Poor rate capability and cycling performance significantly impair the utilization of NiCo2S4 as an anode material in sodium-ion batteries. Herein, hollow mesoporous carbon spheres (HMCSs) are synthesized using a hard-template method. NiCo2S4 nanoparticles with sizes ranging from 15 to 43 nm are grown in-situ within HMCSs (NiCo2S4@HMCS) by melt adsorption, solution impregnation, and gas-phase sulfurization. Specifically, NiCo2S4 nanoparticles are uniformly distributed on the inner walls of HMCSs and within the mesoporous channels of spherical shells. In half-cells, NiCo2S4@HMCS exhibits reversible capacities of 482 mAh g−1 after 340 cycles at 1.0 A g−1, 340 mAh g−1 after 600 cycles at 5.0 A g−1, and 271 mAh g−1 after 700 cycles at 10.0 A g−1. In NiCo2S4@HMCS//Na3V2(PO4)3 full-cells, NiCo2S4@HMCS maintain reversible capacities of 203 mAh g−1 after 1200 cycles at 1.0 A g−1 and 122 mAh g−1 after 2000 cycles at 5.0 A g−1. The unique nano-encapsulated structure prevents the detachment of NiCo2S4 from HMCSs, maintaining electrochemical activity and stability of NiCo2S4. Additionally, the nano-encapsulated structure also facilitates electrolyte penetration and enhances the electronic conductivity of NiCo2S4. These effects synergistically result in rapid and stable sodium storage performance.