This paper proposes a time division multiple access/time division duplex (TDMA/TDD)-based adaptive modulation system (AMS) with a convolutionally coded Type-II Hybrid automatic repeat request (ARQ) protocol to achieve high throughput data transmission in wireless communication systems. First, this paper discusses the cause of throughput limitation of the conventional fixed-rate quaternary phase shift keying (QPSK) with ARQ protocol and suggests that the effective means to improve throughput performance are the reduction of re-transmission probability under bad channel condition and the increase of transmission bit rate per TDMA/TDD slot under good channel condition. Based on these strategies, this paper discusses an AMS with a convolutionally coded type-II hybrid ARQ protocol (type-II hybrid ARQ/AMS) and evaluates its performance by computer simulation. The results confirm that the proposed type-II hybrid ARQ/AMS can drastically improve throughput performances compared to the conventional fixed-rate QPSK with selective repeat ARQ protocol (SR-ARQ/QPSK) or a simple combination of SR-ARQ and AMS (SR-ARQ/AMS) under any channel conditions, especially under severe channel conditions.