Heteronuclear NMR Research Articles

Homo- and Heteronuclear NMR Methods for Signal Assignments in 1H and 13C Spectra of 1-Aminoacyloxygermatran

Homo- and Heteronuclear NMR Methods for Signal Assignments in 1H and 13C Spectra of 1-Aminoacyloxygermatran

A Dibismuthane with Olefin Functional Groups: Towards Tridentate Hybrid Chalcogen/Olefin Ligands

AbstractBis[dibenzobismepine], a dibismuthane composed of two bismepine units (R2Bi−BiR2), was synthesized and fully characterized (R2=(C6H4CH)2). Reactions of this dibismuthane with diphenyl dichalcogenides, dibenzoylperoxide, and elemental chalcogens have been investigated. All products of these reactions have been isolated and fully characterized, including a series of compounds R2Bi−E−BiR2 (E=O−Te). These species contain two olefin units of the bismepine moieties and a chalcogen atom as potential coordination sites. The potential of these species to act as hybrid tridentate chalcogen/olefin ligands with bismuth atoms as structure‐determining elements in the backbone has been investigated by theoretical approaches, aiming at the complexation of CoI, RhI, IrI and Ni0, Pd0, Pt0. The analytical techniques applied in this work include heteronuclear and 2D NMR spectroscopy, elemental analysis, single‐crystal X‐ray diffraction analysis, and DFT calculations.

A Heteronuclear NMR Study of Aqueous Lithium Salt Solutions of l-Alanine: Revealing Solute Hydrophobic Association through the NMR B' Coefficient.

In the present study, a set of heteronuclear NMR approaches has been adopted to investigate the solution behavior of a small hydrophobic solute l-alanine in the presence of lithium (Li) salts. The presence of salts plays a major role in determining the structure and solvation of biomolecules. It therefore evokes interest to understand the effect of Li salts on amino acids (alanine), the building block of biomolecules. The ionic solute dynamics in the present case has been probed using 1H, 7Li, and 13C nuclei available in the aqueous Li salt solution of l-alanine. Nuclear longitudinal spin relaxation of alanine protons was examined at a variable concentration range of three lithium salts, i.e., LiCl, Li2SO4 and LiClO4, to introduce the NMR B' coefficient for each salt defining ionic solute/solvent interaction in the solution. Analysis of the active relaxation mechanism of 7Li spin-lattice relaxation further revealed the presence of alanine in the solvation shell of Li ion depending on the anionic counterpart.

Active Ensembles in Methane Dehydroaromatization over Molybdenum/ZSM-5 Zeolite Identified by 2D 1 H-95 Mo Magic Angle Spinning Nuclear Magnetic Resonance Correlation Spectroscopy.

Methane dehydroaromatization (MDA) over Mo-modified zeolite is a potential catalytic route for converting natural gas into valuable aromatics. However, the active species in this reaction are highly complex, involving diverse Mo species, acidic sites of zeolite, and organic molecules. Herein, we apply 1D 95 Mo NMR and 2D 1 H-95 Mo heteronuclear correlation solid-state NMR spectroscopy to directly observe the active ensembles in the confined channels of Mo/ZSM-5 zeolite during the MDA reaction. We monitor the evolution of the spatial correlations of Mo species with the Brønsted acid sites and organic products (olefins and aromatics) in the zeolite channels. We identified two kinds of MoOx Cy species, with the more carbidic one (MoOx Cy -II) exhibiting higher activity for methane activation and benzene formation. The strong spatial interactions between the active Mo species and the organic species in the Mo/ZSM-5 pores are related to the MDA activity.

Expanding the Utility of β-Diketiminate Ligands in Heavy Group VI Chemistry of Molybdenum and Tungsten.

We report the synthesis of 17 molybdenum and tungsten complexes supported by the ubiquitous BDI ligand framework (BDI = β-diketiminate). The focal entry point is the synthesis of four molybdenum and tungsten(V) BDI complexes of the general formula [MO(BDIR)Cl2] [M = Mo, R = Dipp (1); M = W, R = Dipp (2); M = Mo, R = Mes (3); M = W, R = Mes (4)] synthesized by the reaction between MoOCl3(THF)2 or WOCl3(THF)2 and LiBDIR. Reactivity studies show that the BDIDipp complexes are excellent precursors toward adduct formation, reacting smoothly with dimethylaminopyridine (DMAP) and triethylphosphine oxide (OPEt3). No reaction with small phosphines has been observed, strongly contrasting the chemistry of previously reported rhenium(V) complexes. Additionally, the complexes 1 and 2 are good precursors for salt metathesis reactions. While 1 can be chemically reduced to the first stable example of a Mo(IV) BDI complex 15, reduction of 2 resulted in degradation of the BDI ligand via a nitrene transfer reaction, leading to MAD (4-((2,6-diisopropylphenyl)imino)pent-2-enide) supported tungsten(V) and tungsten(VI) complexes 16 and 17. All reported complexes have been thoroughly studied by VT-NMR and (heteronuclear) NMR spectroscopy, as well as UV-vis and EPR spectroscopy, IR spectroscopy, and X-ray diffraction analysis.

Polycephalums A and B, New Anticoagulant Constituents Isolated from Clinopodium polycephalum.

Two previously undescribed compounds (1 and 2) were isolated from Clinopodium polycephalum, a medicinal plant distributed in southwestern and eastern China. Their structures were elucidated using MS analyses and extensive 2D-homo and heteronuclear NMR data interpretations. Both compounds 1 and 2 could significantly shorten APTT and PT, and their procoagulant effect was comparable to that of positive drugs. At the same time, compound 2 had certain antioxidant activity (IC50 value of 2.25±0.05 μM in ABTS assay).

Two new tirucallane-type triterpenes from the aerial parts of Euphorbia retusa

Chemical characterization of the dichloromethane extract of Euphorbia retusa aerial parts by chromatographic methods afforded an inseparable mixture of two new tirucallane-type triterpenoids namely (3β, 24S)- and (3β, 24R)-tirucalla-7,25-diene-3,24-diol (1a and 1b) respectively, together with nine known compounds including six triterpenoids and three phenylpropanoids. Their structures were established on the basis of spectroscopic analyses, including 1D- and 2D- homo- and heteronuclear NMR experiments and mass spectrometry, as well as comparison with data from related compounds. The chemotaxonomic aspects were also discussed.

Optimal control derived sensitivity-enhanced CA-CO mixing sequences for MAS solid-state NMR – Applications in sequential protein backbone assignments

We have recently introduced optimal-control derived pulse sequences for sensitivity-enhanced heteronuclear correlation NMR experiments of solid proteins. Preservation of equivalent coherence transfer pathways using transverse-mixing pulses (TROP) in multidimensional pulse schemes allows to increase the sensitivity of the experiments by more than a factor of 2 per each indirect dimension. In this article, we present homonuclear CA-CO transverse-mixing elements (homoTROP) that are based on dipolar interactions and achieve similar gains as the heteronuclear TROP pulses described previously. Both transfer elements were subsequently implemented in 3D se-hCAcoNH and se-hCOcaNH, that together with the previously introduced 3D se-hCANH and se-hCONH experiments yield a complete set of sensitivity-enhanced protein backbone assignment experiments. In contrast to the J-coupling based methods that are used at fast (60 kHz) and ultrafast MAS (>100 kHz), the homoTROP experiments employ about 10-times shorter mixing times making use of the larger magnitude of the dipolar coupling in comparison to the J couplings. The experiments are demonstrated using a microcrystalline, perdeuterated sample of the chicken alpha-spectrin SH3 domain in which all exchangeable sites are fully back-substituted with protons. We evaluated the gains in efficiency in all experiments site-specifically observing that the se-hCAcoNH and se-hCOcaNH experiments yield an increase in sensitivity by a factor of 1.36±0.09 and at least a factor of 1.8 with respect to the conventional hcoCAcoNH and hCOcaNH J-based experiments.

An expeditious on-water regioselective synthesis of novel arylidene-hydrazinyl-thiazoles as DNA targeting agents

A series of twenty novel (E)-arylidene-hydrazinyl-thiazole derivatives has been synthesized employing α-bromo-β-diketones, thiosemicarbazide, and aromatic/heteroaromatic aldehydes with a simple and facile one-pot multicomponent reaction passageway. This organic transformation proceeds efficiently in aqueous media and demonstrated a large functional group tolerance. The structures and stereochemistry of the regioisomeric product were rigorously characterized using heteronuclear 2D NMR experiments. The binding potential of the synthesized analogs with B-DNA dodecamer d(CGCGAATTCGCG)2 was primarily screened using molecular modeling tools and further, mechanistic investigations (either groove or intercalation) were performed using various spectroscopic techniques such as UV–Visible, Fluorescence, and Circular dichroism. The absorption spectra showed a hyperchromic shift in the absorption maxima of ctDNA with successive addition of thiazole derivatives, implying groove binding mode of interactions, further supported by displacement assay and circular dichroism analysis. Furthermore, steady-state fluorescence analysis revealed the static mode of quenching and moderate bindings between the ligand and DNA biomolecule. The competitive studies showed that the derivatives having a pyridinyl (heteroaromatic) group in their structure, bind with the nucleic acid of calf-thymus (ctDNA) more effectively in the minor groove region as compared with the aromatic substitutions.

Boron Adsorption Kinetics of Microcrystalline Cellulose and Polymer Resin

Tailoring boron-polysaccharide interactions is an important strategy for developing functional soft materials such as hydrogels, fire retardants, and sorbents for environmental remediation, for example, using lignocellulosic biomass. For such applications to be realized, it is paramount to understand the adsorption kinetics of borate anions on cellulose and their local structures. Here, the kinetic aspects of boron adsorption by microcrystalline cellulose, lignin, and polymeric resin are investigated and compared. Borate anions interact with the vicinal diols in the glucopyranoside moieties of cellulose to yield chemisorbed boron chelate complexes. In contrast to cellulose, technical lignin contains fewer cis-vicinal diols, and it does not have a tendency to form such chelate complexes upon treatment with the aqueous boric acid solution. The formation kinetics and stability of these chelate complexes strongly depend on nanoscale structures, as well as reaction conditions such as pH and concentration of the sorbate and sorbent. Specifically, insights into the distinct boron adsorption sites were obtained by solid-state one-dimensional (1D) 11B magic-angle spinning NMR and the local structures and intermolecular interactions in the vicinities of boron chelate complexes are elucidated by analyzing two-dimensional (2D) 1H-13C and 11B-1H heteronuclear correlation NMR spectra. The total boron adsorption capacity of cellulose is estimated to be in the 1.3-3.0 mg range per gram of sorbent, which is lower than the boron adsorption capacity of a polystyrene-based resin, ∼17.2 mg of boron per gram of Amberlite IRA 743. Our study demonstrates that the local backbone and side chain flexibility as well as the structures of polyol groups play a significant role in determining the kinetic and thermodynamic stability of chelate complexes, yielding to different boron adsorption capabilities of lignocellulosic polymers.

Mixed Methyl/Chlorido Yttrium(III) Complexes Supported by a Neutral Tridentate N-Donor Ligand

Trimethylyttrium, supported by the neutral tridentate ligand Me3TACN (1,4,7-trimethyl-1,4,7-triazacyclononane), is readily synthesized from (Me3TACN)YCl3 (via salt metathesis with MeLi in THF) or [YMe3]n (via Me3TACN-donor addition in toluene). Such discrete complex (Me3TACN)YMe3 reacts with trimethylchlorosilane according to a silane elimination protocol, affording well-defined mixed methyl/chlorido complexes of the composition [(Me3TACN)YMe3–xClx] (x = 1, 2, 3). All complexes were characterized by X-ray diffraction, homo- and heteronuclear NMR (especially 89Y) and FTIR spectroscopies, and elemental analysis. The reaction of heteroleptic complex [(Me3TACN)YMe2Cl] with dibenzyl ketone was investigated.

Reactivity of a Cationic Bismuth Amide towards Unsymmetric Heterocumulenes.

The reactivity of a literature-known, ring-strained bismuth amide cation towards a range of unsymmetric heterocumulene substrates has been investigated. Reactions with ketenes R2 C=C=O (R=Me, Ph), isocyanates R'N=C=O, and isothiocyanates R'N=C=S (R'=Ph, 4-CF3 -C6 H4 ) proceed via facile insertion of the heterocumulene in the Bi-N bond of the cationic bismuth amide. Unexpectedly pronounced differences in the regioselectivity of these insertion reactions have been observed, yielding a rich variety of heterocycle motifs (BiC2 NC2 , BiC2 NCO, BiC2 NCS, BiC2 NCN), some of which are unprecedented. Parameters that control the regioselectivity of the insertion reactions have been identified and are discussed based on experimental and theoretical investigations. Analytical techniques applied in this work include heteronuclear and two-dimensional NMR spectroscopy, IR spectroscopy, elemental analysis, single-crystal X-ray diffraction analyses, and DFT calculations.

Partial assignments of tunicate βγ-crystallin structure.

Tunicate Ciona intestinalis (Ci-βγ-crystallin) is a model to study evolution of vertebrates as it has an evolutionary position between the microbial crystallins and the vertebrate lens proteins. The single-domain βγ-crystallin of the tunicate Ci-βγ-crystallin represents the single-domain ancestor of the vertebrate βγ-crystallin. It has been shown that the tunicate Ci-βγ-crystallin has a high affinity to bind to Ca2+ and that this binding greatly stabilizes the protein both thermally and chemically. However, human γS-crystallin doesn't bind to Ca2+ but it stays stable. NMR spectroscopy is used to study the structure and properties of Ci-βγ-crystallin to better understand the stability and evolutionary progression from ancestral to human lens βγ-crystallins. Residual dipolar couplings (RDCs), derived from 15N-1H in-phase/anti-phase (IPAP) heteronuclear single quantum coherence NMR spectra, provide relative orientations among internuclei vectors. These orientations can be used to build the protein backbone structure. RDCs are obtained by weakly aligning proteins in a magnetic field to create an anisotropic condition. The magnetic dipole-dipole interactions no longer average to zero and give measurable dipolar couplings. RDCs are used along with other experimental NMR data for protein structure determination. Xplor-NIH package will be used for protein structure refinement. Xplor-NIH is a popular software package for biomolecular structure determination. The program takes experimental NMR data such as RDCs and other pre-determined theoretical parameters such as covalent geometry (bond lengths and angles) to find the minimum energy structures.

Direct Expression of Fluorinated Proteins in Human Cells for 19F In-Cell NMR Spectroscopy.

In-cell NMR spectroscopy is a powerful approach to study protein structure and function in the native cellular environment. It provides precious insights into the folding, maturation, interactions, and ligand binding of important pharmacological targets directly in human cells. However, its widespread application is hampered by the fact that soluble globular proteins often interact with large cellular components, causing severe line broadening in conventional heteronuclear NMR experiments. 19F NMR can overcome this issue, as fluorine atoms incorporated in proteins can be detected by simple background-free 1D NMR spectra. Here, we show that fluorinated amino acids can be easily incorporated in proteins expressed in human cells by employing a medium switch strategy. This straightforward approach allows the incorporation of different fluorinated amino acids in the protein of interest, reaching fluorination efficiencies up to 60%, as confirmed by mass spectrometry and X-ray crystallography. The versatility of the approach is shown by performing 19F in-cell NMR on several proteins, including those that would otherwise be invisible by 1H-15N in-cell NMR. We apply the approach to observe the interaction between an intracellular target, carbonic anhydrase 2, and its inhibitors, and to investigate how the formation of a complex between superoxide dismutase 1 and its chaperone CCS modulates the interaction of the chaperone subunit with the cellular environment.

Optimization of heteronuclear ultrafast 2D NMR for the study of complex mixtures hyperpolarized by dynamic nuclear polarization.

Hyperpolarized 13C NMR at natural abundance, based on dissolution dynamic nuclear polarization (d-DNP), provides rich, sensitive and repeatable 13C NMR fingerprints of complex mixtures. However, the sensitivity enhancement is associated with challenges such as peak overlap and the difficulty to assign hyperpolarized 13C signals. Ultrafast (UF) 2D NMR spectroscopy makes it possible to record heteronuclear 2D maps of d-DNP hyperpolarized samples. Heteronuclear UF 2D NMR can provide correlation peaks that link quaternary carbons and protons through long-range scalar couplings. Here, we report the analytical assessment of an optimized UF long-range HETCOR pulse sequence, applied to the detection of metabolic mixtures at natural abundance and hyperpolarized by d-DNP, based on repeatability and sensitivity considerations. We show that metabolite-dependent limits of quantification in the range of 1-50 mM (in the sample before dissolution) can be achieved, with a repeatability close to 10% and a very good linearity. We provide a detailed comparison of such analytical performance in two different dissolution solvents, D2O and MeOD. The reported pulse sequence appears as an useful analytical tool to facilitate the assignment and integration of metabolite signals in hyperpolarized complex mixtures.

Aryldimethylelement cations of the heavier group 14 elements. An essentially three-coordinate plumbylium ion.

The kinetically stabilized group 14 cations [RindEMe2][B(C6F5)4] (E = Si, Sn, Pb) were prepared and fully characterized (Rind = dispiro[fluorene-9,3'-(1',1',7',7'-tetramethyl-s-hydrindacen-4'-yl)-5',9''-fluorene). The deshielded heteronuclear NMR chemical shifts (δ(29Si) = 160.4, δ(119Sn) = 619.9, δ(207Pb) = 1549.5) are indicative of the low coordination numbers.

Bicyclic (alkyl)(amino)carbene (BICAAC)-supported phosphinidenes.

Herein, the synthesis and characterization of bicyclic (alkyl)(amino)carbene (BICAAC)-stabilized phosphinidenes (1-4) are reported. Compounds 1-3 were obtained by reacting trihalophosphine [PX3, X = Cl (1), Br (2), I (3)] with BICAAC in THF. A BICAAC-stabilized bis-phosphinidene (4) was obtained from the reduction of compound 2. All four compounds were characterized by X-ray crystallography and heteronuclear NMR spectroscopy. Theoretical calculations indicated the predominant C(carbene)P double bond characteristic in compounds 1-4.

Rare-earth-metal trimethylsilylmethyl ate complexes.

En route to putative rare-earth-metal alkylidene complex Li[Lu(CH2SiMe3)2(CHSiMe3)], according to Schumann's original protocol, the reaction of YCl3 with LiCH2SiMe3 in a mixture of diethyl ether and n-pentane afforded a neosilyl ate complex of composition Li3Y(CH2SiMe3)6. Tetrametallic complex Li3Y(CH2SiMe3)6 shows an unprecedented structural motif in the solid state and was further characterized by heteronuclear 1H/13C/7Li/29Si/89Y, as well as VT NMR and DRIFT spectroscopies. Analysis of the thermolysis product via heteronuclear NMR spectroscopy and its reactivity towards benzophenone gave strong evidence for an alkylidene formation upon decomposition. Application of a similar protocol for the smallest rare-earth-metal scandium led to the isolation of ate complex [Li(thf)4][LiSc2(CH2SiMe3)8] as the preferred crystallized product. Here, the reaction of adduct ScCl3(thf)3 and LiCH2SiMe3 was performed in Et2O/n-hexane, in the absence of additional THF. The reaction of LaCl3(thf) with 3 equiv. of LiCH2SiMe3 in THF/Et2O at -40 °C yielded the ate complex [Li(thf)4][La(CH2SiMe3)4(thf)], which is the first of its kind.

Photoswitchable electron-rich phosphines: using light to modulate the electron-donating ability of phosphines.

The synthesis and properties of photoswitchable electron-rich phosphines containing N-heterocyclic imines equipped with a photochromic dithienylethene unit are reported. Heteronuclear NMR spectroscopy and UV/vis studies reveal that the imine substituents undergo reversible electrocyclic ring-closing and ring-opening reactions upon exposure to UV and visible light, respectively. The photoisomerization alters the electron-donating ability of the phosphines by up to ΔTEP = 8 cm-1.

Reactivity of triphosphinoboranes towards H3B·SMe2: access to derivatives of boraphosphacycloalkanes with diverse substituents.

Triphosphinoboranes activated the B-H bond in the BH3 molecule without any catalysts at room temperature. Hydroboration reactions led to boraphosphacyloalkanes with diverse structures. The outcomes of reactions depend on the size of the phosphanyl substituent on the boron atom of the parent triphosphinoborane, where derivatives of boraphosphacyclobutane and boraphosphacyclohexane were obtained. Furthermore, the precursor of triphosphinoboranes, namely bromodiphosphinoborane, also exhibited high reactivity towards H3B·SMe2, yielding bromo-substituted boraphosphacyclobutane. The obtained products were characterized by heteronuclear NMR spectroscopy, single crystal X-ray diffraction, and elemental analysis.