High-temperature geothermal systems in China, such as those found in Tenchong and Tibet, are common. A similar system without obvious manifestations found in the Tashkorgan basin in the western Xinjiang Autonomous Region, however, was not expected. The results from borehole measurements and predictions with geothermometers, such as quartz, Na-K and Na-K-Mg, indicate that the reservoir temperature is approximately 250–260°C. Geothermal water is high in Total Dissolved Solids (>2.5g/L) and SiO2 content (>273mg/L), and the water type is Cl·SO4-Na, likely resulting from water-rock interactions in the granodiorite reservoirs. Based on isotope analysis, it appears to be recharged by local precipitation and river water. Evidence from the relationships between major ions and the Cl and molar Na/Cl ratio suggests mixing between deep geothermal water and shallow cold groundwater during the upwelling process. Mixing ratios calculated by the relationship between Cl and SiO2 show that the proportion from cold end-members are 96–99% and 40–90% for riparian zone springs and geothermal water from boreholes, respectively. Active regional tectonic and Neo-tectonic movements in the Pamir syntax as well as radioactive elements in the granodiorite reservoir of the Himalayan stage provide basis for the high heat flow background (150–350mW/m2). NNW trending fault systems intersecting with overlying NE faults provide circulation conduits with high permeability for geothermal water.