The stealth capability of a submarine is the key performance to be considered in submarine design since it is directly related to survivability and operational capability. In this study, a system that can be applied from the conceptual design stage for the submarine shape, including the hull forms and appendages, has been developed by considering the two key components that determine the stealth capability of underwater vessels: underwater radiated noise (URN) and target strength (TS). First, for submarine stealth design considering URN, a design optimization technique was developed that can reduce the high flow noise caused by the interaction between the propeller and the vortex generated in various parts of the hull and appendages. And for submarine stealth design considering TS, shape design technology that can minimize the reflections of active sonar was developed through an evaluation method with high adaptability to shape modifications. Finally, by developing the optimization design procedures that comprehensively cover URN and TS, the optimal shapes and arrangements of sail and rudders that can maximize stealth performance have been derived.