies (largely aligned with the Darwin Core standard (Darwin Core Task Group. 2009)), while the front end dynamically generates the multilingual user interface and collection-specific vocabularies. This flexibility provides a tailored experience for users based on the specific nature of the collections they are managing, which is particularly important for an institute like ILVO, with diverse collections that require different terminologies and data structures. ILVO-CMS also boasts features that extend beyond basic data management. Users can attach documents and pictures; they can create relationships between items; there are functionalities for referencing other databases; and the system is able to track transactions, such as loans. Though custom-developed for ILVO, the platform’s adaptability enables easy customization and implementation for other institutes and (smaller) collections globally. The usage of ILVO-CMS at ILVO will significantly improve the management, organization, accessibility, and exchangeability of the collections, enhancing their scientific value. By implementing such a comprehensive management tool, ILVO is better positioned to ensure that the collections are not only preserved for future generations but also readily available for ongoing and future research projects. One of the key future goals for ILVO-CMS is the incorporation of 3D images. These virtual representations of physical items will enhance the ability to study and share specimens, through their 3D images, without the need for physical handling, thereby reducing the risk of damage or loss. Additionally, we are committed to the further development of a user-friendly interface to facilitate the (re-)use of ILVO collections, both internally and externally. This includes integrating and updating features based on user feedback and linking a taxonomic backbone, such as that of the Global Biodiversity Information Facility (GBIF Secretariat 2023). ILVO’s experience demonstrates that through opportunities like DiSSCo Flanders, which bring in temporary funding and promote a culture of collaboration, research institutions without public-oriented collections may contribute to global natural science collections.

Assessment of climatic and environmental parameters on fish abundance of an afro-tropical reservoir

This study assessed the impacts of climatic parameters (rainfall and temperature) and environmental variables (transparency, depth, chloride, TS, TSS, TOC) on the abundance of commercially important fish species in Esa-Odo. The research question was to find out if climatic and environmental factors influence the abundance of fish species in an afro-tropical reservoir. Fish species were collected on a monthly basis for two annual cycles covering both dry and rainy seasons. GIS-based climatic data was used to determine the relationship between climatic conditions and fish species abundance. Results showed that the highest abundance of fish was recorded during the rainy season, with Oreochromis niloticus being the most dominant species throughout the sampling period. Trend analysis revealed that variations in climate and environmental parameters influenced the abundance of different fish species in the reservoir. Mann-Kendal analysis indicated that an increase in rainfall led to an increase in reservoir depth, a decrease in transparency levels, and a reduction in temperature, with a Sen’s slope value of -38. Additionally, CCA and correlation matrix results demonstrated that climate and environmental parameters significantly influenced fish species abundance. The study emphasized the importance of climatic and environmental factors in the abundance of fish species in the reservoir, providing valuable information for future research on fishery resources. Governments and stakeholders were urged to prioritize the conservation and management of the reservoir’s fish population to prevent declines.

Embryonic and larval development of black jewfish, Protonibea diacanthus: A new candidate for aquaculture in northern Australia

Black jewfish Protonibea diacanthus is a large, commercially important fish distributed across the tropical Indo-Pacific. In Australia, there is an established commercial wild fishery for the species but it’s aquaculture potential has not been investigated. This research presents hatchery production of native P. diacanthus in Darwin, Australia and documents ontogeny of early life stages of this species over three trial runs. Wild P. diacanthus were induced to spawn with luteinizing hormone-releasing hormone analog (LHRHa) and eggs were released approximately 25–28 h after injection (0.88 ± 0.01 mm in diameter with oil globule 0.24 ± 0.01 mm). Larvae hatched 12 h after spawning. At one day post hatch (dph) larvae were 2.68 ± 0.01 mm standard length with 0.15 ± 0.01 mm oil globule diameter. Larvae mouths opened at 31 h post hatch (hph) and first feeding was seen at 57 hph. Swim bladder inflation (92 %) occurred between 40 and 62 hph. Larvae were progressively fed rotifers, Artemia and Otohime microdiet, and metamorphosis occurred between 20 and 25 dph, completing as they reached over 13 mm standard length. Tail biting cannibalism began with the onset of metamorphosis and caused significant mortality until approximately 24 dph when metamorphosed juveniles could be handled and moved to low stocking density systems. This study demonstrates that northern Australian P. diacanthus is amenable to hatchery production and provides important foundational knowledge for this emerging aquaculture species.

Variation in the gut microbiota during the early developmental stages of common carp (Cyprinus carpio L.) and its correlation with feed and pond water microflora

BackgroundFish gut microbiota undergo dynamic changes under the influence of many factors and play an important role in the nutrition, immunity and development in fish. Although common carp (Cyprinus carpio L.) is an economically important freshwater fish, there are few reports on its gut microbiota changes at different early developmental stages. In the present study, the gut microbiota of common carp during the early developmental stages and its correlation with the feed and pond water flora were studied using the Illumina MiSeq sequencing platform.ResultsThe results showed that the gut microbiota of common carp underwent continuous and mild changes over the development process, and the pond water environment might provide bacterial resources and have a certain influence on the changes in the gut microbiota of common carp. However, host selection pressure played a more important role in shaping the gut microbiota. Although the gut microbiota was affected by many factors, the presence of core microbiota indicated that some bacterial species adapt to the gut microenvironment of common carp and played a role in its growth process.ConclusionsThe dynamic changes of gut microbiota of carp in early development stage were related to the feed, water environment and host selection. The results of this study provide a theoretical basis for healthy farming and disease prevention of common carp.

Unveiling the Molecular Mechanisms Regulating Muscle Elasticity in the Large Yellow Croaker: Insights from Transcriptomics and Metabolomics.

The large yellow croaker (Larimichthys crocea) is an important economic fish in China. However, intensive farming practices, such as high stocking densities, suboptimal water quality, and imbalanced nutrition, have led to a decline in muscle quality. Muscle elasticity is a key texture property influencing muscle quality. Herein, transcriptomic and metabolomic analyses were performed on four groups: male high muscle elasticity (MEHM), female high muscle elasticity (MEHF), male low muscle elasticity (MELM), and female low muscle elasticity (MELF), to explore the molecular regulation underlying muscle elasticity in the large yellow croaker. Transcriptomics identified 2594 differentially expressed genes (DEGs) across the four groups, while metabolomics revealed 969 differentially expressed metabolites (DEMs). Association analysis indicated that the valine, leucine, and isoleucine biosynthesis pathways were significantly enriched between the MELF and MEHF groups; 2-Oxoisovalerate and L-Valine were DEMs; and the gene encoding L-threonine ammonia-lyase was a DEG. In the MELM and MEHM groups, pathways such as arginine biosynthesis; arginine and proline metabolism; and valine, leucine, and isoleucine degradation were significantly enriched. 4-guanidinobutanoate, L-aspartate, N-acetylornithine, and L-leucine were among the DEMs, while the DEGs included glul, gls, srm, hmgcs, and aacs. These findings provide insights into the molecular mechanisms controlling muscle elasticity, representing a theoretical foundation to breed high-quality large yellow croakers.

Short-term discard survival and catch-related trauma in European plaice (Pleuronectes platessa) caught in the Baltic Sea by Danish seine during summer

Danish seine is an active fishing gear targeting demersal species, such as European plaice (Pleuronectes platessa, hencefort referred as plaice), a commercially important fish species in the North Sea, Skagerrak, Kattegat, and Baltic Sea. Danish seining is a relevant fishery in relation to exemption from the European Union landing obligation. Trials were conducted from a commercial fishing vessel during the summer with high air temperatures and sea salinity and marked salinity and temperature gradients (pycnocline). Video equipment was used to observe fish entering the seine. Captured fish were individually tagged and housed in livewells for ten days to observe short-term survival. Reflex impairments and external injuries were assessed after capture and at the end of the observation periods using reflex action mortality predictor (RAMP) and catch-damage index (CDI) methodologies. We found that plaice entered the seine late in the towing process and that 87 % of the assessed fish survived, after 10 days of observation. There was a significant difference in short-term survival curves for fish that had been subjected to more than 30 min of on-deck during the catch-sorting process relative to those that had remained on deck for 30 min or less. The association between the time on deck and RAMP scores after capture was also significant. External injuries were primarily minor bruises, fin fraying, and net marks and changed little from after capturing to the end of the observation period.

The mechanisms of effects of oil-derived polyaromatic hydrocarbons on cardiac electrical activity in navaga cod (Eleginus nawaga)

The intensive development of oil and gas industries in the Arctic threatens Arctic aquatic ecosystems. The toxic and primarily lethal cardiotoxic effects of oil in living organisms are believed to be associated with polyaromatic hydrocarbons (PAHs), and previous works revealed the electrophysiological mechanisms of action of individual oil-derived PAHs. However, the physiological effects of a complex PAHs mixture in oil water-soluble fraction (WSF) have not been previously studied. This study is focused on the effects of oil WSF on electrical activity and major ionic currents in the working myocardium of navaga (Eleginus nawaga), which is one of the most important commercial fish species in the Arctic. We found that 1% and 10% solutions of oil WSF cause a marked increase in the duration of action potentials (APs) in navaga cardiomyocytes. This effect appears to be due to the suppression of rapid delayed rectifying current IKr (IC50 about 3% in ventricular and atrial myocardium). At higher concentrations, oil WSF also suppressed calcium current ICaL (IC50 = 10.6%), which led to a decrease in the contractile activity in isolated myocardial preparations. Unlike individual tricyclic PAHs, oil WSF did not affect fast sodium current INa and AP upstroke velocity. An assessment of the content of tricyclic PAHs in 10% solution of oil WSF showed that their total concentration is relatively low and does not exceed 100 nM. Thus, oil WSF also has a powerful cardiotoxic effect in fish myocardium, but its effects differ from the previously studied effects of tricyclic PAHs and suggest the presence of yet unexplored oil compounds that have a more powerful toxic potential against ERG channels.

Winter distribution of zooplankton and ichthyoplankton assemblages in the North Sea and the English Channel.

Although zooplankton were extensively studied in the North Sea, knowledge about winter zooplankton assemblages is still scarce, despite potential influence of zooplankton overwintering stocks on seasonal plankton succession and productivity. Furthermore, several economically and ecologically important fish species reproduce during winter contributing to the zooplankton community as passive members (eggs) or predators (larvae). To elucidate on winter zooplankton distribution, abundance and composition in the Southern North Sea and Eastern English Channel, we defined assemblages based on mesozoo- and ichthyoplankton data sampled between January and February 2008 using fuzzy-clustering and indicator species. Mesozoo- and ichthyoplankton (eggs+larvae) were integrated in a common analysis by using a spatial grid adapted to the datasets and defined by means of a geostatistical method developed in agronomics. Potential environmental drivers of assemblage distribution were evaluated by means of GLMM and comparison with data from 2022 facilitated insight about the inter-annual representativeness of the assemblages. Five zooplankton assemblages were found varying with regard to total zooplankton abundance, dominant and indicator taxa. Spatial variability of abiotic (dissolved nutrients, salinity, depth, temperature, organic matter in suspension, chlorophyll a), biotic variables (phyto- and microplankton composition), water masses and fish spawning grounds were revealed as potential drivers of assemblage distribution. Assemblages off the Rhine-Scheldt estuary and in the German Bight harbored the biggest zooplankton overwintering stocks that might influence the grazing pressure on phytoplankton spring production. Assemblages off the Rhine-Scheldt estuary and covering the English Channel and the Southern Bight were found to be of high importance for herring and plaice larvae. Although further analyses suggested inter-annual representativeness of the assemblages found (2008 vs 2022), the assessment of further years would be necessary to account for potential inter-annual variability. Future studies could profit from the assessment of microzooplankton facilitating insight in fish larvae feeding potential and zooplankton overwintering strategies.

Advances in understanding physical and biological controls on eggs and larval distribution in Pacific fisheries: A review

The early stages of fish, comprising eggs and larvae, are exceptionally fragile and sensitive to environmental dynamics and climate change. Pacific Ocean (PO) currents play an important role in shaping the distribution of marine organisms, influencing global climate patterns, heat distribution, coastal temperatures, and nutrient redistribution. These currents reveal significant changes within the climate system. Their variability across different timescales can be attributed to the complex interplay of physical forces. These currents are subjected to diverse anthropogenic factors, exerting detrimental effects on the dispersal of fish larvae. Furthermore, climate change variables, including alterations in tropical PO temperature associated with the ENSO cycle, Atlantic Nino modes influencing equatorial Atlantic temperature, changes in ocean salinity, polar ice cap melting, increasing greenhouse gases, marine heatwaves, and fluctuations in subsurface flows, directly impact the distribution, abundance, and species composition of early life stages. Major Pacific fisheries, such as those targeting Pacific sardines, saury, and anchovies, undergo population booms and declines due to significant alterations in the current dynamics of currents and fronts within the PO. The anticipated intensification of the ENSO cycle, characterized by more frequent and severe El Niño (warm) and La Niña (cold) events as a result of climate change, is expected to significantly impact the early developmental stages of important commercial fish stocks regularly. This review synthesizes the current understanding of the physical and biological parameters driving changes in ocean currents and their implications for early fish dispersion, emphasizing the critical need for research in this area to inform global conservation efforts, fisheries management, and food security.

Otolith Microchemistry Reveals the Diversity of Migration Patterns and Spawning Ground Distribution of Coilia nasus from the Yangtze River Estuary

Coilia nasus are an important fish resource in the Yangtze River, and the Yangtze River Estuary is a crucial migration pathway for them. In this study, we used otolith microchemistry to analyze the strontium/calcium (Sr/Ca) ratios and Sr contents in the sagitta otolith of C. nasus from the south branch (SB) and north branch (NB) of the Yangtze River Estuary and obtained the diversity of migration patterns and spawning ground distribution for C. nasus. The results indicate that C. nasus from both branches include two types of habitat history: freshwater (F)–brackish water (B) (Type I) and F-B seawater (S) (Type II), with Type I being dominant at 62.50% in both branches. The C. nasus from the SB comprise six migration patterns, while that from the NB has seven migration patterns. The C. nasus from both branches hatch in F habitats. At the time of capture, the C. nasus from the SB predominantly remain in F, accounting for 62.5%, while C. nasus from the NB primarily stay in B, accounting for 87.5%. Throughout the migration process, C. nasus from both branches switch between different habitats, with C. nasus from the NB exhibiting more frequent transitions between F and B, showing a greater reliance on the estuarine brackish habitat. The radius of the first blue region near the core (Lf) and freshwater coefficient (Fc) of the otolith for C. nasus from both branches are divided into three groups: long-distance freshwater dependence (LD), medium-distance freshwater dependence (MD), and short-distance freshwater dependence (SD), with the LD only appearing in the SB, while the NB is primarily represented by MD. There is a correlation between the differences in Lf among different groups of C. nasus and the differences in the distance from the spawning grounds of C. nasus in different sections of the Yangtze River to the estuary (DYRE), reflecting the distribution pattern of C. nasus spawning grounds in different sections of the Yangtze River. This study provides theoretical guidance for the protection of migration pathways and maintenance of spawning grounds for C. nasus, which have significant practical value in the precise management of C. nasus resources in the Yangtze River Estuary.