Abstract Background Patient-derived inflammatory bowel disease (IBD) ex-plants have potential for biomarker and therapy discovery. Infliximab (IFX), ustekinumab (UST) and vedolizumab (VDZ) are biologic therapies licenced for the induction and maintenance of remission in ulcerative colitis (UC) and Crohn’s disease (CD). All have demonstrated efficacy in IBD despite differing mechanisms of action. IBD explants have the potential to be used as a precision medicine tool, to gain further insights into disease biology and therapeutic mechanisms of action. We aimed to evaluate the effect of IFX, UST and VDZ on inflammatory protein secretion profiles in ex-vivo human IBD ex-plants, whilst comparing these explant secretome variations with in-vivo patient data of patients who commenced these therapies in clinic. Methods Patients with IBD due to commence in-vivo biologic therapy, undergoing endoscopy, were prospectively recruited. Endoscopic biopsies were collected from the sigmoid colon and IBD ex-plants generated as per previously described methods. IBD explants were then cultured for 24 hours with an IgG control vehicle, IFX, UST and VDZ. After 24 hours, tissue conditioned media (TCM) from IBD explants was collected. TCM secreted inflammatory protein profiles were quantified using 54 V-plex ELISA (Meso Scale Diagnostics, USA). Secreted inflammatory protein profiles were compared between IgG vehicle (control) and UST, IFX, VDZ treated ex-plants. Principal component analysis (PCA) was carried out to characterise the influence of biologics on ex-vivo explant secreted inflammatory profiles. Clinical responses of patients treated with biologics in-vivo were also compared with explants inflammatory profiles. Results 37 patients with were included (51% CD, 49% UC); age (median, [IQR]) 41[33-53] years, 49% male; disease duration (median, [IQR]) 9 [5-14] years. 23 patients were subsequently commenced on either IFX, UST or VDZ in-vivo and followed over 2 years to determine therapy response. PCA identified significant variation in the CD and UC secretome. Biologic therapy ex-vivo resulted in significant alterations and clustering in the UC secretome compared to control. Conclusion The IBD explant model recapitulates expected IBD pathology. These data demonstrate that significant differences between the CD and UC secretome. Treatment with licenced biologic therapies ex-vivo significantly alters multiple pro-inflammatory cytokines, chemokines and secreted proteins in IBD explants. Further study is required to completely understand the effects of licenced biologic therapies on the IBD tissue microenvironment.
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