High Vagility Research Articles

Ancient DNA indicates a century of overhunting did not reduce genetic diversity in Pacific Walruses (Odobenus rosmarus divergens)

Pacific Walruses (Odobenus rosmarus divergens [Illiger 1815]) are gregarious marine mammals considered to be sentinels of the Arctic because of their dependence on sea ice for feeding, molting, and parturition. Like many other marine mammal species, their population sizes were decimated by historical overhunting in the nineteenth and twentieth centuries. Although they have since been protected from nearly all commercial hunting pressure, they now face rapidly accelerating habitat loss as global warming reduces the extent of summer sea ice in the Arctic. To investigate how genetic variation was impacted by overhunting, we obtained mitochondrial DNA sequences from historic Pacific Walrus samples in Alaska that predate the period of overhunting, as well as from extant populations. We found that genetic variation was unchanged over this period, suggesting Pacific Walruses are resilient to genetic attrition in response to reduced population size, and that this may be related to their high vagility and lack of population structure. Although Pacific Walruses will almost certainly continue to decline in number as the planet warms and summer sea ice is further reduced, they may be less susceptible to the ratcheting effects of inbreeding that typically accompany shrinking populations.

Paleoclimatic reconstruction of the Late Pleistocene Talara Tar Seeps, Peru, using fossil reptiles, small mammals, and birds

Functional traits of vertebrates can be used to infer paleoenvironmental conditions, allowing research into past climate changes and biotic responses. Birds are generally considered poor palaeoclimatic proxies due to their high vagility. Here, we analyze biogeographical and climatic niche information from multiple vertebrate groups including small mammals, reptiles, and birds to infer the paleoclimatic conditions present during the Late Pleistocene (∼14,500–17,000 years BP) at Talara, an asphaltic paleontological locality on the northern Peruvian coast. We created Ecological Niche Models for the nearest living relative of each fossil species identified at Talara. We then used the Mutual Ecogeographic Range method, obtaining the overlapping area between distributions for each vertebrate group (birds, reptiles, and small mammals) as well as for combinations of groups, to infer the paleoclimate at Talara and to determinate what taxonomic groups are best for reconstructing climate in this system. Our analyses indicate that conditions at Talara were slightly cooler and significantly wetter than those of the present day. Individually, different vertebrate groups provide different paleoclimatic information. Birds were found to be a poor paleoclimatic proxy. Mammals were good for inferring paleoprecipitation but not paleotemperature. Reptiles were good group for inferring paleotemperature but not paleoprecipitation. While analyzing all vertebrate groups together yields the most robust conclusions, reptiles and small mammals combined are a good proxy for inferring both paleoprecipitation and paleotemperature. Our results suggest an interstadial period that agrees with paleotemperatures inferred from isotopic and sedimentary information. Our research indicates that today, the southern portion of the Cauca biogeographic province (230 km NE from Talara) has comparable climatic conditions to Late Pleistocene Talara. Understanding how the Talara region transitioned from this biodiverse ecosystem to the hyperarid coastal desert of today could have important implications for predicting biotic response and tipping points in the context of modern climate change.

Population genomics reveals how 5 ka of human occupancy led the Lima leaf-toed gecko (Phyllodactylus sentosus) to the brink of extinction

Small species with high home fidelity, high ecological specialization or low vagility are particularly prone to suffer from habitat modification and fragmentation. The Lima leaf-toed gecko (Phyllodactylus sentosus) is a critically endangered Peruvian species that shelters mostly in pre-Incan archeological areas called huacas, where the original environmental conditions are maintained. We used genotyping by sequencing to understand the population genomic history of P. sentosus. We found low genetic diversity (He 0.0406–0.134 and nucleotide diversity 0.0812–0.145) and deviations of the observed heterozygosity relative to the expected heterozygosity in some populations (Fis − 0.0202 to 0.0187). In all analyses, a clear population structuring was observed that cannot be explained by isolation by distance alone. Also, low levels of historical gene flow were observed between most populations, which decreased as shown in contemporary migration rate analysis. Demographic inference suggests these populations experienced bottleneck events during the last 5 ka. These results indicate that habitat modification since pre-Incan civilizations severely affected these populations, which currently face even more drastic urbanization threats. Finally, our predictions show that this species could become extinct in a decade without further intervention, which calls for urgent conservation actions being undertaken.

First Insights into Population Structure and Genetic Diversity Versus Host Specificity in Trypanorhynch Tapeworms Using Multiplexed Shotgun Genotyping.

Theory predicts relaxed host specificity and high host vagility should contribute to reduced genetic structure in parasites while strict host specificity and low host vagility should increase genetic structure. Though these predictions are intuitive, they have never been explicitly tested in a population genomic framework. Trypanorhynch tapeworms, which parasitize sharks and rays (elasmobranchs) as definitive hosts, are the only order of elasmobranch tapeworms that exhibit considerable variability in their definitive host specificity. This allows for unique combinations of host use and geographic range, making trypanorhynchs ideal candidates for studying how these traits influence population-level structure and genetic diversity. Multiplexed shotgun genotyping (MSG) data sets were generated to characterize component population structure and infrapopulation diversity for a representative of each trypanorhynch suborder: the ray-hosted Rhinoptericola megacantha (Trypanobatoida) and the shark-hosted Callitetrarhynchus gracilis (Trypanoselachoida). Adults of R. megacantha are more host-specific and less broadly distributed than adults of C. gracilis, allowing correlation between these factors and genetic structure. Replicate tapeworm specimens were sequenced from the same host individual, from multiple conspecific hosts within and across geographic regions, and from multiple definitive host species. For R. megacantha, population structure coincided with geography rather than host species. For C. gracilis, limited population structure was found, suggesting a potential link between degree of host specificity and structure. Conspecific trypanorhynchs from the same host individual were found to be as, or more, genetically divergent from one another as from conspecifics from different host individuals. For both species, high levels of homozygosity and positive FIS values were documented.

Paleoclimatic Reconstruction Based on the Late Pleistocene San Josecito Cave Stratum 720 Fauna Using Fossil Mammals, Reptiles, and Birds

Advances in technology have equipped paleobiologists with new analytical tools to assess the fossil record. The functional traits of vertebrates have been used to infer paleoenvironmental conditions. In Quaternary deposits, birds are the second-most-studied group after mammals. They are considered a poor paleoambiental proxy because their high vagility and phenotypic plasticity allow them to respond more effectively to climate change. Investigating multiple groups is important, but it is not often attempted. Biogeographical and climatic niche information concerning small mammals, reptiles, and birds have been used to infer the paleoclimatic conditions present during the Late Pleistocene at San Josecito Cave (~28,000 14C years BP), Mexico. Warmer and dryer conditions are inferred with respect to the present. The use of all of the groups of small vertebrates is recommended because they represent an assemblage of species that have gone through a series of environmental filters in the past. Individually, different vertebrate groups provide different paleoclimatic information. Birds are a good proxy for inferring paleoprecipitation but not paleotemperature. Together, reptiles and small mammals are a good proxy for inferring paleoprecipitation and paleotemperature, but reptiles alone are a bad proxy, and mammals alone are a good proxy for inferring paleotemperature and precipitation. The current paleoclimatic results coupled with those of a previous vegetation structure analysis indicate the presence of non-analog paleoenvironmental conditions during the Late Pleistocene in the San Josecito Cave area. This situation would explain the presence of a disharmonious fauna and the extinction of several taxa when these conditions later disappeared and do not reappear again.

Insight into the evolutionary history ofIndoplanorbis exustus(Bulinidae: Gastropoda) at the scale of population and species

AbstractThe history of a lineage is intertwined with the history of the landscape it inhabits. Here we showcase how the geo-tectonic and climatic evolution of South Asia and surrounding landmasses have shaped the biogeographical history of Indoplanorbis exustus, a tropical Asian, freshwater snail. We amplified partial COI gene fragments from all over India and combined this with a larger dataset from South and Southeast Asia to carry out phylogenetic reconstruction, species delimitation analysis and population genetic analyses. Two nuclear genes were also amplified from a few individuals per putative species to carry out divergence dating and ancestral area reconstruction analyses. The results suggest that I. exustus dispersed out of Africa into India during the Eocene. Furthermore, molecular data suggest I. exustus is a species complex consisting of multiple putative species. Primary diversification took place in the Northern Indian plains or in Northeast India. The speciation events appear to be primarily allopatric caused by a series of aridification events starting from the late Miocene to early Pleistocene. None of the species appears to have any underlying genetic structure suggestive of high vagility. All the species underwent population fluctuations during the Pleistocene, probably driven by the Quaternary climatic fluctuations.

The roles of phenotypic plasticity and adaptation in morphology and performance of an invasive species in a novel environment

1. Species introductions provide insights into how populations respond to new environments and selection pressures through rapid adaptation and adaptive phenotypic plasticity. However, maladaptive responses are increasingly recognised to also be common in nature. The spotted‐wing drosophila, Drosophila suzukii, has rapidly invaded divergent environments providing the opportunity to examine adaptive and maladaptive phenotypic and evolutionary responses to its introduced range.2. We studied how population density in the field and wing size of individuals varied over an elevational gradient on Hawaii. We then conducted a reciprocal common garden experiment to evaluate how temperature influenced wing size and other correlates of fitness. We did this by reciprocally rearing D. suzukii collected from low and high elevations in temperatures representative of low and high elevation.3. We observed a wing size increase with elevation. Additionally, flies were more abundant at higher elevation. In the reciprocal common garden experiment, flies emerged faster in the warm, low‐elevation temperature and developed larger wings in the cool, high‐elevation temperature. Emergence of flies from high‐ and low‐elevation sites showed a pattern suggesting maladaptation to the temperature representing their home environment.4. We suggest that opposing selection pressures, the high vagility of flies, and extreme plasticity in body size constrain adaptation to temperature along an elevational gradient. Although successful invasive species such as D. suzukii often exhibit local adaptation, this research demonstrates that invasive species can be successful even without such adaptation.

Persistent panmixia despite extreme habitat loss and population decline in the threatened tricolored blackbird (Agelaius tricolor).

Habitat loss and alteration has driven many species into decline, often to the point of requiring protection and intervention to avert extinction. Genomic data provide the opportunity to inform conservation and recovery efforts with details about vital evolutionary processes with a resolution far beyond that of traditional genetic approaches. The tricolored blackbird (Agelaius tricolor) has suffered severe losses during the previous century largely due to anthropogenic impacts on their habitat. Using a dataset composed of a whole genome paired with reduced representation libraries (RAD‐Seq) from samples collected across the species’ range, we find evidence for panmixia using multiple methods, including PCA (no geographic clustering), admixture analyses (ADMIXTURE and TESS conclude K = 1), and comparisons of genetic differentiation (average FST = 0.029). Demographic modeling approaches recovered an ancient decline that had a strong impact on genetic diversity but did not detect any effect from the known recent decline. We also did not detect any evidence for selection, and hence adaptive variation, at any site, either geographic or genomic. These results indicate that species continues to have high vagility across its range despite population decline and habitat loss and should be managed as a single unit.

Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain.

Genetic factors are often overlooked in conservation planning, despite their importance in small isolated populations. We used mitochondrial and microsatellite markers to investigate population genetics of the adder (Vipera berus) in southern Britain, where numbers are declining. We found no evidence for loss of heterozygosity in any of the populations studied. Genetic diversity was comparable across sites, in line with published levels for mainland Europe. However, further analysis revealed a striking level of relatedness. Genetic networks constructed from inferred first degree relationships suggested a high proportion of individuals to be related at a level equivalent to that of half-siblings, with rare inferred full-sib dyads. These patterns of relatedness can be attributed to the high philopatry and low vagility of adders, which creates high local relatedness, in combination with the polyandrous breeding system in the adder, which may offset the risk of inbreeding in closed populations. We suggest that reliance on standard genetic indicators of inbreeding and diversity may underestimate demographic and genetic factors that make adder populations vulnerable to extirpation. We stress the importance of an integrated genetic and demographic approach in the conservation of adders, and other taxa of similar ecology.

Metapopulation dynamics and foraging plasticity in a highly vagile seabird, the southern rockhopper penguin.

Population connectivity is driven by individual dispersal potential and modulated by natal philopatry. In seabirds, high vagility facilitates dispersal yet philopatry is also common, with foraging area overlap often correlated with population connectivity. We assess the interplay between these processes by studying past and current connectivity and foraging niche overlap among southern rockhopper penguin colonies of the coast of southern South America using genomic and stable isotope analyses. We found two distinct genetic clusters and detected low admixture between northern and southern colonies. Stable isotope analysis indicated niche variability between colonies, with Malvinas/Falklands colonies encompassing the species entire isotopic foraging niche, while the remaining colonies had smaller, nonoverlapping niches. A recently founded colony in continental Patagonia differed in isotopic niche width and position with Malvinas/Falklands colonies, its genetically identified founder population, suggesting the exploitation of novel foraging areas and/or prey items. Additionally, dispersing individuals found dead across the Patagonian shore in an unusual mortality event were also assigned to the northern cluster, suggesting northern individuals reach southern localities, but do not breed in these colonies. Facilitated by variability in foraging strategies, and especially during unfavorable conditions, the number of dispersing individuals may increase and enhance the probability of founding new colonies. Metapopulation demographic dynamics in seabirds should account for interannual variability in dispersal behavior and pay special attention to extreme climatic events, classically related to negative effects on population trends.

Migratory Flyways May Affect Population Structure in Double‐Crested Cormorants

ABSTRACTDouble‐crested cormorants (Phalacrocorax auritus) recovered from a demographic bottleneck so well that they are now considered a nuisance species at breeding and wintering grounds across the United States and Canada. Management of this species could be improved by refining genetic population boundaries and assigning individuals to their natal population. Further, recent radio‐telemetry data suggest the existence of Interior and Atlantic migratory flyways, which could reduce gene flow and result in substantial genetic isolation. In this study, we used 1,784 individuals collected across the eastern United States, a large panel of microsatellite markers developed for this species, and individuals banded as chicks and recaptured as adults to explore the effects of migratory flyways on population structure, quantify the genetic effects of demographic bottlenecks, and determine whether individuals could be assigned to their natal population based on genotype. We found evidence for genetic population division only along migratory flyways, no evidence of genetic bottlenecks, and mixed effectiveness of assignment tests. Our population structure findings suggest that gene flow is high across large scales; for example, individuals from New York, Minnesota, and Alabama are all in panmixia. We also found that traditional subspecies ranges may not be valid because >1 subspecies was present in single genetic populations. The lack of evidence for genetic bottlenecks also likely underscores the vagility of this species, suggesting that even during demographic bottlenecks, populations were not isolated from allelic exchange. Finally, the failure of assignment tests to consistently perform is likely due in part to imperfect a priori sampling of Atlantic and Interior chicks and the high vagility of adults. We conclude that the demographic bottleneck is not likely to have reduced genetic diversity, and that assignment tests remain unreliable for this species. We recommend double‐crested cormorants be managed by flyway. Further development of genomic resources in this species could improve population subdivision resolution, improve assignment tests, and reveal further information on demographic histories. © 2020 The Wildlife Society.

Distribution and diversity of Papilionidae and Pieridae (Lepidoptera: Papilionoidea) in Loxicha Region, Oaxaca, Mexico

Introduction: A reliable list of species and the analysis of diversity patterns of hyperdiverse taxa, like butterflies, are fundamental for monitoring and managing biological resources. Oaxaca is one of the most diverse states in Mexico for many groups including Lepidoptera and most of its diversity is unknown. Objective: to estimate and describe the species richness and diversity of Papilionidae and Pieridae along an altitudinal gradient and five vegetation types in the Loxicha Region, Oaxaca, Sierra Madre del Sur. Methods: Sampling effort comprised 222 collecting days during a period of seven years. We estimated the alpha diversity for 17 sites within an elevational gradient from 80 to 2 850 m, with five vegetation types: tropical deciduous forest (TDF), tropical sub-deciduous forest (TSDF), cloud forest (low and middle levels) (CF), oak-pine and cloud forest (high level) (OPCF) and oak-pine forest (OPF). Results: We obtained a list of 69 species (27 Papilionidae and 42 Pieridae), of 34 genera and five subfamilies, from literature records and fieldwork. These species are 60 % of the Pieridae and 48 % of the Papilionidae recorded for the state. The Loxicha Region has 36 % of the Pieridae and 30 % of the Papilionidae of Mexico. Both families present different species richness patterns by vegetation type. Papilionidae is richer in the TDF with 23 estimated species and most of the species of this family (84 %) occur below 500 m. Meanwhile, species richness of Pieridae has non-significant differences among vegetations types, except for OPF which has fewer species than the other types. The elevational gradient was divided into three levels (0-750, 750-1 800, 1 800-2 850 m) showing a reduction of species richness and diversity for both families at higher altitudes. Conclusions: Papilionidae species are more restricted to a vegetation type or elevational level than Pieridae species. Likely reasons are higher vagility (including migrations) and wider ecological tolerance of most Pieridae.

Diversity structure of phytoseiid mites in urban plant habitats

We founded that E. finlandicus and K. aberrans formed the nucleus of Phytoseiidae community on the plants of urbanized environment in the result of study of 93 plant species (55 species of tree-and-shrub (58.9%) and 38 species of herbaceous plants (41.1%). Our research was carried out in plantations along the main and secondary municipal highways, near residential area and industrial buildings, on private plots of the private building area, in city parks and squares of Kyiv, Uman, Brovary, and Vasylkiv (Ukraine). The peculiarities of their distribution among urban plant associations, which differ from each other by different characteristics (population, area, degree of urbanization) were determined. Both species - E. finlandicus and K. aberrans have a rather extended range of indicators of relative biotope contiguity (-0.91<Fij<0.43 and -0.93Fij<0.96) that indicated their property to inhabit large number of plants. The indicator of K. aberrans occurrence, which was the highest in the city with the smallest degree of urbanization (Vasylkiv), decreased in the city with the maximum possible degree of urbanization (Kyiv). This indicator of E. finlandicus on the contrary increased along the gradient from a smaller city to the metropolitan city. K. aberrans inhabit a large number of plant species (33 species), while preferred plants from Rosacea family. E. finlandicus dominated by number of urban plant species it inhabited (75 species, 79.78%), absolute number of individuals in collected samples of predatory mites (504), occurrences index (Is = 74.49%), and by index of Palii-Kovnatsi (Di = 51.42%). The dominance of E. finlandicus species was registered in both groups of plants. The distribution of Phytoseiidae’s was primarily connected with the possibility of their movement along the surface of the substrate. Speed of mites moving was not the same in different species and depended on their morphology and plant morphology. Both species lived and laid eggs on the underside of the leaf. K. aberrans was more commonly found near the central vein of the leaf, while E. finlandicus was observed more evenly on the leaf plate, which can be explained by it higher vagility. K. aberrans could inhabit high number on fruit varieties of plants with pubescence leaves. Morphological features of plant leaves did not affect the spread of E. finlandicus species, therefore, they could be considered more "universal". However, it reached a higher quantity on the plants with a smooth surface of a leaf plate. Certain temperature, illumination regime, air and soil humidity caused the differences in mites spreading at various habitats.

High vagility facilitates population persistence and expansion prior to the Last Glacial Maximum in an antarctic top predator: The Snow petrel (Pagodroma nivea)

AbstractAimsPleistocene glacial cycles have had profound effects on the distribution and genetic diversity of high latitude species, which can vary with species‐specific traits, such as vagility. Demographic responses of antarctic flying seabirds to the same events remain unassessed. We addressed this knowledge gap by studying the genetic population connectivity and demographic history of a flying seabird endemic to Antarctica, the Snow petrel. We hypothesize that their high vagility due to flight may represent an advantage over non‐flying seabirds in enduring past climate variation.LocationApproximately 3,000 km of coastline in East Antarctica, covering three areas in Mac. Robertson Land, Princess Elizabeth Land and Wilkes Land. An inland location was also sampled at the Prince Charles Mountains, Mac. Robertson Land.TaxonSnow petrel (Pagodroma nivea).MethodsWe sampled 93 individuals and sequenced a total of 5,412 base pairs, including two mitochondrial genes, four anonymous nuclear loci and a nuclear intron. We used frequentist and Bayesian approaches to examine population genetic structuring and an Extended Bayesian Skyline Plot method to infer the demographic history of the species in the study area. In addition, evidence of exposed bedrock during glacial periods was summarized in maps of the studied area representing potential refugia for the species.ResultsDifferentiation indexes, genetic clustering and haplotype networks suggest long‐term population connectivity for Snow petrels across the study area, with no evidence for reliction into refugia that were genetically isolated. Significantly, population expansions pre‐dated the Last Glacial Maximum (LGM), but only where there was evidence of ice‐free areas during this period.Main conclusionsThe high vagility of Snow petrels may have been advantageous for access to foraging areas and supported large populations despite the harsh conditions during the LGM. Our results highlight that species‐specific traits can exert a strong influence on demographic responses to the same environmental events.

First report of Ornithodoros peropteryx in Brazil, and the occurrence of Ornithodoros cavernicolous in the western Brazilian Amazon

More than half of the Brazilian soft ticks (Argasidae) are represented by species associated with bats. Based on a morphological and molecular approach of free-living ticks collected inside two unexplored caves in Rondônia state, western Brazilian Amazon, we report the occurrence of Ornithodoros peropteryx for the first time in Brazil. Our findings also extend the distribution of Ornithodoros cavernicolous towards western Brazilian Amazon. Additionally, our collections include previously unknown male of O. peropteryx. In both species, partial 16S rRNA mitochondrial gene sequences showed >99% of identity when compared to available conspecific data from other localities. Although more data is necessary to make a general conclusion, high vagility of hosts could be favoring low genetic structure among these ectoparasites.

Estimating capacity of managed pine forests in the southeastern U.S. to provide open pine woodland condition and gopher tortoise habitat

Pine forests managed for economic return comprise 19% of southeastern U. S. forests and can provide vegetation structure and composition necessary for many wildlife species adapted to open pine conditions. However, in the absence of frequent fire and other disturbance in southeastern pine (Pinus spp.) forests, midstory hardwoods create closed canopy conditions limiting value of pine stands for many endemic, disturbance-adapted wildlife species. Limitations of past research investigating exact mechanisms for producing and maintaining open pine conditions in managed pine systems have led to a paucity of information regarding ecoregion applications and outcomes. This study evaluated (1) to what extent managed pine stands replicate open pine structural conditions and (2) to what extent managed pine stands provide habitat for the gopher tortoise, an open pine keystone species. We used summary statistics from existing literature to identify structural metrics provided by managed loblolly pine (P. taeda) stands and compared them to disturbance-maintained open pine woodlands. We used spatially-explicit forest management simulations to determine amount and configuration of open pine woodland conditions within two large (>9000 ha), economically-feasible managed pine landscapes in the East and West Gulf Coastal Plains ecoregions. As a case study, we estimated availability and connectivity of gopher tortoise (Gopherus polyphemus) habitat, in managed pine stands of the East Gulf Coastal Plains. Pine stands planted at ≤1310 stems/ha (≤530 stems/ac) provide up to four years of “excellent” open pine condition for wildlife following commercial thinning, based on desired conditions for southern pine forests, with temporal availability depending on site quality. Mid-rotation applications of prescribed fire and selective herbicide can extend “excellent” open pine condition initiated by commercial thinning up to an additional four years. Landscape metrics indicated that, under typical management practices, open pine stands can be spatially and temporally connected to the extent necessary to facilitate among-patch movement for many open pine-adapted species of conservation concern. Our landscape analyses indicated tortoises using primarily regenerating and thinned stands potentially can have a relatively even flow of suitable habitat conditions and opportunities to move to adjacent or nearby open stands when currently-occupied stands reach canopy closure. The disturbance regimes inherent in pine plantation management create diverse landscapes that conserve plant and wildlife biodiversity while meeting economic objectives. Therefore, pine plantations may complement current conservation efforts for open pine woodland species dependent on or tolerant of large-scale disturbance and shifting habitat conditions while offering refuge for high vagility species.

Local-scale determinants of arboreal spider beta diversity in a temperate forest: roles of tree architecture, spatial distance, and dispersal capacity.

Spiders are a functionally important taxon in forest ecosystems, but the determinants of arboreal spider beta diversity are poorly understood at the local scale. We examined spider assemblages in 324 European beech (Fagus sylvatica) trees of varying sizes across three forest stands in Würzburg (Germany) to disentangle the roles of tree architecture, spatial distance, and dispersal capacity on spider turnover across individual trees. A large proportion of tree pairs (66%) showed higher compositional dissimilarity in spider assemblages than expected by chance, suggesting prominent roles of habitat specialization and/or dispersal limitation. Trees with higher dissimilarity in DBH and canopy volume, and to a lesser extent in foliage cover, supported more dissimilar spider assemblages, suggesting that tree architecture comprised a relevant environmental gradient of sorting spider species. Variation partitioning revealed that 28.4% of the variation in beta diversity was jointly explained by tree architecture, spatial distance (measured by principal coordinates of neighbor matrices) and dispersal capacity (quantified by ballooning propensity). Among these, dispersal capacity accounted for a comparable proportion as spatial distance did (6.8% vs. 5.9%). Beta diversity did not significantly differ between high- and low-vagility groups, but beta diversity in species with high vagility was more strongly determined by spatially structured environmental variation. Altogether, both niche specialization, along the environmental gradient defined by tree architecture, and dispersal limitation are responsible for structuring arboreal spider assemblages. High dispersal capacity of spiders appears to reinforce the role of niche-related processes.

Low Levels of Population Structure among Geographically Distant Populations of Pteropus vampyrus (Chiroptera: Pteropodidae)

Pteropus vampyrus, the largest bat in the world, has a broad geographic range covering much of Southeast Asia. The wide distribution of P. vampyrus and its ability to cross oceanic expanses makes management of this threatened species an international concern. Pteropus vampyrus is an essential seed disperser and pollinator of rain forest trees, many of which are ecologically and economically important. Understanding population dynamics of P. vampyrus is thus critical to addressing conservation issues and global health concerns. We used phylogenetic inference and population genetic indices to infer past gene flow between populations of P. vampyrus throughout most of the species' range. Population genetic parameters indicate low levels of nucleotide variability with high haplotype diversity across its range, implying a demographic scenario of recent population expansion after a bottleneck. Subspecies were not found to be monophyletic from the genetic data, which may reflect some level of genetic variation on even shallower time scales. The low level of population genetic structure throughout the species range is not necessarily surprising given its high vagility and seasonal migratory behavior. However, it cannot be entirely excluded that these results may reflect historical connectivity or lineage sorting issues rather than more recent persistent gene flow. These findings highlight the need for international cooperation and monitoring to ensure persistence of populations and to create a species management plan that can protect the species throughout its range. Increased genetic sampling is needed to ascertain P. vampyrus' commonly used dispersal routes and to assess the possibility of asymmetric gene flow among populations.

Under‐representation of avian studies in landscape genetics

Landscape genetics is a rapidly growing discipline that examines how heterogeneous landscapes and other environmental factors influence population genetic variation. We conducted a systematic review of the landscape genetic literature which demonstrates that birds are severely under‐represented relative to their species diversity and general publication prevalence. Most avian studies were on species that have relatively low dispersal ability, and we suggest that this reflects an assumed high vagility of birds that precludes spatial genetic variation relatable to landscape heterogeneity. However, spatial genetic variation exists in several bird species with very high dispersal ability, but this has not been considered in the context of landscape features. Genetic patterns may also relate to landscape due to breeding habitat selection and territorial behaviour, despite the fact that species may be able to move throughout different landscape elements with minimal movement costs. Habitat loss and fragmentation are continuing globally and are strongly related to declines in bird populations. Landscape genetic studies provide a means to understand, predict and mitigate the effects of anthropogenic landscape change on birds. This review promotes the need for landscape genetic studies of birds, such that a greater understanding of the drivers of their genetic structuring can be developed and generalizations can be made from landscape genetic studies that apply more broadly across taxa.

Divergence and gene flow in the globally distributed blue‐winged ducks

The ability to disperse over long distances can result in a high propensity for colonizing new geographic regions, including uninhabited continents, and lead to lineage diversification via allopatric speciation. However, high vagility can also result in gene flow between otherwise allopatric populations, and in some cases, parapatric or divergence‐with‐gene‐flow models might be more applicable to widely distributed lineages. Here, we use five nuclear introns and the mitochondrial control region along with Bayesian models of isolation with migration to examine divergence, gene flow, and phylogenetic relationships within a cosmopolitan lineage comprising six species, the blue‐winged ducks (genus Anas), which inhabit all continents except Antarctica. We found two primary sub‐lineages, the globally‐distributed shoveler group and the New World blue‐winged/cinnamon teal group. The blue‐winged/cinnamon sub‐lineage is composed of sister taxa from North America and South America, and taxa with parapatric distributions are characterized by low to moderate levels of gene flow. In contrast, our data support strict allopatry for most comparisons within the shovelers. However, we found evidence of gene flow from the migratory, Holarctic northern shoveler A. clypeata and the more sedentary, African Cape shoveler A. smithii into the Australasian shoveler A. rhynchotis, although we could not reject strict allopatry. Given the diverse mechanisms of speciation within this complex, the shovelers and blue‐winged/cinnamon teals can serve as an effective model system for examining how the genome diverges under different evolutionary processes and how genetic variation is partitioned among highly dispersive taxa.