We present the analysis of the time series observations of CoRoT\,102699796 obtained by the CoRoT satellite that show the presence of five independent oscillation frequencies in the range 3.6-5 c/d. Using spectra acquired with FLAMES@VLT, we derive the following stellar parameters: spectral type F1V, T$_{\rm eff}$=7000$\pm$200 K, log(g)=$3.8\pm0.4$, [M/H]=$-1.1\pm0.2$, $v$sin$i$=$50\pm5$ km/s, L/L$_{\odot}$=21$^{+21}_{-11}$. Thus, for the first time we report the existence of a metal poor, intermediate-mass PMS pulsating star. Ground-based and satellite data are used to derive the spectral energy distribution of CoRoT\,102699796 extending from the optical to mid-infrared wavelengths. The SED shows a significant IR excess at wavelengths greater than $\sim5 \mu$. We conclude that CoRoT\,102699796 is a young Herbig Ae (F1Ve) star with a transitional disk, likely associated to the HII region [FT96]213.1-2.2. The pulsation frequencies have been interpreted in the light of the non-radial pulsation theory, using the LOSC code in conjunction with static and rotational evolutionary tracks. A minimization algorithm was used to find the best-fit model with M=1.84 M$_{\odot}$, T$_{\rm eff}$=6900 K which imply an isochronal age of t$\sim$2.5 Myr. This result is based on the interpretation of the detected frequencies as $g$-modes of low-moderate $n$-value. To our knowledge, this is the first time that such modes are identified in a intermediate-mass PMS pulsating star. Since CoRoT\,102699796 lies in the region of the HR diagram where the $\delta$ Sct and $\gamma$ Dor instability strips intersect, we argue that the observed pulsation characteristics are intermediate between these classes of variables, i.e. CoRoT\,102699796 is likely the first PMS hybrid $\gamma$ Dor-$\delta$ Sct pulsator ever studied.
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