In this paper, we investigate the different parameters that affect the distribution of the transmembrane potential of cells brought into contact before electrofusion in a miniaturized fluidic device. In particular, we discuss the deviation of the effective transmembrane voltage compared to the one predicted by Schwan’s law. The application of electric field pulses to biological cells induces a transmembrane potential which leads to cell permeabilization. Electrofusion occurs when several cells are brought into contact while they are electropermeabilized. Nevertheless, we show that in this case, the mutual presence of cells interferes on Schwan’s equation. Consequently, the transmembrane voltage at the cell contacting point is drastically reduced, which is not favorable for an electrofusion in smooth conditions, as the applied voltage needs to be increased to compensate this phenomenon. We show that the introduction of polymer obstacles reverses this trend, as the high electric field region is focused on the fusion zone. To confirm the theory we developed, quantitative biological experiments are presented in which murine melanoma cells were paired and fused in both conditions (with and without obstacles).