Cell penetrating peptides (CPPs) are cationic peptides which, when linked to proteins, genes, or nanoparticles, facilitate the transport of these entities across the cell membrane. Different models have been suggested for their mode of action. One possibility is the binding of CPPs to negatively charged lipids and the formation of non-bilayer structures. We have studied the binding of two CPPs (R9, HIV-1 TAT) to model membranes with isothermal titration calorimetry and observe indeed a strong binding to the membrane. However, the bilayer remains intact and non-bilayer structures can be excluded based on 2H- and 31P-NMR spectroscopy. A second mechanism is the binding of CPPs to sulfated sugars at the membrane surface, followed by endocytosis. We have characterized the binding of a large variety of CPPs to heparin sulfate (HS), heparin, and related sulfated glycosaminoglycans (GAGs) and find binding constants in the order of 106 - 107 M−1 per binding site. An even stronger interaction is found between CPPs and DNA with binding constants in 107 - 108 M−1. We have further synthesized a fluorescent derivative of the HIV-1 TAT protein transduction domain (Fg-CPPTAT(PTD)) and have observed its uptake into non-fixated living fibroblasts with time-lapse confocal microscopy. We find that Fg-CPPTAT(PTD) enters the cytoplasm and nucleus of non-fixated fibroblasts within seconds. With differential interference contrast microscopy we furthermore detect dense aggregates on the cell surface. Several observations suggest that these aggregates consist of Fg-CPPTAT(PTD) bound to membrane-associated heparan sulfate (HS). Finally a pore-forming peptide, melittin, also binds to sulfated GAGs but not magainin 2 or nisin Z. The binding of the melittin to lipid bilayers is furthermore an excellent model system to elucidate the thermodynamic parameters of membrane-induced α-helix and β-sheet formation..
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