Hybrid Incompatibility Research Articles

Genetic studies of two sister species in the Drosophila melanogaster subgroup, D. yakuba and D. santomea

We performed genetic analysis of hybrid sterility and of one morphological difference (sex-comb tooth number) on D. yakuba and D. santomea, the former species widespread in Africa and the latter endemic to the oceanic island of São Tomé, on which there is a hybrid zone. The sterility of hybrid males is due to at least three genes on the X chromosome and at least one on the Y, with the cytoplasm and large sections of the autosomes having no effect. F1 hybrid females carrying two X chromosomes from either species are perfectly fertile despite their genetic similarity to completely sterile F1 hybrid males. This implies that the appearance of Haldane's rule in this cross is at least partially due to the faster accumulation of genes causing male than female sterility. The larger effects of the X and Y chromosomes than of the autosomes, however, also suggest that the genes causing male sterility are recessive in hybrids. Some female sterility is also seen in interspecific crosses, but this does not occur between all strains. This is seen in pure-species females inseminated by heterospecific males (probably reflecting incompatibility between the sperm of one species and the female reproductive tract of the other) as well as in inseminated F1 and backcross females, probably reflecting genetically based incompatibilities in hybrids that affect the reproductive system. The latter 'innate' sterility appears to involve deleterious interactions between D. santomea chromosomes and D. yakuba cytoplasm. The difference in male sex-comb tooth number appears to involve fairly large effects of the X chromosome. We discuss the striking evolutionary parallels in the genetic basis of sterility, in the nature of sexual isolation, and in morphological differences between the D. santomea/D. yakuba divergence and two other speciation events in the D. melanogaster subgroup involving island colonization.

Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus.

Interspecific hybrid lethality and sterility are a consequence of divergent evolution between species and serve to maintain the discrete identities of species. The evolution of hybrid incompatibilities has been described in widely accepted models by Dobzhansky and Muller where lineage-specific functional divergence is the essential characteristic of hybrid incompatibility genes. Experimentally tractable models are required to identify and test candidate hybrid incompatibility genes. Several Drosophila melanogaster genes involved in hybrid incompatibility have been identified but none has yet been shown to have functionally diverged in accordance with the Dobzhansky-Muller model. By introducing transgenic copies of the X-linked Hybrid male rescue (Hmr) gene into D. melanogaster from its sibling species D. simulans and D. mauritiana, we demonstrate that Hmr has functionally diverged to cause F1 hybrid incompatibility between these species. Consistent with the Dobzhansky-Muller model, we find that Hmr has diverged extensively in the D. melanogaster lineage, but we also find extensive divergence in the sibling-species lineage. Together, these findings implicate over 13% of the amino acids encoded by Hmr as candidates for causing hybrid incompatibility. The exceptional level of divergence at Hmr cannot be explained by neutral processes because we use phylogenetic methods and population genetic analyses to show that the elevated amino-acid divergence in both lineages is due to positive selection in the distant past—at least one million generations ago. Our findings suggest that multiple substitutions driven by natural selection may be a general phenomenon required to generate hybrid incompatibility alleles.

A Gene Responsible for Hybrid Incompatibility in Drosophila

A Gene Responsible for Hybrid Incompatibility in Drosophila

The evolution of premating isolation: local adaptation and natural and sexual selection against hybrids.

Although reinforcement is ostensibly driven by selection against hybrids, there are often other components in empirical cases and theoretical models of reinforcement that may contribute to premating isolation. One of these components is local adaptation of a trait used in mate choice. I use several different comparisons to assess the roles that local adaptation and selection against hybrids may play in reinforcement models. Both numerical simulations of exact recursion equations and analytical weak selection approximations are employed. I find that selection against hybrids may play a small role in driving preference evolution in a reinforcement model where the mating cue is separate from loci causing hybrid incompatibilities. When females have preferences directly for purebreds of their own population, however, selection against hybrids can play a large role in premating isolation evolution. I present some situations in which this type of selection is likely to exist. This work also illustrates shortfalls of using a weak selection approach to address questions about reinforcement.

Expression of Fertility during Morphogenesis in Self-Pollinated Backcrossed Progenies of Barley–Wheat Amphiploids [Hordeum geniculatum All. (2n = 28) × Triticum aestivum L. (2n = 42)] (2n = 70)

The fertility characteristics expressed during morphogenesis in first-generation self-pollinated backcrossed progenies (BC1) obtained from amphiploid barley–wheat hybrids [Hordeum geniculatum All. (2n= 28) ×Triticum aestivum L. (2n= 42)] (2n = 70) backcrossed with common wheat were studied. It was found that, in the case of self-pollination of BC1 plants, karyotype stabilization leads to the formation of alloplasmic euploid (2n = 42), telocentric substitution (2n = 40 + 2t), and telocentric addition (2n = 42 + t), (2n = 42 + 2t) plant forms, which may serve as the sources of the respective alloplasmic lines of common wheat. That the expression of fertility characters in BC1F8plants was shown to depend on growth conditions. The main mechanism of hybrid incompatibility of BC1F1–BC1F8plants was expressed as grass-clump dwarfism.

THE EVOLUTION OF PREMATING ISOLATION: LOCAL ADAPTATION AND NATURAL AND SEXUAL SELECTION AGAINST HYBRIDS

Although reinforcement is ostensibly driven by selection against hybrids, there are often other components in empirical cases and theoretical models of reinforcement that may contribute to premating isolation. One of these components is local adaptation of a trait used in mate choice. I use several different comparisons to assess the roles that local adaptation and selection against hybrids may play in reinforcement models. Both numerical simulations of exact recursion equations and analytical weak selection approximations are employed. I find that selection against hybrids may play a small role in driving preference evolution in a reinforcement model where the mating cue is separate from loci causing hybrid incompatibilities. When females have preferences directly for purebreds of their own population, however, selection against hybrids can play a large role in premating isolation evolution. I present some situations in which this type of selection is likely to exist. This work also illustrates shortfalls of using a weak selection approach to address questions about reinforcement.

Integration of populations and differentiation of species.

The framework for modern studies of speciation was established as part of the Neo-Darwinian synthesis of the early twentieth century. Here we evaluate this framework in the light of recent empirical and theoretical studies. Evidence from experimental studies of selection, quantitative genetic studies of species' differences, and the molecular evolution of 'isolation' genes, all agree that directional selection is the primary cause of speciation, as initially proposed by Darwin. Likewise, as suggested by Dobzhansky and Mayr, gene flow does hold species together, but probably more by facilitating the spread of beneficial mutants and associated hitchhiking events than by homogenizing neutral loci. Reproductive barriers are important as well in that they preserve adaptations, but as has been stressed by botanists for close to a century, they rarely protect the entire genome from gene flow in recently diverged species. Contrary to early views, it is now clear that speciation can occur in the presence of gene flow. However, recent theory does support the long-held view that population structure and small population size may increase speciation rates, but only under special conditions and not because of the increased efficacy of drift as suggested by earlier authors. Rather, low levels of migration among small populations facilitates the rapid accumulation of beneficial mutations that indirectly cause hybrid incompatibilities.

Nasonia

What is Nasonia? A small (2–3mm) parasitoid wasp that oviposits in the pupae of flies (but not those of Drosophila!). This hymenopteran occurs naturally in bird nests and at carcasses. Three species are known: the cosmopolitan N. vitripennis and two endemic North American species, N. giraulti and N. longicornis. Nasonia is extremely easy to culture on commercially available host pupae, it has a short generation time (15 days at 25°C) and can be maintained in diapause for over one year. What is so special about Nasonia?Nasonia has haplodiploid reproduction; haploid males develop from unfertilized eggs and diploid females from fertilized eggs. Thus, all recessive traits are expressed directly in the male: this is the case for X chromosome genes in Drosophila, but with Nasonia it is true of the entire genome. An extensive forward genetic screen for developmental mutants has already been accomplished and the identification of candidate genes is under way. Unlike the honey bee and many other hymenopterans, Nasonia has no single locus complementary sex determination, which allows fully homozygous strains to be kept without inbreeding problems. Another major advantage of Nasonia is that the three species, which exhibit considerable morphological and behavioral differences, can produce viable and fertile hybrids in the laboratory. The genetic basis for these differences can thus be easily identified through QTL analysis. Nasonia is also very favorable for cell biology, with its very clear yolk and slow early development which allow easy imaging. A useful species for studying the evolution of development then? Yes. General patterns in development and evolution can only come from comparison of multiple organisms. Nasonia has a long germband mode of development, which facilitates comparison of expression patterns with Drosophila; in contrast the beetle Tribolium, also much used for studies of the evolution of development, exhibits short germband development. Transgenic and RNAi tools are also being developed for Nasonia. With respect to sex determination, it will be exciting to figure out how ploidy differences lead to determination of the two sexes. What aspects of evolutionary genetics might Nasonia illuminate?Nasonia is extensively used to study the evolution of sex ratios and speciation. Females vary the sex of their offspring by controlling whether eggs are fertilized. A number of non-Mendelian elements, including the ‘selfish’ paternal sex-ratio chromosome and cytoplasmic sex-ratio distorters illustrate genetic conflict over sex determination. Nasonia is one of the primary organisms used to investigate the evolution and mechanisms of action of Wolbachia, an intracellular bacterium which infects many arthropods. Finally, exciting work is being done, using the three cross-fertile species, on the genetic basis of hybrid incompatibilities and interspecies differences in morphology and behaviour (wingsize and courtship, for example). This takes advantage of exchange of genes or genomic regions between species and the construction of introgression lines in which a gene for a particular trait from one species is bred into another species' genetic background. Are there genomic tools available for Nasonia? Efforts are already underway to develop genetic and genomic tools for Nasonia. Visible genetic markers are known from all five chromosomes. Dense linkage maps containing RAPD, AFLP and microsatellite markers are available with a resolution of approximately 1cM, making possible whole genome screens for mutations and fine-scale mapping of genes. The total genome size is ∼335 Mb and 1cM corresponds to ∼100 Kb of genomic DNA. An embryonic cDNA library and a BAC library funded by NSF have been constructed, and the first attempts at positional cloning are underway, focusing on a major gene for wingsize. Where can I find out more?

Speciation as a positive feedback loop between postzygotic and prezygotic barriers to gene flow.

Speciation is intimately associated with the evolution of sex-and-reproduction-related traits, including those affecting hybrid incompatibility (postzygotic isolation) and species recognition (prezygotic isolation). Genes controlling such traits are not randomly distributed in the genome but are particularly abundant on the sex chromosomes. However, the evolutionary consequences of the sex linkage of genes involved in speciation have been little explored. Here, we present simulations of a continent-island diploid model that examines the effects of reduced recombination using both autosomal and sex-linked inheritance. We show first that linkage between genes affecting postzygotic and prezygotic isolation leads to a positive feedback loop in which both are strengthened. As species recognition evolves, genes causing hybrid incompatibility will hitchhike along with those improving premating isolation, leading to stronger hybrid incompatibility and thus increased pressure for further preference divergence. Second, we show that this loop effect is generally enhanced by sex linkage, because recombination is eliminated in the heterogametic sex, leading to tighter effective linkage between the two classes of genes and because natural selection is more efficient at sex-linked loci, as recessive alleles are not masked by dominance in the heterogametic sex. Accordingly, hitchhiking can be important in promoting speciation and can also lead to increased postzygotic isolation through adaptive evolution.

EXPERIMENTAL HYBRIDIZATION AS A TOOL FOR STUDYING SELECTION IN THE WILD

Selection experiments in the wild have greatly aided our understanding of how selection shapes phenotypic diversity in natural populations. However, these experiments have been hindered by the fact that the traits most important to adaptation and speciation may be fixed within populations. Experimental hybridization offers a means to circumvent this problem since crosses can be made between populations or species that differ for the trait of interest. Here, we discuss the advantages and limitations of this approach, review results from published studies, and suggest strategies for future experiments. Advantages associated with this approach include the ability to “generate” variation for traits of interest, as well as the increased sensitivity of selection assays because of the wider range of trait values characteristic of segregating hybrids. Moreover, experimental hybridization can be extended to crosses between near-isogenic lines, allowing the effects of major quantitative trait loci (QTLs) to be dissected in a well-defined genetic background. Limitations include widespread linkage disequilibrium created by hybridization, possible cosegregation of hybrid incompatibilities, and the large number of variable traits likely to affect hybrid fitnesses. Even with these limitations, this basic approach has been remarkably successful. We now know, for example, that many morphological differences between divergent populations or species are under selection and that the selection gradients may be surprisingly large. Also, small genetic changes in premating barriers may have large effects on assortative mating. With respect to discussions about the role of hybridization in evolution, experiments indicate that some hybrid trait combinations may be advantageous, particularly when the hybrid populations are placed in a new environment. Future studies seem likely to combine selection measurements with genetic mapping of the QTLs underlying the selected traits. Natural hybrid zones hold particular promise for these kinds of studies because the only experimental manipulation required is the removal of small amounts of tissue for genotyping.

Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila

Speciation--the splitting of one species into two--occurs by the evolution of any of several forms of reproductive isolation between taxa, including the intrinsic sterility and inviability of hybrids. Abundant evidence shows that these hybrid fitness problems are caused by incompatible interactions between loci: new alleles that become established in one species are sometimes functionally incompatible with alleles at interacting loci from another species. However, almost nothing is known about the genes involved in such hybrid incompatibilities or the evolutionary forces that drive their divergence. Here we identify a gene that causes epistatic inviability in hybrids between two fruitfly species, Drosophila melanogaster and D. simulans. Our population genetic analysis reveals that this gene--which encodes a nuclear pore protein--evolved by positive natural selection in both species' lineages. These results show that a lethal hybrid incompatibility has evolved as a by-product of adaptive protein evolution.

A rapidly evolving MYB-related protein causes species isolation in Drosophila.

Matings among different species of animals or plants often result in sterile or lethal hybrids. Identifying the evolutionary forces that create hybrid incompatibility alleles is fundamental to understanding the process of speciation, but very few such alleles have been identified, particularly in model organisms that are amenable to experimental manipulation. We report here the cloning of the first, to our knowledge, Drosophila melanogaster gene involved in hybrid incompatibilities, Hybrid male rescue (Hmr). Hmr causes lethality and female sterility in hybrids among D. melanogaster and its sibling species. We have found that Hmr encodes a protein with homology to a family of MYB-related DNA-binding transcriptional regulators. The HMR protein has evolved both amino acid substitutions and insertions and deletions at an extraordinarily high rate between D. melanogaster and its sibling species, including in its predicted DNA-binding domain. Our results suggest that hybrid lethality may result from disruptions in gene regulation, and we also propose that rapid evolution may be a hallmark of speciation genes in general.

Programmed cell death and hybrid incompatibility.

We propose a new theory to explain developmental aberrations in plant hybrids. In our theory, hybrid incompatibilities arise from imbalances in the mechanisms that cause male sterility in hermaphroditic plants. Mitochondria often cause male sterility by killing the tapetal tissue that nurtures pollen mother cells. Recent evidence suggests that mitochondria destroy the tapetum by triggering standard pathways of programmed cell death. Some nuclear genotypes repress mitochondrial male sterility and restore pollen fertility. Normal regulation of tapetal development therefore arises from a delicate balance between the disruptive effects of mitochondria and the defensive countermeasures of the nuclear genes. In hybrids, incompatibilities between male-sterile mitochondria and nuclear restorers may frequently upset the regulatory control of programmed cell death, causing tapetal abnormalities and male sterility. We propose that hybrid misregulation of programmed cell death may also spill over into other tissues, explaining various developmental aberrations observed in hybrids.

A fine-scale genetic analysis of hybrid incompatibilities in Drosophila.

The sterility and inviability of species hybrids is thought to evolve by the accumulation of genes that cause generally recessive, incompatible epistatic interactions between species. Most analyses of the loci involved in such hybrid incompatibilities have suffered from low genetic resolution. Here I present a fine-resolution genetic screen that allows systematic counting, mapping, and characterizing of a large number of hybrid incompatibility loci in a model genetic system. Using small autosomal deletions from D. melanogaster and a hybrid rescue mutation from D. simulans, I measured the viability of hybrid males that are simultaneously hemizygous for a small region of the D. simulans autosomal genome and hemizygous for the D. melanogaster X chromosome. These hybrid males are exposed to the full effects of any recessive-recessive epistatic incompatibilities present in these regions. A screen of approximately 70% of the D. simulans autosomal genome reveals 20 hybrid-lethal and 20 hybrid-semilethal regions that are incompatible with the D. melanogaster X. In further crosses, I confirm the epistatic nature of hybrid lethality by showing that all of the incompatibilities are rescued when the D. melanogaster X is replaced with a D. simulans X. Combined with information from previous studies, these results show that the number of recessive incompatibilities is approximately eightfold larger than the number of dominant ones. Finally, I estimate that a total of approximately 191 hybrid-lethal incompatibilities separate D. melanogaster and D. simulans, indicating extensive functional divergence between these species' genomes.

GENETIC DISSECTION OF HYBRID INCOMPATIBILITIES BETWEEN DROSOPHILA SIMULANS AND D. MAURITIANA. III. HETEROGENEOUS ACCUMULATION OF HYBRID INCOMPATIBILITIES, DEGREE OF DOMINANCE, AND IMPLICATIONS FOR HALDANE'S RULE

The genetic basis of Haldane's rule was investigated through estimating the accumulation of hybrid incompatibilities between Drosophila simulans and D. mauritiana by means of introgression. The accumulation of hybrid male sterility (HMS) is at least 10 times greater than that of hybrid female sterility (HFS) or hybrid lethality (HL). The degree of dominance for HMS and HL in a pure D. simulans background is estimated as 0.23–0.29 and 0.33–0.39, respectively; that for HL in an F1 background is unlikely to be very small. Evidence obtained here was used to test the Turelli-Orr model of Haldane's rule. Composite causes, especially, faster-male evolution and recessive hybrid incompatibilities, underlie Haldane's rule in heterogametic male taxa such as Drosophila (XY male and XX female). However, if faster-male evolution is driven by sexual selection, it contradicts Haldane's rule for sterility in heterogametic-female taxa such as Lepidoptera (ZW female and ZZ male). The hypothesis of a faster-heterogametic-sex evolution seems to fit the current data best. This hypothesis states that gametogenesis in the heterogametic sex, instead of in males per se, evolves much faster than in the homogametic sex, in part because of sex-ratio selection. This hypothesis not only explains Haldane's rule in a simple way, but also suggests that genomic conflicts play a major role in evolution and speciation.

Mutations and their use in insect control.

Traditional chemically based methods for insect control have been shown to have serious limitations, and many alternative approaches have been developed and evaluated, including those based on the use of different types of mutation. The mutagenic action of ionizing radiation was well known in the field of genetics long before it was realized by entomologists that it might be used to induce dominant lethal mutations in insects, which, when released, could sterilize wild female insects. The use of radiation to induce dominant lethal mutations in the sterile insect technique (SIT) is now a major component of many large and successful programs for pest suppression and eradication. Adult insects, and their different developmental stages, differ in their sensitivity to the induction of dominant lethal mutations, and care has to be taken to identify the appropriate dose of radiation that produces the required level of sterility without impairing the overall fitness of the released insect. Sterility can also be introduced into populations through genetic mechanisms, including translocations, hybrid incompatibility, and inherited sterility in Lepidoptera. The latter phenomenon is due to the fact that this group of insects has holokinetic chromosomes. Specific types of mutations can also be used to make improvements to the SIT, especially for the development of strains for the production of only male insects for sterilization and release. These strains utilize male translocations and a variety of selectable mutations, either conditional or visible, so that at some stage of development, the males can be separated from the females. In one major insect pest, Ceratitis capitata, these strains are used routinely in large operational programs. This review summarizes these developments, including the possible future use of transgenic technology in pest control.

Multiplicity of infection and the evolution of hybrid incompatibility in segmented viruses.

Some viral genomes are divided into segments. When multiple viruses infect a single cell, progeny form by reassorted mixtures of genomic segments. Hybrid incompatibilities arise when a progeny virus has incompatible segments from different parental viruses. Hybrid incompatibility has been observed in influenza and in the multiparticle plant virus Dianthovirus. Hybrid incompatibility provides an opportunity to study rates of viral evolution, divergence and speciation, and the extent of epistatic interactions among components of the viral genome. This paper presents mathematical and computer simulation models to study hybrid incompatibility between diverging strains. The models identify multiplicity of infection as a key factor. When many viral particles infect each host cell, the effective ploidy of the genetic system is high. High ploidy dilutes the contribution of each locus to the phenotype, weakening the selective intensity on each locus. Weaker selection on variant alleles allows the population to maintain greater genetic diversity and to be more easily perturbed by stochastic fluctuations. Greater diversity and stochastic fluctuations explore more widely the space of epistatic interactions, causing more frequent shifts among favoured combinations of alleles. Variable ploidy of viral genetics differs from standard Mendelian genetics.

Evolution of postmating isolation: comparison of three models based on possible genetic mechanisms

AbstractIn this study, we simulated the process of the evolution of postmating isolation using three models in which postmating isolation is caused by (1) genetic divergence through collaborative coevolution, (2) genetic divergence through antagonistic coevolution resulting from sexual conflict, and (3) genetic divergence through combinational incompatibility. The collaborative coevolution model and the combinational incompatibility model showed a similar decreasing pattern of hybrid compatibility over generations depending on population size and mutation rates. The antagonistic coevolution model showed that reproductive isolation can evolve rapidly depending on the intensity of selection. In the combinational incompatibility model, the increasing number of loci that interact and result in incompatibility would have both promoting and inhibiting effects on the formation of hybrid incompatibility in the earlier stage of isolation. Mutation rates for genes causing incompatibility significantly affect the number of generations required for postmating isolation, which indicates that models assuming high mutation rates (e.g., μ = 10−4) might predict much faster evolution for reproductive isolation than those observed in real populations.

THE EVOLUTION OF POSTZYGOTIC ISOLATION: ACCUMULATING DOBZHANSKY-MULLER INCOMPATIBILITIES

Hybrid sterility and inviability often result from the accumulation of substitutions that, while functional on their normal genetic backgrounds, cause a loss of fitness when brought together in hybrids. Previous theory has shown that such Dobzhansky-Muller incompatibilities should accumulate at least as fast as the square of the number of substitutions separating two species, the so-called snowball effect. Here we explicitly describe the stochastic accumulation of these incompatibilities as a function of time. The accumulation of these incompatibilities involves three levels of stochasticity: (1) the number of substitutions separating two allopatric lineages at a given time; (2) the number of incompatibilities resulting from these substitutions; and (3) the fitness effects of individual incompatibilities. Previous analyses ignored the stochasticity of molecular evolution (level 1) as well as that due to the variable effects of incompatibilities (level 3). Here we approximate the full stochastic process characterizing the accumulation of hybrid incompatibilities between pairs of loci. We derive the distribution of the number of incompatibilities as a function of divergence time between allopatric taxa as well as the distribution of waiting times to speciation by postzygotic isolation. We provide simple approximations for the mean and variance of these waiting times. These results let us estimate. albeit crudely, the probability, p, that two diverged sites from different species will contribute to hybrid sterility or inviability. Our analyses of data from Drosophila and Bombina suggest that p is generally very small, on the order of 10(-6) or less.

Genotype-by-environment interaction and the Dobzhansky–Muller model of postzygotic isolation

Abstract The Dobzhansky–Muller (D–M) model of reproductive isolation (RI) posits that hybrid sterility and inviability result from negative epistatic interactions between alleles at a minimum of two genes. This standard model makes several implicit assumptions, including a lack of environmental effects and genotype-by-environment interactions (GEI) involving hybrid sterility and hybrid inviability loci. Here we relax this assumption of the standard D–M model. By doing so, several patterns of the genetic architecture of RI change. First, a novel single-locus model of postzygotic RI emerges. Several indirect lines of evidence are discussed in support of the model, but we conclude that this new single-locus model is currently no more supported than previous ones. Second, when multilocus D–M models incorporating GEI are considered, we find that the number of potential negative epistatic interactions increases dramatically over the number predicted by the standard D–M model, even when only the most simple case of two-allele interactions are considered. Third, these multilocus models suggest that some previous generalizations about the evolutionary genetics of postzygotic RI may not necessarily hold. Our findings also suggest that the evolution of postzygotic RI may be more likely when the expression of traits driving speciation is affected by the environment, since there appears to be a greater spectrum of potential hybrid incompatibilities under the D–M model incorporating GEI.