The immobilization of nuclear waste containing various actinides requires the actinide host phases to maintain long-term stability under alpha decay damage. In this study, the irradiation resistance to amorphization of fluorapatite compounds with the formula of Ca9REE(PO4)5(SiO4)F2 (REE: rare earth element, REE = La, Nd, Sm, Tb, Er, and Lu) were investigated, where REEs3+ with decreased ionic radii were used to simulate actinides in immobilization wastes. In-situ 800 keV Kr2+ irradiation was performed with varying temperatures. The critical amorphization temperature, Tc, for these apatites were found to be 513.8, 503.7, 494.1, 493.7, 483.1 and 460.9 K, respectively. Tc shows a distinct decreasing trend with the decrease of ionic radii of doped REEs3+, indicating enhanced irradiation resistance. The selected REEs exhibited increasing electronegativity, which correlated with an increase in bonding ionic properties. This trend is unfavourable for the formation of a covalent network, thereby enhancing irradiation resistance. Besides, the decreased ionic radii of doped REEs3+ enhanced the migration and diffusion rates of smaller REE3+ after the collision cascade process. Additionally, the dopant REEs3+ showed a significant preference for CaⅡ sites. This preference decreased as the ionic radius of doped REE3+ and reduced the average ionic radius of CaⅠ sites. Consequently, the one-dimensional channel in apatite became larger, facilitating the rearrangement of F− ion. This study investigated the irradiation-induced amorphization of REE-silicon doped fluorapatites and the results highlighted the importance of composition of immobilization materials on irradiation performance.