The frequency and magnitude of extreme events, such as heat waves, are predicted to increase with climate change. However, assessments of the response of biological communities to heat waves are often inconclusive. We aimed to assess the responses in abundance, taxonomic and functional diversity indices of stream invertebrate communities to heat waves using long-term monitoring data collected across Europe. We quantified the heat waves' magnitude, analyzed the spatial (i.e., long-term mean) and temporal (anomaly around the long-term mean) components of variation in the magnitude of heat waves, and their interaction with anthropogenic stressors (ecological quality and land cover). For the spatial component of variation, we found a negative association of the community indices to the increasing magnitude of heat waves. Sites undergoing heat waves of higher magnitude showed fewer species and lower trait diversity compared with sites experiencing lower magnitude heat waves. However, we could not detect an immediate temporal response of the communities to heat waves (i.e., the temporal component). Furthermore, we found that the effects of heat waves interacted with the ecological quality of the streams and their surrounding land cover. Diversity declined with increasing heat waves' magnitude in streams with higher ecological quality or surrounded by forest, which may be due to a higher proportion of sensitive species in the community. Heat waves' impacts on diversity were also exacerbated by increasing urban cover. The interaction between heat waves' magnitude and anthropogenic stressors suggests that the effects of extreme events can compromise the recovery of communities. Further, the predicted increase in heat waves will likely have long-term effects on stream invertebrate communities that are currently undetected.