Abstract Rabbits preferentially rearrange the 3’-most VH gene segment during VDJ gene rearrangement. Early in life, rabbit B cells generate a diversified primary antibody repertoire by mutating their VDJ genes in gut-associated lymphoid tissue (GALT) in response to signals acquired from intestinal commensals. To gain insight into the cell-cell and cell-microbe interactions required for VDJ gene diversification, we examined B cell surface expression levels of four chemokine receptors that mediate trafficking to important sites within GALT during repertoire diversification. We stained the chemokine receptors CXCR4, CCR6, CXCR5 and CCR7 on appendix B cells from two- through seven-day-old rabbits with fluorescence-labeled antibodies or Ig-fusion proteins of their ligands and analyzed them by flow cytometry. The changes in relative chemokine receptor expression levels we observed during the first week of life suggest that B cells, upon entering appendix follicles, first traffic to the follicle-associated epithelium, where they likely encounter commensal bacteria sampled from the intestinal microbiota. B cells subsequently migrate to, and likely receive additional signals from, the follicular dendritic cell network. Upon becoming activated, B cells then traffic to the basal region of the follicle, where they proliferate and diversify their VDJ genes to generate the primary antibody repertoire.