As one of the critical components in the proton exchange membrane fuel cell (PEMFC), the flow field is crucial to the improvement of cell performance. However, the current research on flow field structure lacks consideration of the influence of different anode modes, which makes the existing flow field structure rules have limitations in the practical application of PEMFC. In this paper, the PEMFC characteristics of parallel flow field, S-shaped flow field, multi-serpentine flow field and single-serpentine flow field at the cathode side are compared experimentally in the dead-end anode (DEA) mode and hydrogen circulation anode (HCA) mode, respectively. Especially, the spatial current density distribution and parasitic power of different flow field structures are measured. The results show that the performance trends of different flow field structures change with the DEA and HCA anode modes. In DEA mode, the PEMFC is prone to flooding, and the flow field with high gas velocity in the channel has better drainage ability, which can obtain higher cell performance. The HCA mode is helpful for the discharge of water in the PEMFC, which effectively alleviates the adverse impact of water accumulation on the overall performance, and the mass transport ability of the flow field structure plays a leading role in the cell performance improvement. In addition, although the high gas flow velocity has better drainage ability in the flow field, it may lead to a decrease in the current density distribution uniformity and PEMFC net output power density. Based on the comprehensive consideration of the experimental results, the multi-serpentine flow field is more suitable for DEA mode, and the S-shaped flow field is more suitable for HCA mode.