Flow measurement in rivers and channels is crucial for water resource management and infrastructure planning, especially under the context of climate change. However, traditional methods like mechanical current meters and hydroacoustic instruments face limitations in terms of cost, intrusiveness, and accessibility. In recent years, image-based velocimetry techniques have emerged as promising alternatives due to their non-contact nature and cost-effectiveness. Nevertheless, persistent challenges remain, particularly concerning the uniform distribution of surface tracers necessary for precise measurements. These challenges are particularly pronounced in cases involving artificial seeding, where ensuring uniform distribution poses a significant obstacle. To address this issue, this study presents a novel methodology for filtering Large Scale Particle Image Velocimetry (LSPIV) data based on indicators of pixel intensity gradients. The methodology was evaluated across various field measurements under low flow conditions, encompassing a wide range of seeding characteristics. The evaluations demonstrated improvements in mean surface velocity profile estimation, showing reductions of up to 70 % in normalized root mean square error compared to not using filters. Additionally, the results were compared with filters typically employed by experienced LSPIV users, such as background subtraction and cross-correlation coefficient thresholds, showing improvements with the proposed filter. Implementation of the proposed strategy reduces the subjectivity in LSPIV implementation, particularly for users with limited knowledge of the technique, but also require minimal post-processing efforts. The methodology is anticipated to be integrated into existing software tools, thereby enhancing the accessibility of LSPIV for individuals with limited expertise in image velocimetry. Overall, this methodology facilitates cost-effective expansion of hydrological information availability, particularly in resource-constrained regions.