High-field Asymmetric Waveform Ion Mobility Research Articles

Conformational Distribution of Bradykinin [bk + 2 H]2+ Revealed by Cold Ion Spectroscopy Coupled with FAIMS

We employ cold ion spectroscopy (CIS) in conjunction with high-field asymmetric waveform ion mobility spectrometry (FAIMS) to study the peptide bradykinin in its doubly protonated charge state ([bk + 2H](2+)). Using FAIMS, we partially separate the electrosprayed [bk + 2H](2+) ions into two conformational families and selectively introduce one of them at a time into a cold ion trap mass spectrometer, where we probe them by UV photofragment spectroscopy. Although the two conformational families have distinct electronic spectra, some cross-conformer contamination can be observed under certain conditions. We demonstrate that this contamination comes from isomerization of ions energized during and/or after their separation and not from incomplete separation of the initially electrosprayed conformations in the FAIMS stage. By varying the injection voltage of the ions into our mass spectrometer, we can intentionally induce isomerization to produce what seems to be a gas phase equilibrium distribution of conformers. This distribution is different from the one produced initially by electrospray, indicating that some of the conformers are kinetically trapped and may be related to conformers that are more favored in solution.

Nanospray FAIMS Fractionation Provides Significant Increases in Proteome Coverage of Unfractionated Complex Protein Digests

High-field asymmetric waveform ion mobility spectrometry (FAIMS) is an atmospheric pressure ion mobility technique that can be used to reduce sample complexity and increase dynamic range in tandem mass spectrometry experiments. FAIMS fractionates ions in the gas-phase according to characteristic differences in mobilities in electric fields of different strengths. Undesired ion species such as solvated clusters and singly charged chemical background ions can be prevented from reaching the mass analyzer, thus decreasing chemical noise. To date, there has been limited success using the commercially available Thermo Fisher FAIMS device with both standard ESI and nanoLC-MS. We have modified a Thermo Fisher electrospray source to accommodate a fused silica pulled tip capillary column for nanospray ionization, which will enable standard laboratories access to FAIMS technology. Our modified source allows easily obtainable stable spray at flow rates of 300 nL/min when coupled with FAIMS. The modified electrospray source allows the use of sheath gas, which provides a fivefold increase in signal obtained when nanoLC is coupled to FAIMS. In this work, nanoLC-FAIMS-MS and nanoLC-MS were compared by analyzing a tryptic digest of a 1:1 mixture of SILAC-labeled haploid and diploid yeast to demonstrate the performance of nanoLC-FAIMS-MS, at different compensation voltages, for post-column fractionation of complex protein digests. The effective dynamic range more than doubled when FAIMS was used. In total, 10,377 unique stripped peptides and 1649 unique proteins with SILAC ratios were identified from the combined nanoLC-FAIMS-MS experiments, compared with 6908 unique stripped peptides and 1003 unique proteins with SILAC ratios identified from the combined nanoLC-MS experiments. This work demonstrates how a commercially available FAIMS device can be combined with nanoLC to improve proteome coverage in shotgun and targeted type proteomics experiments.

Improvement of Phosphoproteome Analyses Using FAIMS and Decision Tree Fragmentation. Application to the Insulin Signaling Pathway in Drosophila melanogaster S2 Cells

This report examines the analytical benefits of high-field asymmetric waveform ion mobility spectrometry (FAIMS) coupled to liquid chromatography mass spectrometry (LC-MS) for phosphoproteomics analyses. The ability of FAIMS to separate multiply charged peptide ions from chemical interferences confers a unique advantage in phosphoproteomics by enhancing the detection of low abundance phosphopeptides. LC-FAIMS-MS experiments performed on TiO(2)-enriched tryptic digests from Drosophila melanogaster provided a 50% increase in phosphopeptide identification compared to conventional LC-MS analysis. Also, FAIMS can be used to select different population of multiply charged phosphopeptide ions prior to their activation with either collision activated dissociation (CAD) or electron transfer dissociation (ETD). Importantly, FAIMS enabled the resolution of coeluting phosphoisomers of different abundances to facilitate their unambiguous identification using conventional database search engines. The benefits of FAIMS in large-scale phosphoproteomics of D. melanogaster are further investigated using label-free quantitation to identify differentially regulated phosphoproteins in response to insulin stimulation.

Comparison of Rectangular and Bisinusoidal Waveforms in a Miniature Planar High-Field Asymmetric Waveform Ion Mobility Spectrometer

High-field asymmetric waveform ion mobility spectrometry (FAIMS) separates ions by utilizing the mobility differences of ions at high and low fields. The shape of the waveform is one of the essential features affecting the resolution, transmission, and separation of FAIMS. Due to practical circuitry advantages, sinusoidal asymmetric waveforms are typically used in FAIMS, whereas theoretical studies indicate that square asymmetric waveforms improve ion separation, resolution, and sensitivity. Results from FAIMS using square and sinusoidal waveforms are presented, and effects of the waveforms on ion separation are discussed. A FAIMS system interfaced with a quadrupole ion trap mass spectrometer was used in this study. FAIMS spectra were generated by scanning the compensation voltage (CV) while operating the mass spectrometer in total ion mode. The identification of ions was accomplished through mass spectra acquired at fixed values of ions' CVs. Square waveform evaluation was done by acquiring data at three frequencies and six duty cycles of the square waveform generator. The performance of FAIMS using square and sinusoidal waveforms at 250, 333, and 500 kHz frequencies was compared, and trends were identified. For all frequencies, the best response of FAIMS was achieved at the lower amplitudes and under the lower duty cycles of the square waveform generator. The separation of FAIMS was better at the higher frequencies. These results demonstrate the potential to incorporate square-wave FAIMS into the design of a miniature device for detection of explosives in the field. SIMION version 8.0, the ion trajectory modeling program, was utilized to optimize the performance of the miniature FAIMS cell and to validate experimental results.

Photo‐SRM: laser‐induced dissociation improves detection selectivity of selected reaction monitoring mode

Selected Reaction Monitoring (SRM) carried out on triple-quadrupole mass spectrometers coupled to liquid chromatography has been a reference method to develop quantitative analysis of small molecules in biological or environmental matrices for years and is currently emerging as a promising tool in clinical proteomic. However, sensitive assays in complex matrices are often hampered by the presence of co-eluted compounds that share redundant transitions with the target species. On-the-fly better selection of the precursor ion by high-field asymmetric waveform ion mobility spectrometry (FAIMS) or increased quadrupole resolution is one way to escape from interferences. In the present work we document the potential interest of substituting classical gas-collision activation mode by laser-induced dissociation in the visible wavelength range to improve the specificity of the fragmentation step. Optimization of the laser beam pathway across the different quadrupoles to ensure high photo-dissociation yield in Q2 without detectable fragmentation in Q1 was assessed with sucrose tagged with a push-pull chromophore. Next, the proof of concept that photo-SRM ensures more specific detection than does conventional collision-induced dissociation (CID)-based SRM was carried out with oxytocin peptide. Oxytocin was derivatized by the thiol-reactive QSY® 7 C(5)-maleimide quencher on cysteine residues to shift its absorption property into the visible range. Photo-SRM chromatograms of tagged oxytocin spiked in whole human plasma digest showed better detection specificity and sensitivity than CID, that resulted in extended calibration curve linearity. We anticipate that photo-SRM might significantly improve the limit of quantification of classical SRM-based assays targeting cysteine-containing peptides.

Separation of peptides from detergents using ion mobility spectrometry

Mass spectrometry (MS) has dramatically evolved in the last two decades and has been the driving force of the spectacular expansion of proteomics during this period. However, the very poor compatibility of MS with detergents is still a technical obstacle in some studies, in particular on membrane proteins. Indeed, the high hydrophobicity of membrane proteins necessitates the use of detergents for their extraction and solubilization. Here, we address the analytical potential of high-field asymmetric waveform ion mobility spectrometry (FAIMS) for separating peptides from detergents. The study was focused on peptides from the human integral membrane protein CD9. A tryptic peptide was mixed with the non-ionic detergents Triton X-100 or beta-D-dodecyl maltoside (DDM) as well as with the ionic detergents sodium dodecyl sulfate (SDS) or sodium deoxycholate (SDC). Although electrospray ionization (ESI) alone led to a total suppression of the peptide ion signal on mass spectra with only detection of the detergents, use of FAIMS allowed separation and clear identification of the peptide with any of the detergents studied. The detection and identification of the target compound in the presence of an excess of detergents are then feasible. FAIMS should prove especially useful in the structural and proteomic analysis of membrane proteins.

Spherical FAIMS: comparison of curved electrode geometries

High-field asymmetric waveform ion mobility spectrometry (FAIMS) can operate at atmospheric pressure to separate gas-phase ions on the basis of a difference in the mobility of an ion at high fields relative to its mobility at low field strengths. Several novel cell geometries have been proposed in addition to the commercially available planar and cylindrical designs. Nevertheless, there is still much to explore about three-dimensional (3-D) curved cell geometries (spherical and hemispherical) and comparison to two-dimensional (2-D) curved geometries (cylindrical). The geometry of a FAIMS cell is one of the essential features affecting the transmission, resolution, and resolving power of FAIMS. Electric fields in a spherical design allow advantages such as virtual potential wells that can induce atmospheric-pressure near-trapping conditions and help reduce ion losses. Curvature of electrodes enables the ions to remain focused near the gap median, which help to improve sensitivity and ion trapping at higher pressures. Here we detail the design and characterization of a novel FAIMS cell having spherical electrode geometry and compare it to hemispherical and cylindrical cells. These FAIMS cells were interfaced with a quadrupole ion trap mass spectrometer in this study. Several structural classes of common explosives were employed to evaluate the separation power of these geometries. FAIMS spectra were generated by scanning the compensation voltage (CV) while operating the mass spectrometer in total ion mode. The identification of ions was accomplished through mass spectra acquired at fixed values of CVs. The performance of FAIMS using cylindrical, hemispherical, and spherical cells was compared and trends identified. For all trials, the best transmission was obtained by the spherical FAIMS cell while hemispherical FAIMS provided the best resolution and resolving power.

Elimination of the helium requirement in high‐field asymmetric waveform ion mobility spectrometry (FAIMS): beneficial effects of decreasing the analyzer gap width on peptide analysis

Cylindrical geometry high-field asymmetric waveform ion mobility spectrometry (FAIMS) focuses and separates gas-phase ions at atmospheric pressure and room (or elevated) temperature. Addition of helium to a nitrogen-based separation medium offers significant advantages for FAIMS including improved resolution, selectivity and sensitivity. Aside from gas composition, ion transmission through FAIMS is governed by electric field strength (E/N) that is determined by the applied voltage, the analyzer gap width, atmospheric pressure and electrode temperature. In this study, the analyzer width of a cylindrical FAIMS device is varied from 2.5 to 1.25 mm to achieve average electric field strengths as high as 187.5 Townsend (Td). At these electric fields, the performance of FAIMS in an N(2) environment is dramatically improved over a commercial system that uses an analyzer width of 2.5 mm in 1:1 N(2) /He. At fields of 162 Td using electrodes at room temperature, the average effective temperature for the [M+2H](2+) ion of angiotensin II reaches 365 K. This has a dramatic impact on the curtain gas flow rate, resulting in lower optimum flows and reduced turbulence in the ion inlet. The use of narrow analyzer widths in a N(2) carrier gas offers previously unattainable baseline resolution of the [M+2H](2+) and [M+3H](3+) ions of angiotensin II. Comparisons of absolute ion current with FAIMS to conventional electrospray ionization (ESI) are as high as 77% with FAIMS versus standard ESI-MS.

Experimental and simulation research on the influence of voltage amplitude, frequency and carrier gas flow rate on the performance of FAIMS

A micro sensor chip of High-field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) was designed and fabricated by inductively coupled plasma (ICP) etching on the both sides of silicon and double silicon-glass bonding, with dimensions of 18.8 mm×12.4 mm×1.2mm. The sample ions were created at ambient pressure by VUV lamp ion source, which was equipped with a 10.6 eV photo discharge lamp (λ=116.5 nm). The 2-pentanone was adopted to illustrate the influences of high-field rectangular asymmetric waveform voltage amplitude, frequency and carrier gas flow rate on the performance of FAIMS sensor chip. The experiment results showed that with the frequency or carrier gas flow rate increasing, or voltage amplitude decreasing, the FAIMS sensitivity increases, and that the resolution decreases with the increasing of the frequency or flow rate. The FAIMS simulation results based on the SIMION software was in agreement with the experimental results. The FAIMS detection sensitivity experiment showed that the FAIMS sensor chip can detect positive and negative ions simultaneously, and has detection sensitivity as low as 0.1 ppm for acetic acid.

Study on simulation and experiment of array micro Faraday cup ion detector for FAIMS

An array micro Faraday cup ion detector for FAIMS (High-field Asymmetric Waveform Ion Mobility Spectrometry) was introduced, with which the size of the FAIMS system was reduced. With simple structure, good stability, low noise, large measurements range, this detector can work under the condition of atmospheric pressure. The array micro Faraday cup was composed of gate electrode, sensitive electrode and shielding electrode. The sensitive electrode was made of tens of crossing silicon columns with diameter of 200 μm. It was fabricated through typical MEMS technology, which was compatible completely with plane FAIMS. It was shown from FLUENT simulation result that the resistance to gas motion was low and the flow field distribution was helpful for full absorption of the ion in this array design. Through electricity simulation, the method to reduce interference on the detection signal of the micro Faraday cup was given out. Connecting with KEITHLEY 237 ampere meter, the noise level of the array micro Faraday cup was lower than 0.5 pA. The output signal of the acetone sample measured by experiment was about 210 pA. Through contrast experiment, the design parameter of the micro Faraday cup was obtained primarily. This array micro Faraday cup can meet the requirements of the FAIMS system.

Modelling a P-FAIMS with multiphysics FEM

A micro Planar high-Field Asymmetric waveform Ion Mobility Spectrometer (P-FAIMS) operating at ambient pressure and temperature has been simulated using COMSOL Multiphysics software. P-FAIMS is based on ion gas-phase separation due to the dependence of ion mobility with electric field. Ions are selected by a DC voltage characteristic of each ion kind. Physics of ion behaviour in high electric fields conditions is well known but not the chemistry behind ion reactions and kinetics. The aim of this work is the modelling of different kind of ions in a P-FAIMS having account of the main factors involved in their movement in the drift tube. Simulations of vapour phase ions of three compounds have been studied for different values of drift electric field amplitude to gas number density (E/N) ratio: protonated water clusters H+(H2O)n and \({{\rm O}_{2}^{-}({\rm H}_{2}{\rm O})_{n}}\) ions obtained in air, and a chemical warfare agent simulant DMMPH+ that emulates gas sarin. Ions were selected due to simulation needs of experimental data of the main quantities involved in the definition of ions mobilities. Results show that simulations of ions behaviour in a P-FAIMS are possible with COMSOL Multiphysics software and that the time and intensity at which ions are detected are in good agreement with experimental data from literature.

Behaviour of tetraalkylammonium ions in high‐field asymmetric waveform ion mobility spectrometry

High-field asymmetric waveform ion mobility spectrometry (FAIMS) is an ion-filtering technique recently adapted for use with liquid chromatography/mass spectrometry (LC/MS) to remove interferences during analysis of complex matrices. This is the first systematic study of a series of singly charged tetraalkylammonium ions by FAIMS-MS. The compensation voltage (CV) is the DC offset of the waveform which permits the ion to emerge from FAIMS and it was determined for each member of the series under various conditions. The electrospray ionization conditions explored included spray voltage, vaporizer temperature, and sheath and auxiliary gas pressure. The FAIMS conditions explored included carrier gas flow rate, electrode temperature and composition of the carrier gas. Optimum desolvation was achieved using sufficient carrier gas (flow rate > or = 2 L/min) to ensure stable response. Low-mass ions (m/z 100-200) are more susceptible to changes in electrode temperature and gas composition than high mass ions (m/z 200-700). As a result of this study, ions are reliably analyzed using standard FAIMS conditions (dispersion voltage -5000 V, carrier gas flow rate 3 L/min, 50% helium/50%nitrogen, inner electrode temperature 70 degrees C and outer electrode temperature 90 degrees C). Variation of FAIMS conditions may be of great use for the separation of very low mass tetraalkylammonium (TAA) ions from other TAA ions. The FAIMS conditions do not appear to have a major effect on higher mass ions.

Solvent vapor effects on planar high-field asymmetric waveform ion mobility spectrometry

The effects of various concentrations of solvent vapor (either water or methanol) added to the curtain/drift gas in a planar high-field asymmetric waveform ion mobility spectrometer (FAIMS) have been examined. Two different groups of analyte ions (the [M−H] − ions of three positional isomers of phthalic acid and the M − and [M−H] − ions of four explosives: TNT, 2,4 DNT, 2,6 DNT, and 3,4 DNT) were analyzed. Results showed that with the addition of small amounts of solvent vapor (∼1.5% water and 12.3% methanol), there were dramatic shifts to larger CV values for all ions analyzed. There were substantial benefits provided by adding solvent vapor, including dramatically increased resolving power of isomeric ions (up to ∼141). Specifically, analyte ions examined in dried nitrogen exhibited overlapping, undistinguishable CV values, but with large CV shifts afforded by addition of solvent vapor, these analyte ions were completely resolved from one another.

Separation of Ions from Volatile Organic Compounds Using High-Field Asymmetric Waveform Ion Mobility Spectrometry-Mass Spectrometer

A combination of high-field asymmetric waveform ion mobility spectrometry (FAIMS) with mass spectrometer (MS) was analyzed. FAIMS separates ions from the volatile organic compounds in the gas-phase as an ion-filter for MS. The sample ions were created at ambient pressure by ion source, which was equipped with a 10.6 eV UV discharge lamp (Å = 116.5 nm). The drift tube of FAIMS is composed of two parallel planar electrodes and the dimension is 10 mm × 8 mm × 0.5 mm. FAIMS was investigated when driven by the high-filed rectangular asymmetric waveform with the peak-to-peak voltage of 1.36 kV at the frequency of 1 MHz and the duty cycle of 30%. The acetone, the butanone, and their mixture were adopted to characterize the FAIMS-MS. The mass spectra obtained from MS illustrate that there are ion-molecular reactions between the ions and the sample neutral molecular. And the proton transfer behavior in the mixture of the acetone and the butanone is also observed. With the compensation voltage tuned from −30 V to 10 V with a step size of 0.1 V, the ion pre-separation before MS is realized.

Chemical effects in the separation process of a differential mobility/mass spectrometer system.

In differential mobility spectrometry (also referred to as high-field asymmetric waveform ion mobility spectrometry), ions are separated on the basis of the difference in their mobility under high and low electric fields. The addition of polar modifiers to the gas transporting the ions through a differential mobility spectrometer enhances the formation of clusters in a field-dependent way and thus amplifies the high- and low-field mobility difference, resulting in increased peak capacity and separation power. Observations of the increase in mobility field dependence are consistent with a cluster formation model, also referred to as the dynamic cluster-decluster model. The uniqueness of chemical interactions that occur between an ion and cluster-forming neutrals increases the selectivity of the separation, and the depression of low-field mobility relative to high-field mobility increases the compensation voltage and peak capacity. The effect of a polar modifier on the peak capacity across a broad range of chemicals has been investigated. We discuss the theoretical underpinnings which explain the observed effects. In contrast to the result with a polar modifier, we find that using mixtures of inert gases as the transport gas improves the resolution by reducing the peak width but has very little effect on the peak capacity or selectivity. The inert gas helium does not cluster and thus does not reduce low-field mobility relative to high-field mobility. The observed changes in the differential mobility alpha parameter exhibited by different classes of compounds when the transport gas contains a polar modifier or has a significant fraction of inert gas can be explained on the basis of the physical mechanisms involved in the separation processes.

Design and evaluation of a novel hemispherical FAIMS cell

High-field asymmetric-waveform ion mobility spectrometry (FAIMS) is a rapidly growing gas-phase separation technique with a wide variety of applications. The geometry of the FAIMS cell influences ion transmission and resolution. Commercial FAIMS systems employ planar or cylindrical cell geometries. A spherical or hemispherical FAIMS cell would allow ions to travel equal path lengths through the FAIMS device while minimizing diffusional losses, improving ion resolution without sacrificing ion transmission. Here we detail the development of a novel hemispherical FAIMS cell and demonstrate the separation of a mixture of trinitrotoluene (TNT) and 3,4-dinitrotoluene (3,4-DNT). The resolution between TNT and 3,4-DNT using the hemispherical FAIMS cell is improved over that achieved with a commercial cylindrical cell while maintaining equivalent ion transmission. The novel hemispherical FAIMS cell provides improved resolution and resolving powers when compared to a commercially available cell.

Online nanoelectrospray/high‐field asymmetric waveform ion mobility spectrometry as a potential tool for discovery pharmaceutical bioanalysis

Nanoelectrospray ionization (nESI) coupled online with high-field asymmetric waveform ion mobility spectrometry (FAIMS) for small molecule analysis in a discovery pharmaceutical setting was examined. A conventional capillary pump, autosampler and nESI source were used to introduce samples directly into the FAIMS device. The FAIMS device was used to separate gas-phase ions on a timescale that was compatible with the mass spectrometer. The capability of the nESI-FAIMS combination to efficiently remove metabolite interferences from the parent drug, and reduce ion suppression effects, was demonstrated. On average, 85% of the signal intensity obtained from a neat sample was preserved in the extracted plasma samples. Standard curves were prepared for several compounds. Linearity was obtained over approximately 3 to 4 orders of magnitude. Comparison of results from nESI-FAIMS with those from conventional LC/MS for a mouse pharmacokinetic study yielded concentration values differing by no more than 30%.

Ion Peak Narrowing by Applying Additional AC Voltage (Ripple Voltage) to FAIMS Extractor Electrode

The use of a non-uniform electric field in a high-field asymmetric waveform ion mobility spectrometry (FAIMS) analyzer increases sensitivity but decreases resolution. The application of an additional AC voltage to the extractor electrode ("ripple" voltage, U(ripple)) can overcome this effect, which decreases the FAIMS peak width. In this approach, the diffusion ion loss remains minimal in the non-uniform electric field in the cylindrical part of the device, and all ion losses under U(ripple) occur in a short portion of their path. Application of the ripple voltage to the extractor electrode is twice as efficient as the applying of U(ripple) along the total length of the device.

High-Field Asymmetric Waveform Ion Mobility Spectrometry for Determining the Location of In-Source Collision-Induced Dissociation in Electrospray Ionization Mass Spectrometry

The understanding and control of the in-source collision-induced dissociation (CID) of analytes is important for the accurate LC-MS/MS quantitation of drugs and metabolites in biological samples. Accordingly, it was of interest to us to establish whether such in-source CID takes place after and/or before the orifice of an electrospray ionization (ESI) mass spectrometer. A high-field asymmetric waveform ion mobility spectrometry (FAIMS) system that is physically located between the sprayer and the orifice of a mass spectrometer can serve as an ion filter to control ions entering the orifice of the mass spectrometer. In such a configuration, FAIMS could conceivably be used to determine if the in-source CID of an analyte occurs after and/or before the mass spectrometer orifice. We demonstrated this capability of FAIMS using ifetroban acylglucuronide metabolite as a model compound. Under the conditions used, the results showed that the in-source CID conversion of the acylglucuronide metabolite to its parent drug ifetroban occurred almost entirely after the orifice of the mass spectrometer, with the conversion upstream of the orifice accounting for only 5.6% of the conversion. Under the circumstance, the term "post-orifice CID" rather than "in-source CID" may be more appropriate in describing such a dissociation occurring in the front end of a mass spectrometer.

Validated quantitation method for a peptide in rat serum using liquid chromatography/high‐field asymmetric waveform ion mobility spectrometry

The analysis of peptides presents serious challenges for bioanalytical scientists including low total ion current and non-selective fragmentation during tandem mass spectrometry (MS/MS). During method validation of a peptide in rat serum matrix some interferences could not be easily removed and thus prevented accurate and precise measurement. These problems associated with peptide quantitation were resolved by using FAIMS (high-Field Asymmetric waveform Ion Mobility Spectrometry). This selectivity-enhancing technique filters out matrix interferences, and the resulting pseudo-selected reaction monitoring (pseudo-SRM) chromatograms were nearly free from interferences. Control blank matrix samples contained an acceptable level of interference (only 7% signal as compared to the lower level of quantitation). Chromatographic peaks were easily, accurately and precisely integrated resulting in a validated liquid chromatography (LC)/FAIMS-MS/MS method for the analysis of a peptide drug in rat serum according to United States Food and Drug Administration (US FDA) bioanalytical guidelines. These results confirm that new selectivity-enhancing technologies aid the pharmaceutical industry in reliably producing acceptable pharmacokinetic data.