The mainstays of therapy of familial dyslipoproteinemia (FDB) are diet and long-term niacin or fibrate therapy. Statins are progressively recognized as accepted alternatives for FDB. We hereby describe the case of a 32-year-old obese man with treated panhypopituitarism and FDB, whose hyperlipidemia improved significantly on atorvastatin therapy. In this patient, we also noted a marked discrepancy between the serum high-density lipoprotein cholesterol (HDL-C) and apolipoprotein (apo-) AI levels, with HDL-C being disproportionately low in comparison to the corresponding apo-AI values. Although atorvastatin therapy resulted in a significant improvement of lipid metabolism parameters within 8 weeks, the aforementioned discrepancy between HDL-C and apo-AI levels persisted. This case buttresses the effectiveness of atorvastatin therapy in FDB, and highlights the occurrence of discrepancy between HDL-C and measured apo-AI levels in rare cases of dyslipidemia. We speculate that the latter phenomenon may be caused by allelic variation(s) in any of three genes: apo-AI, apo-CIII, and apo-AIV.