Cacao (Theobroma cacao) is a commodity that plays an important role in supporting economic and social development. However, cacao production can also be a major contributor to carbon emissions, which has stimulated various efforts toward sustainable cacao farm management. There remains a gap in knowledge regarding the links between carbon stocks and carbon footprints, which can serve as indicators of environment “friendliness.” In this study, we investigated carbon stocks and carbon footprints in two cacao cultivation systems, agroforests and monocultural systems, and the biophysical aspects (biotic and abiotic factors) that might contribute to the variability of carbon levels. System inventories, soil samples, and farmer interviews identified the characteristics and management practices of two cacao production systems. Results show that cacao agroforests accumulated more carbon stocks than cacao monocultures, 134.4 Mg C ha−1 and 104.7 Mg C ha−1, respectively, while cacao monocultural systems had higher carbon footprints than cacao agroforests, 1914.4 kg CO2e ha−1 and 932.1 ± 251.6 kg CO2e ha−1, respectively. Canopy cover, tree density, and soil organic carbon were the biophysical aspects that showed a significantly positive correlation with carbon stock levels, while canopy cover had a significantly negative correlation with carbon footprint levels. These results suggest that cacao agroforests are more climate-friendly management systems due to their ability to maintain high carbon stock levels while producing low carbon footprints.
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