Important Crop Research Articles

Expanding the Triangle of U: Comparative analysis of the Hirschfeldia incana genome provides insights into chromosomal evolution, phylogenomics and high photosynthesis-related traits.

The Brassiceae tribe encompasses many economically important crops and exhibits high intraspecific and interspecific phenotypic variation. After a shared whole-genome triplication (WGT) event (Br-α, ~15.9 million years ago), differential lineage diversification and genomic changes contributed to an array of divergence in morphology, biochemistry, and physiology underlying photosynthesis-related traits. Here, the C3 species Hirschfeldia incana is studied as it displays high photosynthetic rates under high-light conditions. Our aim was to elucidate the evolution that gave rise to the genome of H. incana and its high-photosynthesis traits. We reconstructed a chromosome-level genome assembly for H. incana (Nijmegen, v2.0) using nanopore and chromosome conformation capture (Hi-C) technologies, with 409Mb in size and an N50 of 52Mb (a 10× improvement over the previously published scaffold-level v1.0 assembly). The updated assembly and annotation was subsequently employed to investigate the WGT history of H. incana in a comparative phylogenomic framework from the Brassiceae ancestral genomic blocks and related diploidized crops. Hirschfeldia incana (x=7) shares extensive genome collinearity with Raphanus sativus (x=9). These two species share some commonalities with Brassica rapa and B. oleracea (A genome, x=10 and C genome, x=9, respectively) and other similarities with B. nigra (B genome, x=8). Phylogenetic analysis revealed that H. incana and R. sativus form a monophyletic clade in between the Brassica A/C and B genomes. We postulate that H. incana and R. sativus genomes are results of hybridization or introgression of the Brassica A/C and B genome types. Our results might explain the discrepancy observed in published studies regarding phylogenetic placement of H. incana and R. sativus in relation to the "Triangle of U" species. Expression analysis of WGT retained gene copies revealed sub-genome expression divergence, likely due to neo- or sub-functionalization. Finally, we highlighted genes associated with physio-biochemical-anatomical adaptive changes observed in H. incana which likely facilitate its high-photosynthesis traits under high light. The improved H. incana genome assembly, annotation and results presented in this work will be a valuable resource for future research to unravel the genetic basis of its ability to maintain a high photosynthetic efficiency in high-light conditions and thereby improve photosynthesis for enhanced agricultural production.

Genome-wide identification of CAMTA genes and their expression dependence on light and calcium signaling during seedling growth and development in mung bean

BackgroundCalmodulin-binding transcription activator (CAMTA) is comprised of a group of transcription factors and plays an important role in the Ca2+ signaling pathway, mediating various molecular responses via interactions with other transcription factors and binding to the promoter region of specific genes. Mung beans (Vigna radiata) are one of the most commonly consumed commodities in Asia. To date, CAMTA proteins have not been characterized in this important crop plant.ResultsEight paralogous VrCAMTA genes were identified and found to be distributed on five of the 11 chromosomes. The proteins possessed CG-1 DNA-binding domains with bipartite NLS signals, ankyrin domains, CaM-binding IQ motifs, and CaM-binding domain (CaMBD). The 2 kb upstream regions of VrCAMTA genes contained sequence motifs of abscisic acid-responsive elements (ABRE) and ethylene-responsive elements (ERE), and binding sites for transcription factors of the bZIP and bHLH domains. Analysis of RNA-seq data from a public repository revealed ubiquitous expression of the VrCAMTA genes, as VrCAMTA1 was expressed at the highest level in seedling leaves, whereas VrCAMTA8 was expressed at the lowest level, which agreed with the RT-qPCR analysis performed on the first true leaves. On day four after leaf emergence, all VrCAMTA genes were upregulated, with VrCAMTA1 exhibiting the highest degree of upregulation. In darkness on day 4, upregulation was not observed in most VrCAMTA genes, except VrCAMTA7, for which a low degree of upregulation was found, whereas no difference was found in VrCAMTA8 expression between light and dark conditions. Treatment with calcium ionophores enhanced VrCAMTA expression under light and/or dark conditions at different times after leaf emergence, suggesting that calcium signaling is involved in the light-induced upregulation of VrCAMTA gene expression.ConclusionsThe expression dependence of nearly all VrCAMTA genes on light and calcium signaling suggests their possible differential but likely complementary roles during the early stages of mung bean growth and development.

Herbicide Combinations for Effective Weed Management in Rice

Rice (Oryza sativa L.) is the most important food crop catering half of the world’s population. India being the second largest producer of rice, needs to produce around 120 million tons of rice by 2030 to feed its one and a half billion plus population. Weeds are undoubtedly a major biotic constraint to rice production in most of the rice growing areas of the world. Rice fields are very often characterized by a complex plurispecific weed flora, comprising of grasses, sedges, and broad-leaved weeds (BLWs). They usually grow faster than rice and absorb available water and nutrient earlier than the rice and suppress rice growth. Cultural and mechanical methods of weed management in general, are time consuming, cumbersome and laborious apart from being less effective because of chance of escape and regeneration of weeds from roots or rhizome that are left behind. Herbicides offer the most effective, economical and practical way of weed management. Since rice ecosystems usually harbours a variety of weeds, the use of a single herbicide cannot give satisfactory results. Moreover, continous use of such herbicides leads to the evolution of weeds resistant to several herbicides. Therefore, more convenient option would be single shot application of ready mix or tank mix combination of herbicide. The herbicide mixtures broaden the spectrum of weed control in single application. The ideal herbicide combinations are those that effectively target the weed species while minimizing toxicity to crops, thereby exhibiting enhanced selectivity. Using herbicide combinations allows for reduced herbicide use rates compared to using a single herbicide. Additionally, apart from providing broad-spectrum weed control, herbicide combinations reduce the herbicide load in the environment and minimize application costs. Among the various combination herbicides available, the ones having pre-emergence and post-emergence herbicides combined had shown better weed control with single shot application at reduced cost. Some of the ready-mix herbicide combinations that are gaining greater importance includes Pretilachlor + Pyrazosulfuron-ethyl, Pendimethalin + Penoxsulam and Butachlor + Penoxsulam.

Comparative Analysis of Some Morpho-cultural Characters of Venturia inaequalis (Apple Scab Pathogen) under Kashmir Conditions

Apple (Malus × domestica Borkh.) represents one of the most widely cultivated and economically important temperate fruit crops in the world. However, its cultivation faces significant challenges due to various fungal pathogens, particularly apple scab inflicted by Venturia inaequalis, which has a profound impact on the yield and quality of apple, resulting in substantial economic loss. The pervasive nature of V. inaequalis and its ability to damage crops poses a serious threat to sustainable apple production. In this study, the morpho-cultural characteristics of V. inaequalis were systematically analyzed and compared between the Shopian and Baramullah districts of the Kashmir Valley. Ten isolates from each district were grown on Malt Extract Agar (MEA) and Potato Dextrose Agar (PDA) for comparative analysis. The colonies were characterized by a compact hue ranging from greyish-green to blackish and exhibited a densely velvety texture. Mycelial growth was predominantly aerial, with some isolates displaying partial irregularity in colony margins, while others exhibited greater uniformity. The mean colony radii for potato dextrose agar and malt extract agar media was measured as 23.01 mm and 28.50 mm for the Shopian district, and 28.09 mm and 33.33 mm for the Baramullah district, respectively. The mean conidial spore density was recorded at 27.87 spores/cm² for the Baramullah district and 34.67 spores/cm² for the district Shopian, respectively. This variation could be attributed to several factors, including genetic diversity within the pathogen populations, differences in altitude, climate, and other environmental factors, the selection pressure exerted by fungicide applications, the emergence of novel pathogen races, and phenotypic plasticity driven by the differing agricultural practices and microclimatic conditions in the respective regions.

Identification and Characterization of Bipolaris secalis and B. setariae Associated with Brown Stripe Disease on Saccharum officinarum in Yunnan, China.

Sugarcane (Saccharum officinarum L.) is the most important sugar crop that belongs to the Poaceae family and is mainly cultivated in tropical and subtropical regions worldwide. Brown stripe disease is a common and serious foliar fungal disease of sugarcane and has become a serious threat to sugarcane production in China. Yunnan Province is the second-largest sugar base in China. From 2022 to 2023, brown stripe-like symptoms from different sugarcane variety were observed in Yunnan. Thirty-nine Bipolaris-like isolates were obtained from symptomatic leaves of different sugarcane varieties and characterized by means of morphological identification combined with multilocus phylogeny comprising internal transcribed spacer rDNA (ITS), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and the translation elongation factor-1α (TEF-1α) gene sequence date. The analysis provided strong support for the delineation and identification of two Bipolaris species associated with sugarcane brown stripe, including Bipolaris secalis and B. setariae. Pathogenicity text in potted sugarcane plants confirmed that these two Bipolaris species can cause brown stripe of sugarcane, thus fulfilling Koch's postulates. This study confirmed that B. secalis and B. setariae were the pathogens of brown stripe in Yunnan Province. To the best of our knowledge, this is the first to report B. secalis as causal agents of brown stripe of sugarcane. Collectively, this finding provides a basis for sugarcane brown stripe disease accurate diagnosis and would be helpful to the development of effective management strategies.

OsPP2C49, a Negative Regulatory Factor in the Abscisic Acid Signaling Pathway, Positively Regulates Grain Yield in Rice

Clade A type 2C protein phosphatases (PP2Cs) are crucial components of the abscisic acid (ABA) signaling pathway. Research on clade A PP2Cs has focused more on their roles related to ABA signaling and stress responses than on the molecular mechanisms mediating their effects on plant growth and grain yield. Rice (Oryza sativa L.) is an important food crop worldwide. We previously determined that OsPP2C49, which encodes a rice clade A PP2C family member, negatively controls rice responses to drought, salt, and high-temperature stresses. In this study, we investigated the regulatory effects of OsPP2C49 on ABA responses and rice grain yield. By analyzing potential interactions with core ABA components, including pyrabactin resistance 1 (PYR1)/PYR1-like (PYL)/regulatory component of the ABA receptor (RCAR) and stress-activated protein kinases (SAPKs), we confirmed that OsPP2C49 is involved in the ABA signaling pathway. OsPP2C49 overexpression led to decreased ABA sensitivity and increased rice grain yield; the opposite phenotypes were observed in the ospp2c49 knockout mutants. Therefore, OsPP2C49 negatively regulates ABA responses, but positively modulates rice grain yield. Furthermore, we found that OsPP2C49 can interact with and dephosphorylate five OsSAPKs in vitro. Unlike OsPP2C49, these OsSAPKs positively modulate ABA responsiveness, but negatively affect rice yield. These findings indicate that OsPP2C49 may partially regulate ABA responses and rice grain production by dephosphorylating OsSAPKs. This study preliminarily explored the molecular basis of the regulatory effects of OsPP2C49 on rice plant growth and grain yield.

Allelopathic Molecular Mechanisms of the Two Main Allelochemicals in Sweet Potato

Sweet potato (Ipomoea batatas L.) is one of the most important global food crops. This crop exhibits excellent allelopathic potential against various weeds, but its allelopathic mechanism at the molecular level is unclear. Therefore, metabolomic and transcriptomic analyses were performed to explore the allelopathic effects, metabolic pathway, and associated genes for two major compounds with allelopathic activity, palmitic acid and linoleic acid. The sweet potato variety Ningshu 25 was employed in the current study. The results showed that palmitic acid and linoleic acid had strong allelopathic effects on seed germination, plant growth, antioxidant enzyme activity, and chlorophyll content of two weeds Digitaria sanguinalis and Bidens pilosa. The content of the two targeted metabolites was affected by different environmental conditions and was significantly increased under low temperature (15 °C). Five metabolic pathways involved in the two targeted metabolites of fatty acids were found: fatty acid biosynthesis, fatty acid elongation, fatty acid degradation, biosynthesis of cutin, suberine, and wax, and the linoleic acid metabolism pathway. The synthesis of palmitic acid is significantly enriched in the biosynthesis pathways of fatty acids, cutin, suberine, and wax, and the synthesis of linoleic acid is significantly enriched in the linoleic acid metabolism pathway. Under different environmental conditions, there were three key genes expressed—g4988, g11881, and g19673—located in the biosynthesis pathways of cutin, suberine, and wax; four key genes expressed—g31191, g60956, g49811, and g59542—located in the biosynthesis pathway of fatty acids; and six key expressed genes—g26575, g24787, g23517, g57649, g58562, and g4314—located in biosynthesis pathway of linoleic acid, respectively. Our study advances understanding of the molecular mechanisms behind allelopathic traits in sweet potato and provides a set of candidate genes for use in improving allelopathic potential in sweet potato germplasm resources.

Survey of Rice Sheath Blight Disease in Kuttanad and Effect of Biocontrol Agents and Fungicides against Rhizoctonia solani

Aims: Rice is an important crop cultivated worldwide, whose production is influenced by numerous factors like pest, disease, weather parameters. In India, diseases accounts for 35 per cent in yield reduction, with sheath blight being significant. This disease is notably prevalent in Kuttanad region of Kerala. This study involves a survey conducted in Kuttanad to assess the extent of the disease and in vitro management using biocontrol agents and fungicides. Study Design: Study was outlined in Completely Randomised Design (CRD) to evaluate the in vitro efficacy of bioagents. Place and Duration of Study: Department of Plant Pathology, College of Agriculture, Vellayani and M.S. Swaminathan Rice Research Station, Moncompu, between 2022 and 2023 Methodology: Survey was conducted in forty locations of Kuttanad in which the disease incidence was recorded and samples were collected. The isolates obtained were tested for pathogenicity by artificial inoculation on rice variety, Uma. Cultural characteristics of isolates were studied. The virulent culture obtained was further advanced for the in vitro studies with biocontrol agents and fungicides. The inhibition of fungal growth was also recorded. Results: Forty isolates of sheath blight pathogen (Rhizoctonia solani) were obtained. The virulent isolate among these was identified on the basis of number of days taken for symptom development by artificial inoculation and this was further advanced for the in vitro studies. Bacillus amyloliquefaciens was found to be more effective with an inhibition percentage of 68.64. Among the tested fungicides, Kresoxim methyl 40% + Hexaconazole 8% WG showed cent per cent growth inhibition of pathogen at 500 and 1000 ppm concentrations which was on par with Azoxystrobin 18.2% + Difenoconazole 11.4% SC at 1000 ppm. Conclusion: From this study, it can be concluded that, that these biocontrol agents and fungicides are very effective in the management of the pathogen and hence can be used for further field-level studies in management of the disease.

Identifying and quantifying the contribution of maize plant traits to nitrogen uptake and use through plant modelling

Abstract Breeding for high nitrogen use efficient crops can contribute to maintaining or even increasing yield with less nitrogen. Nitrogen use is co-determined by N uptake and physiological use efficiency (PE, biomass per unit of N taken up), to which soil processes as well as plant architectural, physiological and developmental traits contribute. The relative contribution of these crop traits to N use is not well known but relevant to identify breeding targets in important crop species like maize. To quantify the contribution of component plant traits to maize N uptake and use, we used a functional-structural plant model. We evaluated the effect of varying both shoot and root traits on crop N uptake across a range of nitrogen levels. Root architectural traits were found to play a more important role in root N uptake than physiological traits. Phyllochron determined the structure of the shoot through changes in source: sink ratio over time which, in interaction with light and temperature, resulted in a significant effect on PE and N uptake. Photosynthesis traits were more relevant to biomass accumulation rather than yield, especially under high nitrogen conditions. The traits identified in this study are potential targets in maize breeding for improved crop N uptake and use.

Environmental impacts and nitrogen-carbon-energy nexus of vegetable production in subtropical plateau lake basins

Vegetables are important economic crops globally, and their production has approximately doubled over the past 20 years. Globally, vegetables account for 13% of the harvested area but consume 25% of the fertilizer, leading to serious environmental impacts. However, the quantitative evaluation of vegetable production systems in subtropical plateau lake basins and the establishment of optimal management practices to further reduce environmental risks are still lacking. Using the life cycle assessment method, this study quantified the global warming, eutrophication, acidification, and energy depletion potential of vegetable production in a subtropical plateau lake basin in China based on data from 183 farmer surveys. Our results indicated that vegetable production in the study area, the Erhai Lake Basin, was high but came at a high environmental cost, mainly due to low fertilizer efficiency and high nutrient loss. Root vegetables have relatively high environmental costs due to the significant environmental impacts of fertilizer production, transportation, and application. A comprehensive analysis showed that the vegetable production in this region exhibited low economic and net ecosystem economic benefits, with ranges of 7.88–8.91 × 103 and 7.35–8.69 × 103 $ ha−1, respectively. Scenario analysis showed that adopting strategies that comprehensively consider soil, crop, and nutrient conditions for vegetable production can reduce environmental costs (with reductions in global warming potential (GWP), eutrophication potential (EP), acidification potential (AP), and energy depletion potential (EDP) by 10.6–28.2%, 65.1–73.5%, 64.5–71.9%, 47.8–70.4%, respectively) compared with the current practices of farmers. This study highlighted the importance of optimizing nutrient management in vegetable production based on farmers’ practices, which can achieve more yield with less environmental impacts and thereby avoid the “trade-off” effect between productivity and environmental sustainability.

Single Nucleotide Polymorphisms and Insertion/Deletion Variation Analysis of Octoploid and Decaploid Tropical Oil Tea Camellia Populations Based on Whole-Genome Resequencing

Oil tea camellia (Camellia spp.) is an important woody oil crop with a high nutritional and economic value. Whole-genome resequencing (WGR) technology can provide an in-depth understanding of the genetic background of this plant as well as a reference for breeding research, germplasm resource conservation, and genetic modification. In this study, we analyzed SNP and InDel variations in 49 individual oil tea camellia germplasm samples collected from five populations located in three provinces of China: Hainan, Guangdong and Guangxi. The samples were analyzed through WGR after the ploidy of the samples was determined through flow cytometry. A total of 239,441,603 high-quality single nucleotide polymorphisms (SNPs) and 23,510,374 high-quality insertion/deletion variation sites (InDels) were obtained. The distribution of SNPs and InDels in different functional regions differed significantly, with a high density of variations in non-coding regions, such as intergenic regions and introns, and a relatively low density of variations in coding regions. Transition was the main type of SNP variation. A population genetic diversity analysis revealed that the sampled oil tea camellia populations exhibited a high genetic diversity and extensive genetic variation. The genetic diversity of the oil tea camellia populations in the Hainan region was higher than inland regions. This study also determined the genetic diversity of and variations between octoploid and decaploid oil tea camellia in the tropics and between Hainan-based and inland oil tea camellia. Such findings provide a reference for the conservation of germplasm resources and the genetic modification of oil tea camellia.

Identification of Candidate Genes for Soybean Storability via GWAS and WGCNA Approaches

Soybean (Glycine max (L.) Merr.) is an important crop for both food and feed, playing a significant role in agricultural production and the human diet. During long-term storage, soybean seeds often exhibit reduced quality, decreased germination, and lower seedling vigor, ultimately leading to significant yield reductions in soybean crops. Seed storage tolerance is a complex quantitative trait controlled by multiple genes and is also influenced by environmental factors during seed formation, harvest, and storage. This study aimed to evaluate soybean germplasms for their storage tolerance, identify quantitative trait nucleotides (QTNs) associated with seed storage tolerance traits, and screen for candidate genes. The storage tolerance of 168 soybean germplasms was evaluated, and 23,156 high-quality single nucleotide polymorphism (SNP) markers were screened and analyzed through a genome-wide association study (GWAS). Ultimately, 14 QTNs were identified as being associated with seed storage tolerance and were distributed across the eight chromosomes of soybean, with five QTNs (rs25887810, rs27941858, rs33981296, rs44713950, and rs18610980) being newly reported loci in this study. In the linkage disequilibrium regions of these SNPs, 256 genes were identified. By combining GWAS and weighted gene co-expression network analysis (WGCNA), eight hub genes (Glyma.03G058300, Glyma.04G1921100, Glyma.04G192600, Glyma.04G192900, Glyma.07G002000, Glyma.08G329400, Glyma.16G074600, Glyma.16G091400) were jointly identified. Through the analysis of expression patterns, two candidate genes (Glyma.03G058300, Glyma.16G074600) potentially involved in seed storage tolerance were ultimately identified. Additionally, haplotype analysis revealed that natural variations in Glyma.03G058300 could affect seed storage tolerance. The findings of this research provide a theoretical foundation for understanding the regulatory mechanism underlying soybean storage.

Assessment of Genetic Diversity and Population Structure of Exotic Sugar Beet (Beta vulgaris L.) Varieties Using Three Molecular Markers

Sugar beet (Beta vulgaris L.) is a biennial herb belonging to the Amaranthaceae family. It contributes to approximately 30% of the world’s total sucrose production and is an economically important crop. In this study, we analyzed the genetic diversity and population structure of 132 exotic sugar beet varieties using three molecular makers: four pairs of simple sequence repeat (SSR) primers, three pairs of insertion–deletion sequence (InDel) primers, and 20 cis-element amplification polymorphism (CEAP) primers. The results indicated that the number of alleles (Na) was 298, among which the number of effective alleles (Ne) was 182.426 (accounting for approximately 61.2%). The mean value of the genetic diversity index was 0.836. The polymorphic information content (PIC) was 0.639–0.907 (mean = 0.819), indicating a high level of polymorphism. These sugar beet varieties were classified into six clusters using the UPGMA method of cluster analysis. Population structure analysis revealed that the most ideal K value was 6. This indicated that the test materials could be divided into six categories, consistent with the clustering results. The clustering results indicated that most sugar beet varieties from the same breeding company clustered together, and the genetic distance between them was small, indicating that they may share the same male and/or female parent. Some varieties from different companies clustered together, indicating a narrow genetic base and potential exchange of germplasm resources between breeding companies. This study revealed the genetic differences among exotic sugar beet varieties and characteristics of the population structure. It provided a scientific basis for the identification of sugar beet varieties and markers-assisted breeding in China in the future.

Dynamic Analysis of Fermentation Quality, Microbial Community, and Metabolome in the Whole Plant Soybean Silage

Soybean (Glycine max (L.) Merr.) is an important oilseed crop, known for its rich nutritional content and high-quality protein. To address the shortage of feed protein resources and better utilize soybeans as a raw material, this study investigated the feasibility of using whole-plant soybean (WPS) as silage. As the ensiling period is a critical fermentation parameter, identifying the optimal fermentation duration was a key objective. The research involves fermenting WPS for silage production, conducted over five fermentation durations: 7, 15, 30, 60, and 90 days. The fermentation quality, microbial community, and metabolome of WPS silage were analyzed across these different time points. WPS silage fermented for 30 days exhibited optimal fermentation characteristics, with the highest lactic acid (LA) content observed at 30 days (p < 0.05), while butyric acid (BA) was detected only at 60 and 90 days. At 30 days, Enterococcus genera reached its peak relative abundance and was identified as the dominant genus. Random forest analysis highlighted Pantoea genera as the most influential biomarker. Metabolomic analysis revealed that the metabolic pathways involved in the biosynthesis of essential amino acids valine, leucine, and isoleucine were significantly enhanced during the later stages of fermentation compared to the earlier stages. Under natural fermentation conditions, the optimal fermentation period for WPS silage is approximately 30 days. These findings provide a theoretical basis for the utilization of WPS and the subsequent optimization of fermentation quality.

Studying the biochemical composition of peanut accessions from the VIR collection

Background. Peanut is one of the most important oil crops for food purposes. Natural peanut butter contains two unsaturated fatty acids, oleic and linoleic, which make up to 80% of the total fatty acid content in peanut oil. The quality of oil depends on the ratio between these two acids. Analyzing the diversity of oil content and fatty acid composition in peanut accessions preserved at VIR and assessing the effect of soil, climate, and other factors on these characters is vital for the development of new peanut cultivars rich in oil. Materials and methods. Peanut germplasm accessions were studied for their biochemical composition of fatty acids and the content of oil and protein. The accessions were reproduced for three years (2019–2021) at two ecogeographic locations: in Krasnodar Territory, and Astrakhan Province. Cv. ‘Otradokubansky’ was used as a reference. ANOVA was applied for statistical data processing. Results and discussion. The percentage composition of 18 fatty acids was calculated in peanut oil, with oleic and linoleic acids dominating. The content of oleic acid depended on the genotype for 42–53%, and that of linoleic acid, for 50–71%. The latter was also influenced by the place and year of cultivation. The ranges of variation over the three years of studies in Krasnodar Territory were 35.4–57.6% for oleic acid, and 18.3–38.1% for linoleic acid, whereas in Astrakhan Province they were 33.4–51.2%, and 30.9–42.7%, respectively. Under unfavorable conditions, the content of oleic acid in peanut prevailed. The oil content depended on the genotype for 81%, and its percentage was 32.0–44.4%.

Evaluation of Kabuli Chickpea Genotypes for Tropical Adaptation in Northern Australia

Chickpea is one of the economically important legume crops adapted for winter season production in tropical climates. This study evaluated the physiological, morphological, and biochemical traits of eight Kabuli chickpea genotypes in an Australian tropical environment. The result revealed significant differences between genotypes for seed emergence, plant height, primary shoots, leaf number, leaf area index, gas-exchange parameters, seed yield, carbon discrimination (Δ13C), and natural abundance for nitrogen fixation. Among the tested genotypes, AVTCPK#6 and AVTCPK#19 exhibited late flowering (60–66 days) and late maturity (105–107 days), and had higher leaf photosynthetic rate (Asat) (28.4–31.2 µmol m−2 s−1), lower stomatal conductance (gsw) (516–756 mmol m−2 s−1), were associated with reduced transpiration rate (T) (12.3–14.5 mmol m−2 s−1), offered greater intrinsic water-use efficiency (iWUE) (2.1–2.3 µmol m−2 s−1/mmol m−2 s−1), and contributed a higher seed yield (626–746 g/m2) compared to other genotypes. However, a larger seed test weight (>60 g/100 seed) was observed for AVTCPK#24, AVTCPK#8, and AVTCPK#3. Similarly, a high proportion (45%) of larger seeds (>10–11 mm) was recorded for AVTCPK#24. Furthermore, a higher %Ndfa in AVTCPK#6 (71%) followed by AVTCPK#19 (63%) indicated greater symbiotic nitrogen fixation in high-yielding genotypes. Positive correlation was observed between %Ndfa and seed protein, as well as between seed yield and plant height, primary shoots, leaf count, leaf area index, leaf photosynthesis, stomatal conductance, transpiration rate at pod filling stage, biomass, and harvest index. An inverse correlation between (Δ13C) and iWUE, particularly in AVTCPK#6 and AVTCPK#19, indicates greater heat and drought tolerance, required for high-yielding Kabuli chickpea production in northern Australia.

Early Generation Selection of Potato Breeding Lines

Potato is the third most important food crop in the world in terms of adaptability, yield potential, and nutritional advantages. This study aimed to conduct potato breeding work for cultivation in Kazakhstan; potato breeding for further processing into chips with cultivation in the northern regions; and the selection of potatoes for processing into frozen French fries with cultivation in the southern and south-eastern regions. Potato varieties (Fontane, Santana, and Punchy) were used as reference varieties to check molecular markers linked to maturity, tuber shape, and flesh color. A total of 42 potato breeding lines crossed from Yagodnyi 19 and CIP clone 397079-6 were used in this study to identify prospective breeding lines. The research was carried out between 2023 and 2024 and under greenhouse conditions. According to the results of molecular analysis and phenotypic data, 21 breeding lines were identified as prospective potato breeding lines. The majority of these potato breeding lines had a round tuber shape and were recommended for chip processing. Three breeding lines had a long oval tuber shape, making them suitable for French fries. Six breeding lines with short-oval and oval tuber shapes were found for consumer potato processing. It is recommended that the breeding process and studies of biochemical properties are continued in all of these identified potato breeding lines.

Effect of Media on Lablab (Lablab purpureus var. typicus) for Yield and Quality under Soilless Vertical Farming System

Background: Lablab (Lablab purpureus var. typicus) is one of the important leguminous vegetable crops known for its highest content of protein. The area under cultivation is shrinking due to conversion of farm land into non-agricultural purposes. Under these circumstances, soilless vertical farming system is the only alternate cultivation system for increasing production of vegetables. Media play a major role in growth and yield of vegetables under soilless conditions. With this background, the present experiment was carried out to study the effect of growing media in lablab for high yield and quality under soilless vertical farming systems. Methods: Two lablab varieties viz., CO 5 (V1) and Arka Prasidhi (V2) were raised under five different media combinations viz., 100% cocopeat (M1), 50 % cocopeat + 50 % Vermicompost (M2), 50% cocopeat + 50 % FYM (M3), 50% cocopeat + 25% vermicompost + 25% FYM (M4) and Control (M5) with three replications during 2021-2022 and 2022-2023. This experiment was laid out in FCRD. The growth and yield parameters were recorded and the data was subjected to statistical analysis. Result: The experimental results revealed that both the varieties and growing media provided significant impact on growth, yield, quality and uptake of nutrients whereas dry matter content exhibited no significant impact among the different media. The pooled season data revealed that variety CO 5 observed for the overall superior performance while the media combination of 50% cocopeat + 50% Vermicompost considered superior for growth and yield characters where 50% cocopeat + 25% vermicompost + 25% FYM showed superiority for the quality parameters and uptake of nutrients.

Major Insect Pests of Sweet Potatoes in Brazil and the United States, with Information on Crop Production and Regulatory Pest Management.

The sweet potato [Ipomoea batatas (L.) Lam] is considered one of the most important crops in the world as food, fodder, and raw material for starch and alcohol production. Sweet potato consumption and demand for its value-added products have increased significantly over the past two decades, leading to new cultivars, expansion in acreage, and increased demand in the United States and its export markets. Due to its health benefits, sweet potato production has multiplied over the past decade in Brazil, promoting food security and economic development in rural areas. Their adaptability and nutritional value make them a food of great importance for Brazil. As pest attacks and disease infection are the main limiting aspects that often cause yield loss and quality degradation in sweet potatoes, there is a great demand to develop effective defense strategies to maintain productivity. There is a critical need for research into non-pesticide control approaches that can provide safe, cost-effective, sustainable, and environmentally friendly pest and disease management techniques. Pests which feed on roots have trade implications worldwide. For example, sweet potato tuber shipments infested with the sweet potato weevil are generally not allowed for trade in North and South America.

Fine mapping and identification of the downy mildew resistance gene BoDMR2 in Cabbage (Brassica oleracea L. var. capitata).

Cabbage (Brassica oleracea L. var. capitata) is an important crop within the Brassica oleracea species and is extensively cultivated worldwide. In recent years, outbreaks of downy mildew caused by Hyaloperonospora parasitica have resulted in substantial losses in cabbage production. Despite this, there have been limited studies on genes associated with resistance to downy mildew in cabbage. This study identified sister lines exhibiting significant differences in disease resistance and susceptibility. Using bulked segregant analysis followed by sequencing (BSA-seq) and linkage analysis, the cabbage resistance locus BoDMR2 was accurately mapped to an approximately 300kb interval on chromosome 7. Among the candidate genes identified, several single nucleotide polymorphisms (SNPs) and a 3-bp insertion were found within the conserved domain of the Bo7g117810 gene, encoding a leucine-rich repeat domain protein, in susceptible genotypes. Additionally, real-time quantitative polymerase chain reaction (RT‒qPCR) analysis revealed that the expression level of Bo7g117810 in resistant specimens was 2.5-fold higher than that in susceptible specimens. An insertion‒deletion (InDel) marker was designed based on the identified insertion in susceptible materials, facilitating the identification and selection of downy mildew-resistant cabbage cultivars. This study identifies Bo7g117810 as a potential candidate gene associated with adult-stage resistance to downy mildew in cabbage, supported by observed differences in gene sequence and expression levels. Furthermore, the development of an InDel marker I1-3, based on its mutation, provides valuable resources for breeding resistant cabbage cultivars.