Objective: This study attempted to evaluate the combined effects of a decompressive craniectomy and prolonged selective brain hypothermia on large hemispheric infarction in a rat model. Methods: Permanent middle cerebral artery (MCA) infarction using an endovascular occlusion technique was created in the rats assigned to 4 groups. Normothermia was maintained without a craniectomy in group A (n = 20) as the controls, prolonged (> 44 hours), selective brain hypothermic treatment was performed on group B (n = 20), a craniectomy was performed on group C (n = 18), and prolonged, selective brain hypothermic treatment using a cooling coil implanted in the craniectomy site was combined with a craniectomy for group D (n = 18). Results: When compared with the controls, group B and C exhibited a significantly reduced infarct volume. Furthermore, group D showed a further reduction in the infarct volume (P < 0.01) and improved neurological score (P < 0.05) when compared with group C. This was associated with an increased neuronal cell count and reduced hyperactive microgia and hypertrophic astrocytes in the cortical penumbra (P < 0.01). Moreover, a higher preservation of normal-appearing axonal bundles and the blood brain barrier (BBB) was observed in the core infarct region at the caudoputamen. Conclusions: A decompressive craniectomy reduced the infarct volume and improved the neurological outcomes in a rat model of MCA infarction. Furthermore, when combined with prolonged selective brain hypothermia, significant additional benefits were observed for the neurological outcomes, infarct volume, and degree of neuroinflammation.