Heterotrophic Fraction Research Articles

Microbial community shifts induced by plastic and zinc as substitutes of tire abrasion

Aquatic environments serve as a sink for anthropogenic discharges. A significant part of the discharge is tire wear, which is increasingly being released into the environment, causing environmental disasters due to their longevity and the large number of pollutants they contain. Main components of tires are plastic and zinc, which therefore can be used as substitutes for tire abrasion to study the effect on microbial life. We investigate environmentally realistic concentrations of plastic and zinc on a freshwater microeukaryotic community using high-throughput sequencing of the 18S V9 region over a 14-day exposure period. Apart from a generally unchanged diversity upon exposure to zinc and nanoplastics, a change in community structure due to zinc is evident, but not due to nanoplastics. Evidently, nanoplastic particles hardly affect the community, but zinc exposure results in drastic functional abundance shifts concerning the trophic mode. Phototrophic microorganisms were almost completely diminished initially, but photosynthesis recovered. However, the dominant taxa performing photosynthesis changed from bacillariophytes to chlorophytes. While phototrophic organisms are decreasing in the presence of zinc, the mixotrophic fraction initially benefitted and the heterotrophic fraction were benefitting throughout the exposure period. In contrast to lasting changes in taxon composition, the functional community composition is initially strongly imbalanced after application of zinc but returns to the original state.

Interaction between CO2-consuming autotrophy and CO2-producing heterotrophy in non-axenic phototrophic biofilms.

As the effects of climate change become increasingly evident, the need for effective CO2 management is clear. Microalgae are well-suited for CO2 sequestration, given their ability to rapidly uptake and fix CO2. They also readily assimilate inorganic nutrients and produce a biomass with inherent commercial value, leading to a paradigm in which CO2-sequestration, enhanced wastewater treatment, and biomass generation could be effectively combined. Natural non-axenic phototrophic cultures comprising both autotrophic and heterotrophic fractions are particularly attractive in this endeavour, given their increased robustness and innate O2-CO2 exchange. In this study, the interplay between CO2-consuming autotrophy and CO2-producing heterotrophy in a non-axenic phototrophic biofilm was examined. When the biofilm was cultivated under autotrophic conditions (i.e. no organic carbon), it grew autotrophically and exhibited CO2 uptake. After amending its growth medium with organic carbon (0.25 g/L glucose and 0.28 g/L sodium acetate), the biofilm rapidly toggled from net-autotrophic to net-heterotrophic growth, reaching a CO2 production rate of 60 μmol/h after 31 hours. When the organic carbon sources were provided at a lower concentration (0.125 g/L glucose and 0.14 g/L sodium acetate), the biofilm exhibited distinct, longitudinally discrete regions of heterotrophic and autotrophic metabolism in the proximal and distal halves of the biofilm respectively, within 4 hours of carbon amendment. Interestingly, this upstream and downstream partitioning of heterotrophic and autotrophic metabolism appeared to be reversible, as the position of these regions began to flip once the direction of medium flow (and hence nutrient availability) was reversed. The insight generated here can inform new and important research questions and contribute to efforts aimed at scaling and industrializing algal growth systems, where the ability to understand, predict, and optimize biofilm growth and activity is critical.

New findings on the effect of glyphosate on autotrophic and heterotrophic picoplankton structure: A microcosm approach

Massive use of glyphosate-based herbicides in agricultural activities has led to the appearance of this herbicide in freshwater systems, which represents a potential threat to these systems and their communities. These herbicides can affect autotrophic and heterotrophic picoplankton abundance. However, little is known about glyphosate impact on the whole structure of these assemblages. Herein, we used an 8-day long microcosm approach under indoor controlled conditions to analyze changes in the structure of picoplankton exposed to a single pulse of glyphosate. The analyzed picoplankton correspond to two outdoor ponds with contrasting states: “clear” (chlorophyll-a = 3.48 μg L−1± 1.15; nephelometric turbidity, NTU = 1) and “turbid” (chlorophyll-a = 105.96 μg L−1 ± 15.3; NTU = 48). We evaluated herbicide impact on different picoplankton cytometric populations and further explored changes in bacterial dominant operational taxonomic units (OTUs) fingerprinting. We observed that glyphosate induced a drastic decrease in the abundance of phycocyanin-rich picocyanobacteria. Particularly, in the turbid system this effect resulted in an 85 % decrease in the abundance of the whole autotrophic picoplankton. Glyphosate also changed the structure of the heterotrophic fraction by means of changing bacterial dominant OTUs fingerprinting patterns in both systems and by shifting the relative abundances of cytometric groups in the clear scenario. These results demonstrate that upon glyphosate exposure picoplanktonic fractions face not only the already reported changes in abundance, but also alterations in the composition of cytometric groups and of bacterial dominant operational taxonomic units. This research provides suitable and still little explored tools to analyze agrochemical effects on picoplanktonic communities.

Comparative assessment of endocrine disrupting compounds removal in heterotrophic and enriched nitrifying biomass

Despite the number of studies that have investigated the fate of endocrine disrupting compounds (EDCs), to date results are still contradictory and more research is required to evaluate the contribution of the microbial communities present in different engineered treatment systems. Thus, autotrophic and heterotrophic types of biomass were here compared in terms of efficiency in the removal of estrone (E1), 17β-estradiol (E2), estriol (E3), 17α-ethynilestradiol (EE2) and bisphenol A (BPA). Experiments were performed with enriched nitrifying activated sludge (NAS) and enriched ammonia oxidizing bacteria (AOB) sludge cultivated at lab-scale, as well as with conventional activated sludge (CAS) from a full-scale wastewater treatment plant. Both enriched NAS and AOB demonstrated a negligible degrading capacity. In both cases, the studied EDCs exhibited low removals (<14%) and showed no correlation with the increasing nitrification rates contradicting some of the hypothesis present in literature. Contrariwise, the biodegradation capabilities of the heterotrophic fraction of CAS were highlighted. E2 and E3 were removed by up to 100% and 78%, respectively. E1 was found to be the main transformation product of E2 (almost quantitative oxidation) and it was also highly eliminated. Finally, EE2 and BPA were more persistent biologically with removals ranging from 10% to 39%. For these two compounds similar removals were obtained during experiments with heat-inactivated biomass suggesting that sorption could be a relevant route of elimination.

Dietary and seasonal variability in trophic relations at the base of the North Sea pelagic food web revealed by stable isotope and fatty acid analysis

A two-dimensional biomarker approach including fatty acids and stable isotopes of seston and copepods was applied to examine how the variability at the base of the food web affects trophic interactions between primary producers and copepod consumers over a sampling period of two years. We investigated how the composition of the seston affected feeding behaviour by analysing the fatty acid and stable isotope signals of the copepods Calanus helgolandicus, Acartia spp., Centropages spp. and Temora longicornis at Helgoland Roads, North Sea. Our results indicate that the relative contributions of autotrophic and heterotrophic fractions in the seston determined the stable isotope signal of the seston and hence the δ15N of copepods. Our findings show that the combination of stable isotope and fatty acid analyses provides an ideal tool to address the complexity of trophic relations in planktonic food-webs and to define relative trophic position and feeding preferences of e.g. copepods. Defining accurate baselines from bulk seston samples containing a mixture of auto- and heterotroph protist communities still remains a challenge when defining lower food-web dynamics in natural plankton communities.

The importance of herbivory by protists in lakes of a tropical floodplain system

Inland aquatic ecosystems play a critical role in the global carbon cycle, processing a great fraction of the organic matter coming from terrestrial ecosystems, and the microbial food web is crucial in this process. Thus, we aimed to evaluate whether the food resource of planktonic protozoa comes mainly from small primary producers or heterotrophic bacteria in tropical shallows lakes, assuming the hypothesis that, in general, picocyanobacteria would be the main food resource for protists. We also expected that the autotrophic fraction would be mainly related to protists at the surface of the environments, while the heterotrophic fraction would be more important at the lower strata of the water column. We performed size-fractionation experiments to evaluate the effects of predation of protists on heterotrophic bacteria and picocyanobacteria. We also sampled planktonic organisms at the subsurface and bottom of 20 lakes in a Neotropical floodplain. We found an herbivory preference of heterotrophic flagellates, while ciliates seem to exert a stronger impact on heterotrophic bacteria. We also found no relationship between heterotrophic bacteria and protists in the field data, whereas positive relationships between picocyanobacteria and protists were observed in environments where there was sunlight. Thus, both heterotrophic bacteria and picocyanobacteria were important components in the food webs of tropical shallow lakes. Moreover, the trophic cascade caused by zooplankton predation suggests that protists are efficient in transferring the energy from the base of microbial food webs to higher trophic levels.

Discovery of a Katablepharis sp. in the Columbia River estuary that is abundant during the spring and bears a unique large ribosomal subunit sequence element

Heterotrophic protists play significant roles in pelagic food webs as bacterivorous and herbivorous consumers. However, heterotrophic protists—unlike autotrophic ones—are often difficult to track since they tend to lack features such as photosynthetic pigments that allow for remote sensing or for bulk characterization. Difficulty in the identification of heterotrophic protists has often resulted in lumping them into broad groups, but there is a strong need to develop methods that increase the spatial and temporal resolution of observations applied to particular organisms in order to discover the drivers of population structure and ecological function. In surveys of small subunit rRNA, gene (SSU) sequences of microbial eukaryotes from the Columbia River to the Pacific Ocean, the heterotrophic flagellate Katablepharis sp. were found to dominate protist assemblages (including autotrophic and heterotrophic fractions) in the spring, prior to the freshet. We discovered a 332 base pair unique sequence element (USE) insertion in the large subunit rRNA gene (28S) that is not present in other katablepharids or in any other eukaryote. Using this USE, we were able to detect Katablepharis within mixed assemblages in river, estuarine, and oceanic samples and determine spatial and temporal patterns in absolute abundance through quantitative PCR and fluorescence in situ hybridization. Given their high abundance and repeatable temporal patterns of occurrence, we hypothesize that the Columbia River Estuary Katablepharis (Katablepharis CRE) plays an important role in estuarine biogeochemical and ecosystem function.

Effects of nitrogen and phosphorus on the abundance and cell size of planktonic nanoflagellate communities

AIM: We experimentally investigated the effects of nutrients (Nitrogen and Phosphorus) enrichment on the density, biomass, and cell size of pigmented and heterotrophic plankton nanoflagellates communities. METHODS: The experiment was done in mesocosms in a tropical reservoir during a 19-day period. Four different treatments were carried out: Control (non-nutrient addition - C), phosphorus additions (P), nitrogen addition (N) and phosphorus + nitrogen addition (N + P). Each treatment was performed in triplicate, sorted randomly, thus giving a total of 12 experimental carboys, which were placed transversely in the middle of the reservoir. RESULTS: In general, pigmented and heterotrophic nanoflagellates fractions responded to nutrient addition, increasing densities and biomass values at the fertilized treatments. Opposed to expected, enriched treatments resulted in a slight decrease in mean cell size of the pigmented fraction. Moreover, in nutrient-rich treatments, pigmented nanoflagellates had higher relative abundance than in the control. CONCLUSIONS: Our results indicate that: i) the density and biomass of nanoflagellates responded to the nutrient enrichment, mainly when N and P were added together; ii) the pigmented and heterotrophic fractions showed distinct time responses to fertilization; iii) the growth of nanoflagellate community seems to be co-limited by N and P; iv) the nutrient enrichment led to a greater pigmented than heterotrophic fraction contribution; and v) among the analyzed variables, nanoflagellate densities seem to be more sensitive to changes in nutrient availability than biomass or mean cell size.

Influence of underwater light climate on periphyton and phytoplankton communities in shallow lakes from the Pampa plain (Argentina) with contrasting steady states

Shallow lakes from the Pampa plain (Argentina) are subjected to the impact of different human activities, and as a consequence, most of them are in a turbid state. Three types of shallow lakes have been described in this region: clear-vegetated, phytoplanktonturbid and inorganic-turbid. We analysed the periphyton and phytoplankton structure in five selected shallow lakes with contrasting optical characteristics. In the case of periphyton, we studied the variation in depth. Pigment compositions of both algal communities were analysed by means of high-performance liquid chromatography. Additionally, we studied the taxonomic algal composition of both communities and the mass variables of periphyton. We observed a general decreasing pattern in the mean values of periphytic abundance with depth, and stratification in periphyton was generally consistent with the vertical profiles of pigments. Relationships between cell counts and pigments also suggested changes in the intracellular pigment concentration due to photoacclimation. In clear lakes, surface periphytic communities were co-dominated by chlorophytes and diatoms. In turbid lakes the surface assemblages were mainly represented by diatoms and the relative contribution of cyanobacteria increased with depth. The interaction between light and nutrients in different turbid scenarios may explain the patterns observed in the development of the periphytic community. We observed lower periphyton accrual in lakes that presented boundary values in the restrictions of either nutrients or light availability. In phytoplanktonturbid lakes, periphyton exhibited a considerable growth due to the rich nutrient conditions, but the community was dominated by the heterotrophic fraction and we also found algal groups well adapted to light limitation.

Microbial processes in a high-latitude fjord (Kongsfjorden, Svalbard): II. Ciliates and dinoflagellates

The composition and ecological role of ciliates and dinoflagellates were investigated at one station in Kongsfjorden, Svalbard, during six consecutive field cam- paigns between March and December 2006. Total ciliate and dinoflagellate abundance mirrored the seasonal progression of phytoplankton, peaking with 5.8 9 10 4 cells l -1 in April at an average chlorophyll a concentration of 10 l gl -1 . Dinoflagellates were more abundant than ciliates, dominated by small athecates. Among ciliates, aloricate oligotrichs dominated the assemblage. A large fraction ((60%) of cil- iates and dinoflagellates contained chloroplasts in spring and summer. The biomass of the purely heterotrophic fraction of the ciliate and dinoflagellate community (protozooplankton) was with 14 l gCl -1 highest in conjunction with the phytoplankton spring bloom in April. Growth experiments revealed similar specific growth rates for heterotrophic cil- iates and dinoflagellates (\0-0.8 d -1 ). Food availability may have controlled the protozooplankton assemblage in winter, while copepods may have exerted a strong control during the post-bloom period. Calculations of the potential grazing rates of the protozooplankton indicated its ability to control or heavily impact the phytoplankton stocks at most times. The results show that ciliates and dinoflagellates were an important component of the pelagic food web in Kongs- fjorden and need to be taken into account when discussing the fate of phytoplankton and biogeochemical cycling in Arctic marine ecosystems.

Multiyear heterotrophic soil respiration: Evaluation of a coupled CO 2 transport and carbon turnover model

Modelling of soil respiration plays an important role in the prediction of climate change. Soil respiration is usually divided in a fraction originating from root respiration and a heterotrophic fraction originating from microbial decomposition of soil organic carbon. This paper reports on the coupling of an one-dimensional water, heat and CO 2 flux model (SOILCO2) with a pool concept of carbon turnover (RothC) for the prediction of soil heterotrophic respiration. In order to test this coupled model, it was applied to a bare soil experimental plot located in Bornim, Germany. Soil temperature and soil water content measurements were used for comparison with the respective model predictions. An 8 years data set of CO 2 efflux measurements, covering a broad range of atmospheric conditions, was used to evaluate the model. In a first step we quantified the improvement of the CO 2 efflux prediction due to the coupling of the flux model with a pool concept of carbon turnover. The humus pool decomposition rate constant and its soil water content dependent reduction were derived from the first 5 years of CO 2 efflux measurements using inverse modelling. The following 3 years of measurements were used to validate the model. The overall model performance of CO 2 efflux predictions was acceptable with the measured and simulated mean daily respiration being 0.861 and 0.868 g C m −2 d −1, respectively, and a mean absolute difference between modelled and measured rates of 0.21 g C m −2 d −1. The inverse estimation of the humus decomposition rate constant resulted in a value of 0.04 year −1, which is higher than the default value in RothC. This is attributed to the agricultural practice during the experiment.

Experimental Analysis of Grazing by the Mayfly Meridialaris chiloeensis on Different Successional Stages of Stream Periphyton

AbstractIn this study we determined grazing effects of the South Andean endemic mayfly Meridialaris chiloeensis on periphyton at different stages of successional development. Grazing effects were studied through a two‐factor experimental design (colonization stages X grazer density) in a stream‐side channel in spring and winter. Our results showed an absence of proportionality between grazer density and periphyton decline in response to grazers at low and intermediate levels of periphytic biomass; however, when periphyton biomass was high a direct inverse relationship was observed between post‐grazing biomass and grazer density. The relationship between periphytic algae (chlorophyll a concentration) and periphyton (total periphytic ash‐free dry mass) (C/OM index) was used as an estimation of the autotrophic fraction in the total periphyton matrix. Grazing did not alter the C/OM index indicating that both autotrophic and heterotrophic fractions of the periphyton components were reduced in the same proportion. Ordination of samples using the relative abundance of diatom species showed that herbivore effect was less evident at intermediate and late stage of colonization than at early one. These results support the statement that the outcome of the herbivore‐periphyton interaction may depend on the successional stage of the periphyton community. In spring Fragilaria pinnata relative abundance, on the basis of cell counts, was reduced by grazing and Nitzschia palea was enhanced. In the winter experiment, grazing decreased Achnanthes minutissima relative abundance. (© 2004 WILEY‐VCH Verlag GmbH &amp; Co. KGaA, Weinheim)

Impact on the water column biogeochemistry of a Mediterranean mussel and fish farm

We investigated and compared the impact of organic loads due to the biodeposition of mussel and fish farms on the water column of a coastal area of the Tyrrhenian Sea (Western Mediterranean). Physico-chemical data (including oxygen, nutrients, DOC and particulate organic matter), microbial variables (picoplankton and picophytoplankton density and biomass) and phytoplankton biomass (as chlorophyll- a) were determined on a monthly basis from March 1997 to February 1998. The results of this study indicate that both fish farm and mussel culture did not alter significantly dissolved inorganic phosphorus and chlorophyll- a values, while inorganic nitrogen concentrations were higher in mussel farm area. However, waters overlying the fish farm presented significantly higher DOC concentrations. In contrast, no significant differences were observed comparing particulate matter concentrations. The increased DOC concentrations determined a response of the heterotrophic fraction of picoplankton, while picophytoplankton, likewise phytoplankton, did not display differences among fish or mussel farms and control site. From the analysis of the different microbial components, it is possible to conclude that the impact of fish farms is evident only for the heterotrophic components. The comparative analysis of the mussel biodeposition and fish-farm impact revealed that mussel farms induced a considerably lower disturbance, apparently limited to an increased density and biomass of microbial assemblages beneath the mussel cultures.

Particulate organic matter composition in a semi-enclosed Periantarctic system: the Straits of Magellan

The elemental and biochemical composition of particulate organic matter (POM) was investigated in the Straits of Magellan during February-March 1991. Twenty-two stations were selected in order to identify different areas of the Magellan ecosystem from a trophic point of view. The Strait of Magellan can be divided into three subsystems characterized by different hydrological and geomorphological conditions. Seston concentrations were mostly constrained by physical events, particularly the influence of oceanic and land run-off water inputs and the strong vertical mixing and resuspension events. POM composition displayed quali-quantitative differences between the three areas. In the first subsystem, influenced by Pacific waters, the low seston and POM concentrations and the high POC/Chl-a ratio values indicated the general predominance of the detrital and heterotrophic fractions. In the second subsystem, characterized by superficial stratification, higher seston and organic matter concentrations and lower values of POC/Chl-a ratio were found, indicating that this subsystem was influenced by an active autotrophic component. Shallow waters with intense tidal regime and strong vertical mixing characterized the third subsystem, connected to the Atlantic Ocean, which displayed an increasing importance of the inorganic fraction (values of the POC/TSM ratio lower than in the other systems). Moreover, the third subsystem showed higher values of the RNA/DNA ratio, possibly indicating that resuspension events may enhance the metabolic state of the organic particles mainly dominated by heterotrophic components.