Evolutionary History Research Articles

Genomes and epigenomes of matched normal and tumor breast tissue reveal diverse evolutionary trajectories and tumor-host interactions.

Normal tissues adjacent to the tumor (NATs) may harbor early breast carcinogenesis events driven by field cancerization. Although previous studies have characterized copy-number (CN) and transcriptomic alterations, the evolutionary history of NATs in breast cancer (BC) remains poorly characterized. Utilizing whole-genome sequencing (WGS), methylation profiling, and RNA sequencing (RNA-seq), we analyzed paired germline, NATs, and tumor samples from 43 individuals with BC in Hong Kong (HK). We found that single-nucleotide variants (SNVs) were common in NATs, with one-third of NAT samples exhibiting SNVs in driver genes, many of which were present in paired tumor samples. The most frequently mutated genes in both tumor and NAT samples were PIK3CA, TP53, GATA3, and AKT1. In contrast, large-scale aberrations such as somatic CN alterations (SCNAs) and structural variants (SVs) were rarely detected in NAT samples. We generated phylogenetic trees to investigate the evolutionary history of paired NAT and tumor samples. They could be categorized into tumor only, shared, and multiple-tree groups, the last of which is concordant with non-genetic field cancerization. These groups exhibited distinct genomic and epigenomic characteristics in both NAT and tumor samples.Specifically, NAT samples in the shared-tree group showed higher number of mutations, while NAT samples belonging to the multiple-tree group showed a less inflammatory tumor microenvironment (TME), characterized by a higher proportion ofregulatory Tcells (Tregs) and lower presence of CD14 cell populations. In summary, our findings highlight the diverse evolutionary history in BC NAT/tumor pairs and the impact of field cancerization and TME in shaping the genomic evolutionary historyof tumors.

Comprehensive Phylogenomic Analysis of Zika Virus: Insights into Its Origin, Past Evolutionary Dynamics, and Global Spread.

Zika virus (ZIKV), a Flaviviridae family member, has been linked to severe neurological disorders. Despite detailed studies on recent outbreaks, the early evolutionary history of ZIKV remains partially unclear. This study elucidates ZIKV origin and evolutionary dynamics, focusing on recombination events, early lineage diversification, and virus spread across continents. We assessed recombination using multiple methods. We conducted Bayesian phylogenetic analyses to understand the evolutionary relationships and timing of key diversification events. Model selection was carried out to determine the most appropriate evolutionary model for our dataset. Our phylogenies revealed recent recombination between Singaporean and African lineages, indicating the co-circulation of diverse lineages during outbreaks. Thailand was identified as a crucial hub in the spread across Asia. The phylogenetic analysis suggests that the ZIKV lineage dates back to the eleventh century, with the first significant diversification occurring in the nineteenth century. The timing of the re-introduction of the Asian lineage into Africa and the delay between probable introduction and outbreak onset were also determined. This study provides novel insights into ZIKV's origin and early evolutionary dynamics, highlighting Thailand's role in the spread of the virus in Asia and recent recombination events between distant lineages. These findings emphasize the need for continuous surveillance and a better understanding of ZIKV biology to forecast and mitigate future outbreaks.

Genome-Wide Development and Characterization of Microsatellite Markers in the Great Web-Spinning Sawfly Acantholyda posticalis.

The great web-spinning sawfly Acantholyda posticalis is notorious for damaging Pinus forests across the Palearctic region. At present, uncertainties persist regarding its intraspecies variation and presumed subspecies. To use as tools for future studies, herein we developed genome-wide microsatellite markers for A. posticalis. Through searching, rigorous manual screening, and amplification trial, 56 microsatellite markers were obtained from the genome sequences. We characterized these markers across two populations from Shandong province (SD) and Heilongjiang province (HLJ) in China, and carried out cross-amplification in three related species. Out of the 56 markers tested, 10, 31, and 15 were categorized into high, moderate, and low polymorphic levels, respectively, based on their polymorphic information content (PIC) values. Meanwhile, 28, 19, and 4 microsatellite loci were successfully cross-amplified in Cephalcia yanqingensis, C. chuxiongica, and C. infumata, respectively, which could serve as potential molecular markers for their further studies. STRUCTURE and PCoA analyses revealed two distinct clusters corresponding to SD and HLJ, respectively, indicating a high resolution of these markers. Therefore，the 56 microsatellite markers identified here have the potential to serve as efficient tools for unraveling intraspecies variation and evolutionary history of A. posticalis.

Lineage Differentiation and Genomic Vulnerability in a Relict Tree From Subtropical Forests.

The subtropical forests of East Asia are renowned for their high plant diversity, particularly the abundance of ancient relict species. However, both the evolutionary history of these relict species and their capacity for resilience in the face of impending climatic changes remain unclear. Using whole-genome resequencing data, we investigated the lineage differentiation and demographic history of the relict and endangered tree, Bretschneidera sinensis (Akaniaceae). We employed a combination of population genomic and landscape genomic approaches to evaluate variation in mutation load and genomic offset, aiming to predict how different populations may respond to climate change. Our analysis revealed a profound genomic divergence between the East and West lineages, likely as the result of recurrent bottlenecks due to climatic fluctuations during the glacial period. Furthermore, we identified several genes potentially linked to growth characteristics and hypoxia response that had been subjected to positive selection during the lineage differentiation. Our assessment of genomic vulnerability uncovered a significantly higher mutation load and genomic offset in the edge populations of B. sinensis compared to their core counterparts. This implies that the edge populations are likely to experience the most significant impact from the predicted climate conditions. Overall, our research sheds light on the historical lineage differentiation and contemporary genomic vulnerability of B. sinensis. Broadening our understanding of the speciation history and future resilience of relict and endangered species such as B. sinensis, is crucial in developing effective conservation strategies in anticipation of future climatic changes.

How does a soft collision orogen uplift and collapse? Insight from the eastern Central Asian Orogenic Belt

The mechanism of uplift and collapse is critical for understanding orogenic evolution within the Wilson cycle. The Central Asian Orogenic Belt (CAOB) represents one of the largest Phanerozoic accretionary orogens on Earth, experiencing terminal soft collision following the closure of the Paleo-Asian Ocean. However, the timing and mechanism of crustal thickening and thinning in the eastern CAOB remain unclear. Here, we present geochronological, mineralogical, geochemical, and Sr-Nd-Hf isotopic data of the newly identified Late Triassic bimodal dike associations in the easternmost CAOB. The ca. 236−230 Ma mafic dikes can be divided into two groups based on petrographic and geochemical characteristics. Major element modeling using the MELTS software indicates that they evolved via independent differentiation paths. Trace element and isotope simulations reveal that the ca. 236−230 Ma mafic dikes originated from the 4%−10% partial melting of spinel- to garnet-lherzolite lithospheric mantle sources over a range of depths, with varying inputs of asthenospheric mantle materials. Coeval ca. 233 Ma felsic dikes exhibit adakitic geochemical characteristics and strong imprints of crust-mantle interaction, suggesting derivation from melting of a heated juvenile mafic lower crust as a result of the upwelling of asthenospheric mantle. The formation of bimodal dike associations records the transition from lithospheric mantle thinning to delamination. Integrating a large dataset and employing multiple geochemical proxies, our results reveal that the crust of the easternmost CAOB reached a thickness of 54 ± 3 km at ca. 280−255 Ma, likely resulting from magmatic underplating due to rollback of the subducting Paleo-Asian Oceanic slab. This region underwent a further slight increase in crustal thickness to 61 ± 2 km at ca. 254−237 Ma in response to limited tectonic shortening associated with soft collision orogeny before it thinned to 45 ± 13 km at ca. 236−210 Ma due to lithospheric delamination during post-collisional extension. Our findings reveal that the uplift of the eastern CAOB was primarily driven by magmatic underplating, with minimal contribution from tectonic shortening. Lithospheric delamination emerged as an important factor leading to the eventual collapse of the eastern CAOB. Compared to typical hard collisional orogens (e.g., the Himalaya-Tibet orogen), the CAOB experienced significantly weaker tectonic shortening followed by similar lithospheric delamination during post-collisional extension. This study highlights the importance of integrating geochemical and isotopic data in quantifying the complex evolutionary histories of ancient collisional orogenic belts.

The complete genome sequence of the chloroplast of Bidens aurea.

Bidens aurea (Asteraceae), a native of tropical America is now widespread in Asia and the Americas. We explored the B. aurea chloroplast genome and conducted a phylogenetic analysis. The chloroplast genome was circular, consisting of a large single copy (LSC) of 83,909 base pairs (bp), a small single copy (SSC) of 18,407 bp, and two inverted repeat regions (IR) of 24,729 bp each. Phylogenetic analysis showed that the 19 Bidens taxa were divided into five major clades, and B. aurea was most closely related to two species. Our findings offer a high-quality B. aurea chloroplast genome, aiding DNA barcode development and evolutionary history reconstruction.

Elevational patterns of species richness and phylogenetic diversity in a Mediterranean island

Understanding the abiotic factors influencing biodiversity patterns on Earth is a crucial task for conservation scientists. At the regional level, meso-climate factors, primarily associated with elevational gradients, are of great importance. However, disentangling these factors can be challenging due to the influence of other variables, such as geological substrata. To address this issue and better understand elevational gradients, it is essential to study geologically homogeneous terrains, particularly in Mediterranean islands where such research is lacking. In this study, we investigated the distribution of plant species richness along the elevational gradient of the Limbara massif, which consists predominantly of granite rocks and ranks as the third-highest peak in Sardinia at 1,359 meters a.s.l. We employed generalized linear models to analyze richness patterns, considering various factors, including all plant species, functional species groups categorized by Raunkiær life forms, chorological groups of species, alien species and phylogenetic diversity. Our findings revealed a hump-shaped model of species richness along the elevational gradient, with lower elevations exhibiting the highest species richness. Additionally, endemic species richness increased with higher elevations, while alien species were predominantly found at lower elevations. These results indicate that the Limbara massif possesses a significant elevational gradient in species composition, likely reflecting a unique plant evolutionary history. Furthermore, we emphasize the importance of published floras as valuable sources of biodiversity data for such studies.

Influenza A Viruses in the Swine Population: Ecology and Geographical Distribution

Despite the efforts of practical medicine and virology, influenza viruses remain the most important pathogens affecting human and animal health. Swine are exposed to infection with all types of influenza A, B, C, and D viruses. Influenza viruses have low pathogenicity for swine, but in the case of co-infection with other pathogens, the outcome can be much more serious, even fatal. Having a high zoonotic potential, swine play an important role in the ecology and spread of influenza to humans. In this study, we review the state of the scientific literature on the zoonotic spread of swine influenza A viruses among humans, their circulation in swine populations worldwide, reverse zoonosis from humans to swine, and their role in interspecies transmission. The analysis covers a long period to trace the ecology and evolutionary history of influenza A viruses in swine. The following databases were used to search the literature: Scopus, Web of Science, Google Scholar, and PubMed. In this review, 314 papers are considered: n = 107 from Asia, n = 93 from the U.S., n = 86 from Europe, n = 20 from Africa, and n = 8 from Australia. According to the date of publication, they are conditionally divided into three groups: contemporary, released from 2011 to the present (n = 121); 2000–2010 (n = 108); and 1919–1999 (n = 85).

Evolution of the Formula One front wing assembly

Abstract. The front wing is an important component of the F1 racing car. It is used to generate pressure on the front axle and guides the airflow around and below the vehicle. The main function of the front wing of an F1 racing car is to provide downforce and enhance the car's grip of wheels. The front wing can also bifurcate the airflow from the tires to improve backward airflow and underfloor airflow. This review will mainly discuss the historical evolution of the front wing, the advantages and disadvantages of the design and some application from the professional team. The paper will aim to put forward suggestions and improvement measures for the existing problems, which may provide new ideas for the development of high-performance racing cars.

Testing the Accuracy of Spectral Energy Distribution Modeling Techniques Using the NIHAO-SKIRT-Catalog

We use simulated galaxy observations from the NIHAO-SKIRT-Catalog to test the accuracy of spectral energy distribution (SED) modeling techniques. SED modeling is an essential tool for inferring star formation histories from nearby galaxy observations but is fraught with difficulty due to our incomplete understanding of stellar populations, chemical enrichment processes, and the nonlinear, geometry-dependent effects of dust. The NIHAO-SKIRT-Catalog uses hydrodynamic simulations and radiative transfer to produce SEDs from the ultraviolet (UV) through the infrared (IR), accounting for dust. We use the commonly used Prospector software to perform inference on these SEDs and compare the inferred stellar masses and star formation rates (SFRs) to the known values in the simulation. We match the stellar population models to isolate the effects of differences in the star formation history, the chemical evolution history, and the dust. For the high-mass NIHAO galaxies (>109.5 M ⊙), we find that model mismatches lead to inferred SFRs that are on average underestimated by a factor of 2 when fit to UV through IR photometry, and a factor of 3 when fit to UV through optical photometry. These biases lead to significant inaccuracies in the resulting specific SFR–mass relations, with UV through optical fits showing particularly strong deviations from the true relation of the simulated galaxies. In the context of massive existing and upcoming photometric surveys, these results highlight that star formation history inference from photometry may remain imprecise and inaccurate and that there is a pressing need for more realistic testing of existing techniques.

Evolutionary Analysis and Catalytic Function of LOG Proteins in Plants

Background: The plant hormone cytokinin is a conserved regulator of plant development. LONELY GUY (LOG) proteins are pivotal in cytokinin biosynthesis. However, their origin, evolutionary history, and enzymatic characteristics remain largely uncharacterized. Methods: To elucidate LOG family evolution history and protein motif composition, we conducted phylogenetic and motif analyses encompassing representative species across the whole green plant lineage. Catalytic activity and structure analysis were conducted to thoroughly characterize the LOG proteins. Results: Our phylogeny showed that LOG proteins could be divided into five groups and revealed three major duplication events giving rise to four distinct groups of vascular LOG proteins. LOG proteins share a conserved structure characterized by a canonical motif arrangement comprising motifs 1, 2, 3, 4, 5, 6, and 7. Two significant changes in LOG motif composition occurred during the transition to land plants: the emergence of motif 3 in charophyte LOG sequences and the subsequent acquisition of motif 8 at the C-terminus of LOG proteins. Enzymatic assays demonstrated that LOG proteins can be classified into two groups based on their enzyme activity. One group act as cytokinin riboside 5′-monophosphate phosphoribohydrolase and primarily convert iPRMP to iP, while the other group act as 5′-ribonucleotide phosphohydrolase, and preferentially produce iPR from the same substrates. TaLOG5-4A1, TaLOG5-4A2, TaLOG5-5B2, and TaLOG5-D1 shared conserved residues in the critical motif and were predicted to have similar protein structures, but displayed distinct enzymatic activities. Conclusions: Our findings provide a comprehensive overview of LOG protein phylogeny and lay a foundation for further investigations into their functional diversification.

Evolutionary Dynamics and Pathogenicity Analysis of Feline Panleukopenia Virus in Xinjiang, China

Feline panleukopenia virus (FPV), a globally pervasive and highly pathogenic pathogen, has garnered significant attention recently due to the cross-species transmission of its variants. Despite the vast body of research conducted on FPV, studies exploring its evolutionary history, dynamics, and the factors driving its evolution remain scarce. The pathogenicity of strains with the prevalent mutations (A91S and I101T) in the VP2 protein has also not been fully elucidated. This study conducted a comparative analysis of FPV VP2 sequences sourced from Xinjiang province in China, other provinces in China, and other countries. It was confirmed that the evolutionary rate of FPV approached that of RNA viruses, at approximately 1.13 × 10−4 substitutions/site/year. The study reconstructed molecular models of the VP2 protein with the A91S and I101T mutations and used viral strains carrying these mutations to perform the animal regression experiment. It was confirmed that isolates with the A91S and I101T mutations could cause typical leukopenia and acute enteritis symptoms, suggesting that the mutant strains still possess certain pathogenicity. This is the first study to report on the evolutionary dynamics of FPV in Xinjiang, China, and it emphasized the importance of continuously monitoring FPV evolutionary dynamics.

Molecular phylogenetic and biogeographic evidence of Lepidagathis Willd. (Acanthaceae, Barlerieae) focusing on Indian endemics

Lepidagathis Willd., a genus belonging to the Acanthaceae family, is primarily distributed in tropical and subtropical regions worldwide, encompassing approximately 153 species. While considerable morphological research has been conducted on Lepidagathis, it has not completely dispelled taxonomic ambiguities and conflicting interpretations. Molecular analysis emerges as a valuable tool for resolving these taxonomic uncertainties, but the availability of nucleotide sequence data for Lepidagathis has been limited thus far. This study delivers a phylogenetic analysis of Lepidagathis species, utilizing both chloroplast and nuclear regions. The results of Bayesian Inference and Maximum Likelihood phylogenetic analyses consistently segregate the studied Lepidagathis species into two principal clades, denoted as Clade A and Clade B. Notably, this analysis firmly positions the Indian endemic Lepidagathis within Clade A, supported by robust statistical evidence. Furthermore, our biogeographical analysis strongly suggests that the origin of Lepidagathis might be traced back to Eurasia. This research establishes a foundational molecular phylogeny of Lepidagathis, offering valuable insights for future taxonomic investigations. Additionally, it sheds light on the evolutionary history and biogeographical origins of the Lepidagathis genus.

MEMS and ECM Sensor Technologies for Cardiorespiratory Sound Monitoring—A Comprehensive Review

This paper presents a comprehensive review of cardiorespiratory auscultation sensing devices (i.e., stethoscopes), which is useful for understanding the theoretical aspects and practical design notes. In this paper, we first introduce the acoustic properties of the heart and lungs, as well as a brief history of stethoscope evolution. Then, we discuss the basic concept of electret condenser microphones (ECMs) and a stethoscope based on them. Then, we discuss the microelectromechanical systems (MEMSs) technology, particularly focusing on piezoelectric transducer sensors. This paper comprehensively reviews sensing technologies for cardiorespiratory auscultation, emphasizing MEMS-based wearable designs in the past decade. To our knowledge, this is the first paper to summarize ECM and MEMS applications for heart and lung sound analysis.

ATO COOPERATIVO E O ADEQUADO TRATAMENTO TRIBUTÁRIO PARA AS COOPERATIVAS

This study has the general objective of studying the cooperative act and its appropriate tax treatment. In this way, we will reflect on the doctrine, initially providing a brief history of cooperativism, its origin and current evolution, with emphasis on its social character embodied by the corporate type and its principles. To obtain what we propose to do, we use bibliographical research in books, articles, periodicals, legislation and case law. The research results indicate that when it comes to the concept of a cooperative act, it has the reason of the cooperative, in terms of not acting in its own interest, thus seeking an intermediary between the cooperative member and the market. The Federal Constitution of 1988 provided significant changes to cooperatives, with the incentive being creation. Thus, it had the slightest intention of establishing an understanding which defines the elucidation of certain points selected or placed on the agenda for further discussions.

The literal meaning of Slur

This research explores the complex and multifaceted nature of slurs within modern sociolinguistic contexts. The study aims to dissect the power dynamics embedded in these terms, examining how slurs function as instruments of social control, perpetuating stereotypes and reinforcing social hierarchies. Through a combination of qualitative analysis and case studies, this research investigates the historical origins, evolution, and contemporary usage of slurs across different cultures and communities. The findings reveal that slurs are not merely offensive words but are laden with historical and cultural significance, often reflecting broader societal attitudes towards race, gender, sexuality, and other identity markers. The study also considers the psychological impact of slurs on individuals and groups, demonstrating how these terms can inflict lasting emotional harm and contribute to a hostile social environment. In addition, the research addresses the phenomenon of reappropriation, where marginalized groups reclaim slurs as a form of empowerment and resistance. This process is analyzed to understand its potential in challenging and subverting the oppressive connotations traditionally associated with these terms. Ultimately, this paper underscores the importance of recognizing the deep-seated implications of slurs in everyday language and advocates for a more nuanced approach to addressing linguistic discrimination. The research concludes with recommendations for fostering more inclusive and respectful communication practices in diverse social settings.

Phylogenetic and taxonomic revisions of Jurassic sea stars support a delayed evolutionary origin of the Asteriidae.

The superorder Forcipulatacea is a major clade of sea stars with approximately 400 extant species across three orders (Forcipulatida, Brisingida, Zorocallida). Over the past century, the systematics of Forcipulatacea have undergone multiple revisions by various authors, with some considering numerous families such as Asteriidae, Zoroasteridae, Pedicellasteridae, Stichasteridae, Heliasteridae, Labidiasteridae, and Neomorphasteridae, while others recognized only two families (i.e., Asteriidae and Zoroasteridae). Recent molecular analyses have shown the artificial nature of some of these groupings. Notably, four well-supported clades (Zorocallida, Brisingida, Stichasteridae, and Asteriidae) emerged from a synthesis of morphological and molecular evidence. The majority of extinct forcipulatacean species have been placed in modern families. However, many of these fossil species are in need of revision, especially those species placed within the Asteriidae, the largest of all forcipulatacean families. In light of recent advancements in forcipulatacean systematics, we comprehensively reassess six well-preserved Jurassic forcipulatacean taxa, including the earliest crown-group members from the Hettangian (∼201.4 Ma), and also describe two new Jurassic genera, Forbesasterias gen. nov. and Marbleaster gen. nov. We assembled the largest and most comprehensive phylogenetic matrix for this group, sampling 42 fossil and extant forcipulatacean species for 120 morphological characters. To infer phylogenetic relationships and construct an evolutionary timeline for the diversification of major clades, we conducted a Bayesian tip-dating analysis incorporating the fossilized birth-death process. A total of 13 fossil species were sampled in our analysis, including six taxonomically revaluated herein, two recently reappraised species from the Jurassic, and five additional species from the Cretaceous and Miocene. Contrary to prior assumptions, our results indicate that none of the Jurassic taxa investigated belong to Asteriidae or any other modern families, and instead represent stem-forcipulatids. Furthermore, our phylogenetic results suggest that Asteriidae likely originated during the late Cretaceous. Our findings highlight a greater early diversity within the Forcipulatacea than previously presumed, challenging existing perceptions of the evolutionary history of this significant clade of marine invertebrates.

Microbiome divergence of marine gastropod species separated by the Isthmus of Panama.

The rise of the Isthmus of Panama separated the populations of many marine organisms, which then diverged into new geminate sister species currently living in the Eastern Pacific Ocean and the Caribbean Sea. However, we know very little about how such evolutionary divergences of host species have shaped the compositions of their microbiomes. Here, we compared the microbiomes of whole-body and shell-surface samples of geminate species of marine gastropods in the genera Cerithium and Cerithideopsis to those of congeneric outgroups. Our results suggest that the effects of ~3 million years of separation and isolation on microbiome composition varied among host genera and between sample types within the same hosts. In the whole-body samples, microbiome compositions of geminate species pairs tended to be similar, likely due to host filtering, although the strength of this relationship varied among the two groups and across similarity metrics. Shell-surface microbiomes show contrasting patterns, with co-divergence between the host taxa and a small number of microbial clades evident in Cerithideopsis but not Cerithium. These results suggest that (i) isolation of host populations after the rise of the Isthmus of Panama affected microbiomes of geminate hosts in a complex and host-specific manner, and (ii) host-associated microbial taxa respond differently to vicariance events than the hosts themselves.IMPORTANCEWhile considerable work has been done on evolutionary divergences of marine species in response to the rise of the Isthmus of Panama, which separated two previously connected oceans, how this event shaped the microbiomes of these marine hosts remains poorly known. Using whole-body and shell-surface microbiomes of closely related gastropod species from opposite sides of the Isthmus, we show that divergences of microbial taxa after the formation of the Isthmus are often not concordant with those of their gastropod hosts. Our results show that evolutionary responses of marine gastropod-associated microbiomes to major environmental perturbations are complex and are shaped more by local environments than host evolutionary history.

Climatic and environmental changes since last deglaciation in the steppe region of northern China and their impact on early population survival patterns

The northern Chinese steppe is situated in the periphery of the East Asian Summer Monsoon and exhibits high sensitivity to variations in monsoon intensity and global climate change. Therefore, comprehending the climatic evolution history of this region is pivotal for elucidating early human civilization development. The research focuses on a fully enclosed crater lake located in the northern Chinese steppe by utilizing n-alkanes, total organic carbon (TOC), total nitrogen (TN) in lake sediments, based on AMS-14C dating analysis, the climatic and environmental evolution history of this region from the last deglaciation to the middle Holocene has been reconstructed, and the impact of climate change on the evolution of early human civilization is elucidated. The findings indicate that the EASM driven by summer solar radiation, exerts control over the climate and hydrology in the steppe region of northern China. Since the last deglaciation, the gradual warming and humidification of the climate environment have significantly enhanced the animal and plant resources, thereby establishing a solid foundation for the transition of early human populations in northern Chinese steppe from high-mobility hunter-gatherers to settled communities. Additionally, this climatic shift has provided an optimal backdrop for the emergence of primitive agriculture. The changes of stone tool assemblages unearthed at related sites also confirm the above views. However, the climate model underwent rapid changes during the period of 7.2–6.4 cal kyr BP, leading to the occurrence of extreme arid climate events. Consequently, regional precipitation decreased, lake ecology became imbalanced, woody plants retreated in the basin, and vegetation coverage was greatly reduced. The aforementioned factor may have played a pivotal role in the disappearance of early populations within the region. Consequently, climate and environmental change not only serve as the primary driving force behind human civilization’s development but also act as an inexorable catalyst for its decline.

Patterns of a sexually selected trait are not predictable across urban and non-urban populations of a songbird, the dark-eyed junco

Urbanization can result in novel selective pressures that can cause phenotypic differences amongst urban-tolerant species across urban and non-urban habitats. Here, we compared the size of the white tail patch (“tail white”), a sexual signaling trait, in two urban populations of dark-eyed juncos in comparison to neighboring non-urban populations. Contrary to our expectations, urban phenotypes did not differ from local wildlands in San Diego and Los Angeles counties in similar directions. While the San Diego population showed lower tail white compared to its neighboring wildland population, the Los Angeles population did not. The tail white of the Los Angeles population was not statistically different from that of the San Diego population, suggesting that urban populations may share similar environmental conditions yet face different selective clines due to urbanization. There were, however, differences between wildland populations. Differences in evolutionary histories, environmental conditions, and selective pressures within and outside urban areas may affect how urbanization facilitates population differentiation, even across urban populations of the same species.