As tailorable solvents, the physiochemical properties of ionic liquids can be tuned by the structure of ions. Herein, we investigate the structural effects of ILs on the self-assembly of surfactants. It has been confirmed that the cationic surfactant 1-hexadecyl-3-methylimidazolium bromide (C16mimBr) can self-assemble into micellar and lamellar lyotropic liquid crystal phases in the aprotic ionic liquid (AIL) 1-ethyl-3-methylimidazolium tetrafluoroborate ([Emim]BF4). In this work, we explore the aggregation behaviours in AILs with different alkyl chains on the imidazolium group, i.e., 1-propyl-3-methylimidazolium tetrafluoroborate ([Pmim]BF4), 1-butyl-3-methylimidazolium tetrafluoroborate ([Bmim]BF4), 1-hexyl-3-methylimidazolium tetrafluoroborate ([Hmim]BF4) and 1-octyl-3-methylimidazolium tetrafluoroborate ([Omim]BF4). With the increase of the cation chain length, AILs have better solubility of the solvophobic part of the surfactants and hence a weaker driving force for self-assembly. Therefore, the critical micellization concentration of C16mimBr in AILs increases as confirmed by the surface tension and small angle X-ray scattering characterizations. More interesting things happen to the phase behaviours. Besides the micellar and lamellar lyotropic liquid crystal phases, a hexagonal lyotropic liquid crystal phase is formed in [Pmim]BF4 while hexagonal and bicontinuous cubic lyotropic liquid crystal phases are formed in [Bmim]BF4, [Hmim]BF4 and [Omim]BF4. It is surprising to observe richer phase behaviours in solvents of lower cohesive energy. The detailed structural information of various aggregates has been obtained by small-angle X-ray scattering. It is demonstrated that AILs work as not only solvents but also co-surfactants.