Some studies have shown that coils placed perpendicular to conductors have excellent detection effect for specific defects in eddy-current testing (ECT), where the impedance is an important parameter. The impedance calculation for perpendicular coil is more complex than that for parallel coil, and currently the main focus is on the impedance analysis of circular and rectangular coils. In this paper, a closed formula for the impedance of a coil with arbitrary-shape perpendicular to the conductor is given based on the second order vector position method. In the proposed model, a novel shape and position function is defined to extend the coil application to arbitrary cross-sectional shapes. Meanwhile, experimental comparisons are conducted to evaluate the impedance of various coils on an aluminum plate. The results illustrated that the experimental values are in perfect agreement with the calculated ones. Therefore, the proposed model can provide guidance for the impedance calculation of arbitrarily-shaped coils in eddy current testing.