Purpose:BMPRIA is a serine-threonine kinase, TGF? superfamily type I receptor involved in protein signaling. Germline BMPRIA mutations, in addition to germline SMAD4 and PTEN mutations, have been described in kindreds with Juvenile Polyposis Syndrome (JPS), a syndrome with elevated risk for colorectal cancer. COX-2, an enzyme overexpressed in neoplastic colonic tissue, can activate Epidermal Growth Factor Receptor mitogenic activity. BMP ligands, which may be overexpressed in cells with mutant BMPRIA, negatively regulate EGF responsiveness. We characterized a JPS kindred for BMPRIA mutations, and examined the polyps for BMPRIA expression and COX2 expression. Methods: DNA analysis for BMPRIA was performed on a 21-year old male diagnosed with JPS who had a family history for JPS. Polypectomies were performed. Adenomatous change was present in several polyps. Genomic DNA was extracted from polyp material and microsatellite and LOH analyses were performed. Immunohistochemistry was performed using specific antibodies for BMPRIA and COX2. Hamartomatous polyps from patients without germline mutations in BMPRIA were used for controls. Results: The kindred possessed a germline BMPRIA missense mutation. In polyp domains containing adenomatous change, microsatellite analysis revealed novel frameshift mutations, but no LOH was observed using markers near the BMPRIA locus. Immunostaining revealed light staining for BMPRIA from the adenomatous epithelial components of the polyps, indicative of decreased expression of BMPRIA. COX2 immunostaining did not reveal overexpression in the cystic epithelium or lamiNaPropria. Conclusions: Polyps from a JPS patient with germline BMPRIA mutation showed decreased expression of BMPRIA in adenomatous epithelium, which overlapped with areas demonstrating microsatellite instability. This form of genomic instability may represent a mechanism for adenomatous change. COX2 was not overexpressed in polyps or adenomatous tissue from the BMPRIA heterozygote, suggesting an alternative mechanism for pathogenesis in these hamartomatous polyps compared with Peutz Jeghers polyps. This may imply that COX2 inhibitors would not be an effective means for chemoprevention in these polyps.