Garnet is one of the most typical minerals in skarn deposits, and its texture and composition is a proxy for the changing physicochemical conditions. Thus, mineralogical and geochemical characterization of different garnet types can provide important information on the nature and evolution of ore-forming fluids. The Beiya gold-polymetallic deposit is China’s largest skarn-type Au deposit with Au reserves of >380 t. Although several studies have addressed the skarn formation mechanism and nature of fluid evolution, a systematic study on the changes in the composition and texture of garnet from wall rocks to ore-related intrusion has not yet been attempted. In this work, we carry out a systematic investigation along a horizonal profile in the open pit of the Beiya deposit. Our results show that the garnet in the profile belongs to grossular-andradite solid solution series with all grains showing well-developed fine oscillatory zoning. The garnets are of two types: the first type (Grt I) formed within the endoskarn, is reddish to red with euhedral-subhedral megacryst structure (>10 mm) and has altered surfaces. The second type (Grt II) occur in the proximal exoskarn, is red to brown–red, euhedral-subhedral, with medium- to fine- grained structure (0.3–4 mm) and displaying oscillatory zoning. Unlike Grt I, hydrous minerals occur in the pores among Grt II garnets, such as calcite, quartz, epidote and chlorite. Also, calcite-chlorite vein, quartz vein and quartz-chalcopyrite-pyrite vein cuts the Grt II garnets. Grt I is dominantly grossular (Adr14.88-43.58Grs55.25-82.87), depleted in the large ion lithophile elements (LILE), relatively enriched in high field strength elements (HFSEs) and enriched in heavy rare earth elements (HREEs) with negative Eu anomalies. Grt II is mostly andradite (Adr62.18-98.91Grs0-36.22), depleted in the LILE and HFSE, enriched in light rare earth elements (LREEs) with slightly positive Eu anomalies. Here we selected Grt II for in-situ LA-ICP-MS U-Pb dating, since Grt I contains negligible uranium. The results yielded a lower intercept 206Pb/238U age of 35.3 ± 1.8 Ma (MSWD = 0.68, n = 23). The calculated oxygen isotopic compositions of hydrothermal fluids in equilibrium with two types of garnets range from 6.46 ‰ to 8.56 ‰ (average 7.89 ‰), which are within the range of values for magmatic fluids. We infer that the physicochemical conditions of the hydrothermal fluid changed from relatively reduced, nearly neutral, and low water/rock ratios to slightly oxidized, slightly acidic, and high water/rock ratios. The chlorine content in the fluid increased during garnet growth. The fluctuating compositions of garnets in the skarn suggest multistage ore-fluid activities and the fluid evolution provide insights into the ore-forming process.