Image-based Estimations Research Articles

Assessing the Optimal Stage-Cam Target for Continuous Water Level Monitoring in Ephemeral Streams: Experimental Evidence

Recently, increased attention has been devoted to intermittent and ephemeral streams (IRES) due to the recognition of their importance for ecology, hydrology, and biogeochemistry. However, IRES dynamics still demand further research, and traditional monitoring approaches present several limitations in continuously and accurately capturing river network expansion/contraction. Optical-based approaches have shown promise in noninvasively estimating the water level in intermittent streams: a simple setup made up of a wildlife camera and a reference white pole led to estimations within 2cm of accuracy in severe hydrometeorological conditions. In this work, we investigate whether the shortcomings imposed by adverse illumination can be partially mitigated by modifying this simple stage-cam setup. Namely, we estimate the image-based water level by using both the pole and a larger white bar. Further, we compare such results to those obtained with larger bars painted in the red, green, and blue primary colors. Our findings show that using larger white bars also increases reflections and, therefore, the accuracy in the estimation of the water level is not necessarily enhanced. Likewise, experimenting with colored bars does not significantly improve image-based estimations of the stage. Therefore, this work confirms that a simple stage-cam setup may be sufficient to monitor IRES dynamics, suggesting that future efforts may be rather focused on including filters and polarizers in the camera as well as on improving the performance of the image processing algorithm.

Clinical decision-support for acute burn referral and triage at specialized centres – Contribution from routine and digital health tools

ABSTRACT Background Specialized care is crucial for severe burn injuries whereas minor burns should be handled at point-of-care. Misdiagnosis is common which leads to overburdening the system and to a lack of treatment for others due to resources shortage. Objectives The overarching aim was to evaluate four decision-support tools for diagnosis, referral, and triage of acute burns injuries in South Africa and Sweden: referral criteria, mortality prediction scores, image-based remote consultation and automated diagnosis. Methods Study I retrospectively assessed adherence to referral criteria of 1165 patients admitted to the paediatric burns centre of the Western Cape of South Africa. Study II assessed mortality prediction of 372 patients admitted to the adults burns centre by evaluating an existing score (ABSI), and by using logistic regression. In study III, an online survey was used to assess the diagnostic accuracy of burn experts’ image-based estimations using their smartphone or tablet. In study IV, two deep-learning algorithms were developed using 1105 acute burn images in order to identify the burn, and to classify burn depth. Results Adherence to referral criteria was of 93.4%, and the age and severity criteria were associated with patient care. In adults, the ABSI score was a good predictor of mortality which affected a fifth of the patients and which was associated with gender, burn size and referral status. Experts were able to diagnose burn size, and burn depth using handheld devices. Finally, both a wound identifier and a depth classifier algorithm could be developed with relatively high accuracy. Conclusions Altogether the findings inform on the use of four tools along the care trajectory of patients with acute burns by assisting with the diagnosis, referral and triage from point-of-care to burns centres. This will assist with reducing inequities by improving access to the most appropriate care for patients.

Wheat grain width: a clue for re-exploring visual indicators of grain weight

BackgroundMean grain weight (MGW) is among the most frequently measured parameters in wheat breeding and physiology. Although in the recent decades, various wheat grain analyses (e.g. counting, and determining the size, color, or shape features) have been facilitated, thanks to the automated image processing systems, MGW estimations have been limited to using few number of image-derived indices; i.e. mainly the linear or power models developed based on the projected area (Area). Following a preliminary observation which indicated the potential of grain width in improving the predictions, the present study was conducted to explore more efficient indices for increasing the precision of image-based MGW estimations. For this purpose, an image archive of the grains was processed, which were harvested from a 2-year field experiment carried out with 3 replicates under two irrigation conditions and included 15 cultivar mixture treatments (so the archive was consisted of 180 images including more than 72,000 grains).ResultsIt was observed that among the more than 30 evaluated indices of grain size and shape, indicators of grain width (i.e. Minor & MinFeret) along with 8 other empirical indices had a higher correlation with MGW, compared with Area. The most precise MGW predictions were obtained using the Area × Circularity, Perimeter × Circularity, and Area/Perimeter indices. Furthermore, it was found that (i) grain width and the Area/Perimeter ratio were the common factors in the structure of the superior predictive indices; and (ii) the superior indices had the highest correlation with grain width, rather than with their mathematical components. Moreover, comparative efficiency of the superior indices almost remained stable across the 4 environmental conditions. Eventually, using the selected indices, ten simple linear models were developed and validated for MGW prediction, which indicated a relatively higher precision than the current Area-based models. The considerable effect of enhancing image resolution on the precision of the models has been also evidenced.ConclusionsIt is expected that the findings of the present study, along with the simple predictive linear models developed and validated using new image-derived indices, could improve the precision of the image-based MGW estimations, and consequently facilitate wheat breeding and physiological assessments.

Estimating damage size and remaining useful life in degraded structures using deep learning-based multi-source data fusion

In this article, a new deep learning-based approach for online estimation of damage size and remaining useful life of structures is presented. The proposed approach consists of three modules. In the first module, a long short-term memory regression model is used to construct a sensor-based estimation of the damage size where different ranges of temporal correlations are considered for their effects on the accuracy of the damage size estimations. In the second module, a convolutional neural network semantic image segmentation approach is used to construct automated damage size estimations in which a pixel-wise classification is carried out on images of the damaged areas. Using physics-of-failure relations, frequency mismatches associated with sensor- and image-based size estimations are resolved. Finally, in the third module, damage size estimations obtained by the first two modules are fused together for an online remaining useful life estimation of the structure. Performance of the proposed approach is evaluated using sensor and image data obtained from a set of fatigue crack experiments performed on aluminum alloy 7075-T6 specimens. It is shown that using acoustic emission signals obtained from sensors and microscopic images in these experiments, the damage size estimations obtained from the proposed data fusion approach have higher accuracy than the sensor-based and higher frequency than the image-based estimations. Moreover, the accuracy of the data fusion estimations is found to be more than that of image-based estimations for the experiment with the largest sensor dataset. Based on the results obtained, it is concluded that the consideration of longer temporal correlations can lead to improvements in the accuracy of crack size estimations and, thus, a better remaining useful life estimation for structures.

In vivo gadolinium nanoparticle quantification with SPECT/CT

BackgroundGadolinium nanoparticles (Gd-NP) combined with radiotherapy are investigated for radiation dose enhancement in radiotherapy treatment. Indeed, NPs concentrated in a tumor could enhance its radiosensitization. The noninvasive quantification of the NP concentration is a crucial task for radiotherapy treatment planning and post-treatment monitoring as it will determine the absorbed dose. In this work, we evaluate the achievable accuracy of in vivo SPECT-based Gd-NP organ concentration on rats.MethodsGd-NPs were labeled with 111In radionuclide. SPECT images have been acquired on phantom and rats, with various Gd-NP injections. Images have been calibrated and corrected for attenuation, scatter, and partial volume effect. Image-based estimations were compared to both inductively coupled plasma mass spectrometer (ICP-MS) for Gd concentration and ex vivo organ activity measured by gamma counter.ResultsThe accuracy for the Gd mass measurements in organ was within 10% for activity above 2 MBq or concentrations above ∼ 3–4 MBq/mL. The Gd mass calculation is based on In-Gd coefficient which defines the Gd detection limit. It was found to be in a range from 2 mg/MBq to 2 µg/MBq depending on the proportions of initial injection preparations. Measurement was also impaired by free Gd and 111In formed during metabolic processes.ConclusionsEven if SPECT image quantification remains challenging mostly due to partial volume effect, this study shows that it has potential for the Gd mass measurements in organ. The main limitation of the method is its indirectness, and a special care should be taken if the organ of interest could be influenced by different clearance rate of free Gd and 111In formed by metabolic processes. We also discuss the practical aspects, potential, and limitations of Gd-NP in vivo image quantification with a SPECT.

High-Throughput Biomass Estimation in Rice Crops Using UAV Multispectral Imagery

This paper presents a high-throughput method for Above Ground Estimation of Biomass (AGBE) in rice using multispectral near-infrared (NIR) imagery captured at different scales of the crop. By developing an integrated aerial crop monitoring solution using an Unmanned Aerial Vehicle (UAV), our approach calculates 7 vegetation indices that are combined in the form of multivariable regressions depending on the stage of rice growth: vegetative, reproductive or ripening. We model the relationship of these vegetation indices to estimate the biomass of a certain crop area. The methods are calibrated by using a minimum sampling area of 1 linear meter of the crop. Comprehensive experimental tests have been carried out over two different rice varieties under upland and lowland rice production systems. Results show that the proposed approach is able to estimate the biomass of large areas of the crop with an average correlation of 0.76 compared with the traditional manual destructive method. To our knowledge, this is the first work that uses a small sampling area of 1 linear meter to calibrate and validate NIR image-based estimations of biomass in rice crops.

Quality Control Assessment of the Mission Airborne Carbon 13 (MAC-13) Hyperspectral Imagery from Costa Rica

. A data quality assessment of airborne hyperspectral imagery (HSI) from Mission Airborne Carbon 2013 (MAC13) is presented. Because data quality is fundamentally important for modeling landscape biophysical characteristics from HSI, this article presents an assessment related to spectral alignment, spectroradiometric calibration, and geocorrection for 2,700 km2 of imagery acquired with the CASI-1500 and SASI-644 systems (375 nm – 2523 nm, 2.5 m resampled pixel size). MODIS, in-situ and image-based estimations of aerosol optical depth are compared for calculations of visibility for atmospheric correction. Information content (dimensionality) across the 5 ecosystems and 2 developed areas are also compared to illustrate the benefit of the extensive spectral resolution of the data.New approaches to the offset corrections of the imagery improved the accuracy of the calibrated results (radiance and reflectance). Assessment of visibility values applied to the atmospheric correction adduced that apparent reflectance computed using in-scene modeled visibility produced the most similar results to ground spectra. Dimensionality analysis revealed increased information content for all ecosystems when both sensors were considered. While not every HSI issue can be completely compensated for, an appreciation of common artifacts allows users to make more informed decision about their impact on planned analysis.

Quantification of the contribution of the Beauce groundwater aquifer to the discharge of the Loire River using thermal infrared satellite imaging

Abstract. Seven Landsat thermal infrared (TIR) images taken over the period 2000–2010 were used to establish longitudinal temperature profiles of the middle Loire River where it flows above the Beauce aquifer. The groundwater discharge along the river course was quantified for each identified groundwater catchment area using a heat budget based on temperature variations of the Loire River estimated from the TIR images. The results showed that 75 % of the temperature differences, between in situ observations and TIR image-based estimations, remained within the ±1 °C interval. The main discharge area of the Beauce aquifer into the Loire River was located between river kilometers 630 and 650, where there was a temperature drop of 1–1.5 °C in the summer and a rise of 0.5 °C in winter. According to the heat budgets, groundwater discharge was higher during the winter period (13.5 m3 s−1) than during the summer period (5.3 m3 s−1). These findings are in line with the results of both a groundwater budget and a process-based distributed hydrogeological model. Groundwater input was also found to be higher during the Loire's flow recession periods.