Background: Various investigators using different techniques have observed different dominant activation patterns in persistent atrial fibrillation(perAF). We developed a novel mapping technique where phase values are projected onto patient-specific 3D left atrial(LA) geometry to determine the frequency of rotors and other activation patterns. Methods: 6 minute LA AF recordings were obtained in 14 patients using the basket catheter. Exported signals underwent phase and traditional activation analysis and visualised using a novel 3D mapping system. Analysis involved:(i) validation of phase analysis by comparing beat-to-beat AF cycle length(AFCL) calculated using phase inversion with that determined from activation timing in the same 20s segment,(ii) validation of 3D phase by comparing propagation patterns observed using 3D phase with 3D activation in the same one minute segment,(iii) determining the distribution of dominant propagation patterns in 6 minute recordings using 3D phase. Results: Strong agreement of beat-to-beat AFCL between activation analysis and phase inversion(R2 = 0.91). No difference between 3D activation and phase in mean percentage of propagation patterns classified as wavefronts(p = 0.99), focal activations(p = 0.26), disorganised activity(p = 0.76). During 3D phase, propagation patterns observed were single wavefronts(50.2%), focal activations(33.4%), disorganised activity(12.4%), multiple wavefronts(1.7%) and rotors(2.3%). 34 rotors seen in 9/14 patients. All rotors were transient with mean duration of 1.0 ± 0.6s. Rotors were only observed in areas of high electrode density where inter-spline distance was shorter than non-rotor sites(7.4mm[IQR 6.3,14.6] vs. 15.3mm[IQR 10.1,22.2],p < 0.001). Conclusions: PerAF was characterised by heterogeneous activation patterns consisting of wavefronts, focal activations and transient rotational activity. Electrode density of the basket catheter may limit detection of rotors.