Managed aquifer recharge (MAR) is a promising adaptation measure to reduce vulnerability to climate change and hydrological variability. However, in areas where the basin is highly polluted, densely populated, and intensely cultivated, implementing suitable MAR strategies is a significant challenge. This study used a geographic information system-based multicriteria decision analysis (GIS-MCDA) approach to delineate the MAR potential sites using seven thematic layers describing surface and subsurface features. Further, basin-specific MAR approach was developed using information such as polluted water areas, canal network distribution for water supply, and cropping patterns. The results of this study indicate that only 17% of the area is highly suitable, while 54% and 29% were found moderately suitable and unsuitable for the MAR approach. Since most highly and moderately suitable sites were falling in the agricultural areas, agricultural-based MAR (AgMAR) was considered a preferred option. AquaCrop model for sugarcane was developed considering excess canal water supply during the grand growth stage to understand the AgMAR potential in the study area. It was observed that the potential recharge under normal irrigation scenarios varies from 135.5 to 272mm/year, which can be increased through AgMAR up to 545mm/year depending on the water availability for excess irrigations. This study provides an improved understanding of the parameters that should be considered for MAR site selection and post-GIS-MCDA analysis to assess the basin-specific MAR strategy.