Introduction Clinically, limb immobilization has been extensively used during recovery of musculoskeletal injuries despite the fact that this technique causes functional deficits in the skeletal muscle. Aim of the study This work aimed to study the morphology of ipsilateral soleus muscle after left hindlimb immobilization in the shortened position in adult male albino rats. Materials and methods Ten healthy adult male albino rats were divided equally into two groups: a control group and an immobilized group. Immobilized animals were anesthetized and their left hindlimbs were fixed for 2 weeks keeping the soleus muscle in the shortened position. Animals of the control group were anesthetized without carrying out any procedures for soleus muscle fixation and then were kept freely moving in their cages for the same period. Left soleus muscles of all animals were dissected out and processed for examination by light and electron microscopy. Immunoreaction experiments for desmin were carried out. Results The left soleus muscles of immobilized rats showed that most of the muscle fibers were shrunken with widened endomysium, deeply stained nuclei, and lighter-stained foci. The affected myocytes contained distorted Z-lines, thinning or focally destroyed myofibrils, loss of myofilaments, and undulating sarcolemmae. Sarcosomes were bizarre shaped, amorphous, and giant. Desmin immunoreactivity appeared weak. Conclusion Immobilization led to muscle fiber structural alterations in the form of thinning or focally destroyed myofibrils, loss of myofilaments, Z-line distortion, and disorganized desmin distribution. These changes can produce muscle fiber weakness, which consequently affects motor performance.