Root Exudates Of Host Plants Research Articles

The impact of Elaeagnus angustifolia root exudates on Parafrankia soli NRRL B-16219 exoproteome.

Root exudates from host plant species are known to play a critical role in the establishment and maintenance of symbiotic relationships with soil bacteria. In this study, we investigated the impact of root exudates from compatible host plant species; Elaeagnus angustifolia on the exoproteome of Parafrankia soli strain NRRL B-16219. A total of 565 proteins were evidenced as differentially abundant, with 32 upregulated and 533 downregulated in presence of the plant exudates. Analysis of the function of these proteins suggests that the bacterial strain is undergoing a complex metabolic reprogramming towards a new developmental phase elicited in presence of host plant root exudates. The upregulation of Type II/IV secretion system proteins among the differentially expressed proteins indicates their possible role in infecting the host plant, as shown for some rhizobia. Additionally, EF-Tu, proteins upregulated in this study, may function as an effector for the T4SSs and trigger plant defense responses. These findings suggest that Parafrankia soli may use EF-Tu to infect the actinorhizal host plant and pave the way for further investigations of the molecular mechanisms underlying the establishment of symbiotic relationships.

Hatching of Globodera pallida Induced by Root Exudates Is Not Influenced by Soil Microbiota Composition.

Plant-parasitic nematodes are among the most harmful pests of cultivated crops causing important economic losses. The ban of chemical nematicides requires the development of alternative agroecological approaches to protect crops against nematodes. For cyst nematodes, egg hatching is stimulated by host plant root exudates. Inducing “suicide hatching” of nematode second-stage juveniles (J2), using root exudates in the absence of the host plant, may constitute an effective and innovative biocontrol method to control cyst nematodes. However, before considering the development of this approach, understanding the effect of soil biotic component on cyst nematode hatching by root exudates is a major issue. The effectiveness of this approach could be modulated by other soil organisms consuming root exudates for growth as soil microbiota, and this must be evaluated. To do that, four different native agricultural soils were selected based on their physicochemical properties and their microbiota composition were characterized by rDNA metabarcoding. To disentangle the effect of microbiota from that of soil on hatching, four recolonized artificial soils were obtained by inoculating a common sterile soil matrix with the microbiota proceeding from each agricultural soil. Each soil was then inoculated with cysts of the potato cyst nematode, Globodera pallida, and low or high doses of potato root exudates (PREs) were applied. After 40 days, viable J2 remaining in cysts were counted to determine the efficiency of root exudates to stimulate hatching in different soils. Results showed that (i) when physicochemical and microbiota compositions varied among native soils, the hatching rates remained very high albeit small differences were measured and no dose effect was detected and (ii) when only microbiota composition varied among recolonized soils, the hatching rates were also high at the highest dose of PREs, but a strong dose effect was highlighted. This study shows that abiotic and biotic factors may not compromise the development of methods based on suicide hatching of cyst nematodes, using root exudates, molecules inducing J2 hatch, or trap crops.

Plant Root-Exudates Recruit Hyperparasitic Bacteria of Phytonematodes by Altered Cuticle Aging: Implications for Biological Control Strategies.

Phytonematodes are globally important functional components of the belowground ecology in both natural and agricultural soils; they are a diverse group of which some species are economically important pests, and environmentally benign control strategies are being sought to control them. Using eco-evolutionary theory, we test the hypothesis that root-exudates of host plants will increase the ability of a hyperparasitic bacteria, Pasteuria penetrans and other closely related bacteria, to infect their homologous pest nematodes, whereas non-host root exudates will not. Plant root-exudates from good hosts, poor hosts and non-hosts were characterized by gas chromatography-mass spectrometry (GC/MS) and we explore their interaction on the attachment of the hyperparasitic bacterial endospores to homologous and heterologous pest nematode cuticles. Although GC/MS did not identify any individual compounds as responsible for changes in cuticle susceptibility to endospore adhesion, standardized spore binding assays showed that Pasteuria endospore adhesion decreased with nematode age, and that infective juveniles pre-treated with homologous host root-exudates reduced the aging process and increased attachment of endospores to the nematode cuticle, whereas non-host root-exudates did not. We develop a working model in which plant root exudates manipulate the nematode cuticle aging process, and thereby, through increased bacterial endospore attachment, increase bacterial infection of pest nematodes. This we suggest would lead to a reduction of plant-parasitic nematode burden on the roots and increases plant fitness. Therefore, by the judicious manipulation of environmental factors produced by the plant root and by careful crop rotation this knowledge can help in the development of environmentally benign control strategies.

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida

Potato cyst nematodes (PCNs), Globodera rostochiensis and G. pallida, cause important economic losses. They are hard to manage because of their ability to remain dormant in soil for many years. Although general knowledge about these plant parasitic nematodes has considerably increased over the past decades, very little is known about molecular events involved in cyst dormancy and hatching, two key steps of their development. Here, we have studied the progression of PCN transcriptomes from dry cysts to hatched juveniles using RNA-Seq. We found that several cell detoxification-related genes were highly active in the dry cysts. Many genes linked to an increase of calcium and water uptake were up-regulated during transition from dormancy to hydration. Exposure of hydrated cysts to host plant root exudates resulted in different transcriptional response between species. After 48 h of exposure, G. pallida cysts showed no significant modulation of gene expression while G. rostochiensis had 278 differentially expressed genes. The first G. rostochiensis significantly up-regulated gene was observed after 8 h and was coding for a transmembrane metalloprotease. This enzyme is able to activate/inactivate peptide hormones and could be involved in a cascade of events leading to hatching. Several known effector genes were also up-regulated during hatching.

Root exudates from two tobacco cultivars affect colonization of Ralstonia solanacearum and the disease index

The colonization of rhizosphere by microorganisms is directly associated with bacterial growth, chemotaxis, biofilm formation, and the interaction with host plant root exudates. In this study, the responses of Ralstonia solanacearum to the root exudates from two tobacco cultivars (Hongda, susceptible; K326, resistant) were determined. The results showed that the population of R. solanacearum was much higher in the rhizosphere soil of Hongda than in the rhizosphere soil of K326, resulting in a higher disease index for the Hongda treatments (92.73 %). The attraction of R. solanacearum to Hongda root exudates (HRE) was stronger than the response to K326 root exudates (KRE). Four organic acids, oxalic acid, malic acid, citric acid, and succinic acid, from the root exudates were identified and subsequently evaluated. The amount of oxalic acid from HRE was significantly higher than that from KRE. The results also showed that oxalic acid could both significantly induce the chemotactic response and increase the biofilm biomass of R. solanacearum. Both malic acid and citric acid could significantly increase the chemotaxis ability in vitro and the recruitment of R. solanacearum to tobacco root under gnotobiotic conditions. Overall, these data suggested that the colonization of tobacco rhizosphere by pathogenic bacterial strains was influenced by the organic acids secreted from the roots. The results expand our understanding of the roles of root exudates in plant-microbe interactions and will be useful for screening and applying beneficial bacteria for better control of plant wilt diseases.

Behavioural response of wheat bulb fly (Delia coarctata, Diptera: Anthomyiidae) larvae to the primary plant metabolite carbon dioxide

Wheat bulb fly (WBF) larvae use chemotaxis to orientate towards host-plant root exudates. This study aimed to investigate the role of the primary plant metabolite carbon dioxide (CO2) in host-plant location by WBF. Arena based behavioural experiments were used to identify whether CO2 induced chemotaxis (directional movement in response to a chemical stimulus) or kinesis (non-directional movement in response to a stimulus) from WBF larvae. No chemotactic response was observed when larvae were presented to a point source of CO2. However, elevated levels of CO2 induced kinesis, with both track length and tortuosity (number of twists and turns in the movement path) increasing at elevated CO2 levels of 1000-2000ppm, demonstrating increased searching behaviour. Soil emission of CO2 was quantified to compare soil levels with those identified as eliciting behavioural effects on the larvae. Samples removed from soil gave a mean CO2 concentration of 557 (±46) ppm, which is lower than the lowest concentration of CO2 found to induce a behavioural response and higher than the lowest CO2 concentration tested, which was found not to alter behaviour. It is proposed that increased CO2 concentrations in the soil act as a behavioural trigger, inducing intensive searching of an area by WBF larvae. This increases the likelihood of finding more host-specific identifiers, such as secondary metabolites when near a potential host-plant.

Wheat bulb fly (Delia coarctata, Fallén, Diptera: Anthomyiidae) larval response to hydroxamic acid constituents of host-plant root exudates

Wheat bulb fly (WBF, Delia coarctata, Fallén, Diptera: Anthomyiidae) is a pest of commercial importance in wheat, barley and rye, with attacked crops failing to produce full potential yields. Females do not oviposit in association with a host-plant; therefore, prompt location of a suitable host is critical to the survival of the newly hatched larvae. The objective of this study was to conduct choice test bioassays to assess the attraction of WBF larvae to specific chemical constituents of WBF host-plant root exudates, the hydroxamic acids DIMBOA (2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one) and MBOA (6-methoxy-benzoxazolin-2-one). The larval response to four concentrations of each test compound was assessed in arena bioassays. Analysis using a Rayleigh test of uniformity of the final resting positions of larvae in response to these chemicals indicated attraction. These results go some way to explaining the mechanisms by which WBF larvae locate host plants, giving the potential to develop semiochemical based control strategies.

A high-throughput seed germination assay for root parasitic plants

BackgroundSome root-parasitic plants belonging to the Orobanche, Phelipanche or Striga genus represent one of the most destructive and intractable weed problems to agricultural production in both developed and developing countries. Compared with most of the other weeds, parasitic weeds are difficult to control by conventional methods because of their life style. The main difficulties that currently limit the development of successful control methods are the ability of the parasite to produce a tremendous number of tiny seeds that may remain viable in the soil for more than 15 years. Seed germination requires induction by stimulants present in root exudates of host plants. Researches performed on these minute seeds are until now tedious and time-consuming because germination rate is usually evaluated in Petri-dish by counting germinated seeds under a binocular microscope.ResultsWe developed an easy and fast method for germination rate determination based on a standardized 96-well plate test coupled with spectrophotometric reading of tetrazolium salt (MTT) reduction. We adapted the Mosmann’s protocol for cell cultures to germinating seeds and determined the conditions of seed stimulation and germination, MTT staining and formazan salt solubilization required to obtain a linear relationship between absorbance and germination rate. Dose–response analyses were presented as applications of interest for assessing half maximal effective or inhibitory concentrations of germination stimulants (strigolactones) or inhibitors (ABA), respectively, using four parameter logistic curves.ConclusionThe developed MTT system is simple and accurate. It yields reproducible results for germination bioassays of parasitic plant seeds. This method is adapted to high-throughput screenings of allelochemicals (stimulants, inhibitors) or biological extracts on parasitic plant seed germination, and strengthens the investigations of distinctive features of parasitic plant germination.

The effect of organic acids from tomato root exudates on rhizosphere colonization of Bacillus amyloliquefaciens T-5

Root colonization by Bacillus amyloliquefaciens is directly related to bacterial growth, chemotaxis, biofilm formation, and the interaction with host plant root exudates. In this study, root exudates were collected from two tomato plant varieties that supported bacterial cell division and induced the B. amyloliquefaciens T-5 chemotactic response, even at the concentration of 10μgml−1. Root exudates also induced biofilm formation, but lower than control treatment. In addition, five organic acids were identified in the root exudates and subsequently evaluated. Malic acid, citric acid, succinic acid and fumaric acid significantly induced the chemotaxis response and swarming motility. Maximal chemotactic response and swarming motility were induced by malic acid, and all the organic acid did not have a significant effect on biofilm formation. Furthermore, these organic acids promoted the B. amyloliquefaciens T-5 recruitment under gnotobiotic conditions, increasing the rhizosphere bacterial population. This data suggested that tomato root colonization by B. amyloliquefaciens T-5 was influenced by organic acids secreted by roots. This study expands our understanding of B. amyloliquefaciens T-5 colonization on tomato roots under natural conditions and reflects the significance of B. amyloliquefaciens T-5 strain as biocontrol agent which will be useful for preparing formulations for the better control of plant wilt diseases.

Diverse Flavonoids Stimulate NodD1 Binding tonodGene Promoters inSinorhizobium meliloti

NodD1 is a member of the NodD family of LysR-type transcriptional regulators that mediates the expression of nodulation (nod) genes in the soil bacterium Sinorhizobium meliloti. Each species of rhizobia establishes a symbiosis with a limited set of leguminous plants. This host specificity results in part from a NodD-dependent upregulation of nod genes in response to a cocktail of flavonoids in the host plant's root exudates. To demonstrate that NodD is a key determinant of host specificity, we expressed nodD genes from different species of rhizobia in a strain of S. meliloti lacking endogenous NodD activity. We observed that nod gene expression was initiated in response to distinct sets of flavonoid inducers depending on the source of NodD. To better understand the effects of flavonoids on NodD, we assayed the DNA binding activity of S. meliloti NodD1 treated with the flavonoid inducer luteolin. In the presence of luteolin, NodD1 exhibited increased binding to nod gene promoters compared to binding in the absence of luteolin. Surprisingly, although they do not stimulate nod gene expression in S. meliloti, the flavonoids naringenin, eriodictyol, and daidzein also stimulated an increase in the DNA binding affinity of NodD1 to nod gene promoters. In vivo competition assays demonstrate that noninducing flavonoids act as competitive inhibitors of luteolin, suggesting that both inducing and noninducing flavonoids are able to directly bind to NodD1 and mediate conformational changes at nod gene promoters but that only luteolin is capable of promoting the downstream changes necessary for nod gene induction.

Mathematical modeling of PGPR inoculation into the rhizosphere

One of the main problems when introducing beneficial microbes to the plant rhizosphere is that the plant growth promoting rhizobacteria (PGPR) do not survive or do not execute their specific function. The goal of our research was to evaluate microbial inoculant survival in rhizospheres, using mathematical modeling and computer-based simulations. We tested several abiotic factors effects on PGPR survival: the availability of soluble organic compounds and molecular oxygen, and the concentration of mineral nitrogen in soil. The principal biotic factors considered were the direct and indirect interactions between PGPR and resident microorganisms, protozoan predation, and bacterial parasitism. A model system of four non-linear ordinary differential equations was developed to simulate the growth of PGPR populations in the rhizosphere. Simulation results indicated that the competition for limiting resources between the introduced population and the resident microorganisms was the most important factor determining PGPR survival. The most effective PGPR inoculation was expected in organic and mineral poor soils or stressed soils, when development of the resident microflora was inhibited. Another important factor for PGPR survival was compatibility between the composition of the host plant root exudates, and ability of the PGPR to utilize those compounds.

Expression of Nodulation Genes in Rhizobium and Acid-Sensitivity of Nodule Formation

The formation of nitrogen-fixing nodules on roots of leguminous plants by Rhizobium spp. involves a complex interaction between host plant and symbiont. Successful nodulation requires the coordinated expression of several nodulation (nod) genes in the bacteria. The expression of these genes is induced by flavonoid compounds present in root exudates of host plants. Growth of Rhizobium spp. and formation of nodules on roots of leguminous plants is known to be adversely affected by low pH and factors associated with soil acidity, but the basis of this acid-sensitivity is poorly understood. We consider that poor induction of nodulation gene expression in Rhizobium is a major factor contributing to the acid-sensitivity of nodulation formation. At low pH, induction of nod gene expression in R. leguminosarum biovar trifolii is markedly reduced in the presence of flavone-inducer. Furthermore, inducibility of nod gene expression in R. leguminosarum bv. trifolii is also affected by a net reduction in the concentration of nod gene-inducing factors present in the root exudates of clover seedlings grown in acidic conditions.

Germination stimulants of Alectra vogeliiBenth seed

Summary Root exudates of host plants of A. vogelii contain substances which stimulate the germination of the sensitised parasite seed. These stimulants could be resolved in a high pressure liquid chromatography system into a number of stimulatory zones, at least two of which were apparently common to all the investigated hosts.