Our understanding of dinoflagellates' present-day and past ecology is limited due to the scarcity of data on the transport of dinoflagellate cysts in oceanic environments. Previous studies have shown that lateral transport affects the source-to-sink trajectory of cysts in the very productive region off Cape Blanc (NW Africa). Unsolved questions remain, such as: how far these cysts can be advected, whether the cyst sources vary over time and whether lateral transport is a permanent feature or restricted to individual events. To fill these gaps and assess the role of nepheloid layers on the lateral transport and preservation of dinoflagellate cysts, new data on dinoflagellate cyst distributions in the water column and sediments along a land-sea transect were obtained.Samples were collected in November 2018 along a shelf break-offshore transect during intense upwelling, notably, within and between the nepheloid layers. The composition and abundance of cysts with organic walls in the water column and surface sediments were studied. Moreover, the distribution of calcareous cysts was also analysed in the water samples, using non-destructive acid-free preparation methods. The records were dominated by empty cysts, but no clear indications that these originated from local resuspension of older sediments were observed. Clustering, principal component analysis and redundant discriminant analysis were used to compare cyst assemblages in the water column and surface sediments, and environmental conditions in the upper water column. The strong similarity in species composition of water samples collected in the active upwelling region to those collected from the more onshore parts of the Benthic Nepheloid Layer (BNL), upper Intermediate Nepheloid Layer (INL) (∼1000 m depth) and lower INL (∼2200 m depth) indicated that lateral transport of cysts within these NLs occurred until about ∼110 km from the shelf break. Cyst assemblages from above and below these NLs showed significantly different taxa composition reinforcing the role of NLs in the lateral advection of cysts. In the more offshore stations, vertically similar cyst assemblages were observed in the same station, independent of the sample depth, within or between the NLs, which supported that at these stations vertical transport was the dominant process influencing cyst assemblages. Consequently, the cyst signal in sediments off Cape Blanc may be affected both by horizontal transport of allochthonous cysts and vertical deposition of locally-produced cysts, particularly in the more offshore stations (>2000 m depth). Despite lateral transport and possible species-specific preservation effects, horizontal distributions of most cyst taxa in the water column and the surface sediments could be explained to a great extent by the main environmental gradients in the upper water column. This agrees with observations made in other regions, and reinforces that dinoflagellate cysts as good proxies to reconstruct past environmental conditions in offshore environments. New data on dinoflagellate cyst distribution, transport and accumulation patterns in deep environments off Cape Blanc may be useful for interpreting past environmental signals in the region. This is particularly relevant regarding calcareous cysts, as information on their distribution and ecology is very scarce. The present work contributes to a better understanding of the dispersal patterns of dinoflagellate cysts in the deep ocean, highlighting the significant role played by nepheloid layers in this process and thus on the dinoflagellate cyst signature in deep-sea sediments.