Helical Polymers Research Articles

Impact of an alpha helix and a cysteine–cysteine disulfide bond on the resistance of bacterial adhesion pili to stress

Escherichia coli express adhesion pili that mediate attachment to host cell surfaces and are exposed to body fluids in the urinary and gastrointestinal tracts. Pilin subunits are organized into helical polymers, with a tip adhesin for specific host binding. Pili can elastically unwind when exposed to fluid flow forces, reducing the adhesin load, thereby facilitating sustained attachment. Here we investigate biophysical and structural differences of pili commonly expressed on bacteria that inhabit the urinary and intestinal tracts. Optical tweezers measurements reveal that class 1a pili of uropathogenic E. coli (UPEC), as well as class 1b of enterotoxigenic E. coli (ETEC), undergo an additional conformational change beyond pilus unwinding, providing significantly more elasticity to their structure than ETEC class 5 pili. Examining structural and steered molecular dynamics simulation data, we find that this difference in class 1 pili subunit behavior originates from an α-helical motif that can unfold when exposed to force. A disulfide bond cross-linking β-strands in class 1 pili stabilizes subunits, allowing them to tolerate higher forces than class 5 pili that lack this covalent bond. We suggest that these extra contributions to pilus resiliency are relevant for the UPEC niche, since resident bacteria are exposed to stronger, more transient drag forces compared to those experienced by ETEC bacteria in the mucosa of the intestinal tract. Interestingly, class 1b ETEC pili include the same structural features seen in UPEC pili, while requiring lower unwinding forces that are more similar to those of class 5 ETEC pili.

Energetics of Competing Chiral Supramolecular Polymers.

Chirality can have unexpected consequences including on properties other than spectroscopic. We show herein that a racemic mixture of bis-urea stereoisomers forms thermodynamically stable supramolecular polymers that result in a more viscous solution than for the pure stereoisomer. The origin of this macroscopic property was probed by characterizing the structure and stability of the assemblies. Both racemic and non-racemic bis-urea stereoisomers form two competing helical supramolecular polymers in solution: a double and a single helical structure at low and high temperature, respectively. The transition temperature between these assemblies, as probed by spectroscopic and calorimetric analyses, is strongly influenced by the composition (by up to 70 °C). A simple model that accounts for the thermodynamics of this system, indicates that the stereochemical defects (chiral mismatches and helix reversals) affect much more the stability of single helices. Therefore, the heterochiral double helical structure predominates over the single helical structure (whilst the opposite holds for the homochiral structures), which explains the aforementioned higher viscosity of the racemic bis-urea solution. This rationale constitutes a new basis to tune the macroscopic properties of the increasing number of supramolecular polymers reported to exhibit competing chiral nanostructures.

Dynamic Chiral PPA–AgNP Nanocomposites: Aligned Silver Nanoparticles Decorating Helical Polymers

A novel approach to prepare stimulus-sensitive nanocomposites is described, based on a dynamic helical polymer, chiral poly(phenylacetylene) (PPA), and silver nanoparticles. To preserve the dynamic helical behavior of PPA within the nanocomposite, a weak and adaptive supramolecular interaction, such as that between amide group–silver nanoparticle, is used to link the metal nanoparticle to the polymer. To prepare the composite, we chose PPA as a helical polymer that bears an amide group as a monomer repeating unit, poly-(R)-1, which can coordinate with Ag+ ions. The silver ions that form complexes with the pendant groups are further reduced, through the use of NaBH4, to AgNPs that are stabilized by the amide groups of PPA. As a result, 2.8 nm silver nanoparticles are formed and aligned along the polymer chain with a regular 3.1 nm interparticle distance corresponding to the helical pitch of the polymer. The weak amide/AgNP interactions allow PPA to adopt either P or M helical structures on the AgNPs through supramolecular adaptive mechanisms induced by appropriate external stimuli.

Single crystals of mechanically entwined helical covalent polymers.

Double helical conformation of polymer chains is widely observed in biomacromolecules and plays an essential role in exerting their biological functions, such as molecular recognition and information storage. It has remained challenging, however, to prepare synthetic helical polymers, and those that exist have mainly been limited to single-stranded polymers or short oligomeric double helices. Here, we report the synthesis of covalent helical polymers, with a high molecular weight, from the achiral monomer hexahydroxytriphenylene through to spiroborate formation. Polymerization and crystallization occurred simultaneously under solvothermal conditions to form single crystals of the resulting helical covalent polymers. Characterization by single-crystal X-ray diffraction showed that each crystal consisted of pairs of mechanically entwined polymers. No strong non-covalent interactions were observed between the two helical polymers that formed a pair; instead, each strand interacted with neighbouring pairs through hydrogen bonding. Each individual crystal was made up of helical polymers of the same handedness, but the crystallization process produced a racemic conglomerate, with equal amounts of right-handed and left-handed crystals.

Formation of “hemp flowers” structures from polyphenyl induced by C70

In this manuscript, the structure liking a Chinese food “hemp flowers” is formed through polyphenyl which is induced by C70. The whole formation process is tracked by the molecular dynamics simulation. The results exhibited that C70 induced polyphenyl to form a “hemp flowers” structure experiencing four stages which are transfer, wrap, maintain and twist. Both the van der Waals potential well and the π–π stacking interaction between the polyphenyl and C70 play the major role in the formation of helical nanostructures. The position of C70 makes the configuration different from the “hemp flowers”. Furthermore, the final configuration of polymer is also depended on the number of C70, the length of polymer and the simulation temperature. The new geometrical structures between polyphenyl and C70 may supply more theoretical foundation in chemical functionalization and helical polymer synthesis, which may be helpful insight for fabricating nanoscale devices.

Secondary Structure in Nonpeptidic Supramolecular Block Copolymers

Proteins contain a level of complexity-secondary and tertiary structures-that polymer chemists aim to imitate. The bottom-up synthesis of protein-mimicking polymers mastering sequence variability and dispersity remains challenging. Incorporating polymers with predefined secondary structures, such as helices and π-π stacking sheets, into block copolymers circumvents the issue of designing and predicting one facet of their 3D architecture. Block copolymers with well-defined secondary-structure elements formed by covalent chain extension or supramolecular self-assembly may be considered for localized tertiary structures.In this Account, we describe a strategy toward block copolymers composed of units bearing well-defined secondary structures mixed in a "plug-and-play" manner that approaches a modicum of the versatility seen in nature. Our early efforts focused on the concept of single-chain collapse to achieve folded secondary structures through either hydrogen bonding or quadrupole attractive forces. These cases, however, required high dilution. Therefore, we turned to the ring-opening metathesis polymerization (ROMP) of [2.2]paracyclophane-1,9-dienes (pCpd), which forms conjugated, fluorescent poly(p-phenylenevinylene)s (PPVs) evocative of β-sheets. Helical building blocks arise from polymers such as poly(isocyanide)s (PICs) or poly(methacrylamide)s (PMAcs) containing bulky, chiral side groups while the coil motif can be represented by any flexible chain; we frequently chose poly(styrene) (PS) or poly(norbornene) (PNB). We installed moieties for supramolecular assembly at the chain ends of our "sheets" to combine them with complementary helical or coil-shaped polymeric building blocks.Assembling hierarchical materials tantamount to the complexity of proteins requires directional interactions with high specificity, covalent chain extension, or a combination of both chemistries. Our design is based on functionalized reversible addition-fragmentation chain-transfer (RAFT) agents that allowed for the introduction of recognition motifs at the terminus of building blocks and chain-terminating agents (CTAs) that enabled the macroinitiation of helical polymers from the chain end of ROMP-generated sheets and/or coils. To achieve triblock copolymers with a heterotelechelic helix, we relied on supramolecular assembly with helix and coil-shaped building blocks. Our most diverse structures to date comprised a middle block of PPV sheets, parallel or antiparallel, and supramolecularly or covalently linked, respectively, end-functionalized with molecular recognition units (MRUs) for orthogonal supramolecular assembly. We explored PPV sheets with multiple folds achieved by chain extension using alternating pCpd and phenyl-pentafluorophenyl β-hairpin turns. Using single-molecule polarization spectroscopy, we showed that folding occurs preferentially in multistranded over double-stranded PPV sheets. Our strategy toward protein-mimicking and foldable polymers demonstrates an efficient route toward higher ordered, well-characterized materials by taking advantage of polymers that naturally manifest secondary structures. Our studies demonstrate the retention of distinct architectures after complex assembly, a paradigm that we believe may extend to other polymeric folding systems.

Synthesis of Single-Handed Helical Spiro-Conjugated Ladder Polymers through Quantitative and Chemoselective Cyclizations*.

We report the unprecedented synthesis of one-handed helical spiro-conjugated ladder polymers with well-defined primary and secondary structures, in which the spiro-linked dibenzo[a,h]anthracene fluorophores are arranged in a one-handed twisting direction, through quantitative and chemoselective acid-promoted intramolecular cyclizations of random-coil precursor polymers composed of chiral 1,1'-spirobiindane and achiral bis[2-(4-alkoxyphenyl)ethynyl]phenylene units. Intense circular dichroism (CD) and circularly polarized luminescence (CPL) were observed, whereas the precursor polymers exhibited negligible CD and CPL activities. The introduction of 2,6-dimethyl substituents on the 4-alkoxyphenylethynyl pendants is of key importance for this simple, quantitative, and chemoselective cyclization. This strategy is applicable to the defect-free precise synthesis of other varieties of fully π-conjugated molecules and coplanar ladder polymers that have not been achieved before.

Light‐Responsive Circularly Polarized Luminescence Polymers with INHIBIT Logic Function

AbstractDynamically tuning the emission of circularly polarized luminescence (CPL) materials through external stimuli is fascinating because of their fundamental and application interests. In this work, light‐responsive and luminescence‐tunable CPL‐active materials are synthesized by mixing achiral helical polymer containing vibration‐induced emission (VIE) molecules and spiropyran (SP) with a chiral helical polymer. Through regulating the distinct emission of VIE molecules and the reversible photoisomerization of SP, the dynamic Förster resonance energy transfer (FRET) can be explored to reversibly control the emission color of CPL in different states after light‐controlled isomerization. This project is the first comprehensive investigation of CPL‐active materials with VIE properties. Finally, taking the advantage of the multistimuli responsive CPL signal in different states, an “INHIBIT” logic gate with CPL signal output based on the combination of control of UV/vis light irradiation time and state alternation is constructed.

Supramolecular Copolymerization of Bichromophoric Chiral and Achiral Perylenediimide Dyes

Propagation and amplification of chirality are considered to play an important role in the chemical evolution of biological homochirality. Stereochemical communications have been demonstrated to have a significant effect on the formation of chiral hierarchical structures in helical polymers, surface assemblies and supramolecular polymers. The formation of supramolecular copolymers based on chiral and achiral bichromophoric perylenediimide (PDI) dyes having a binaphtyl- and biphenyl-core-bridging unit, respectively, was investigated in terms of chiral amplification and propagation. The biphenyl-bridged PDI dye was expected to perform as a prochiral component to adopt both right- and left-handed twisting structures with the free rotation over the phenyl-phenyl linkage upon partnered with the chiral binaphtly PDI dye in the coassemblies. The coassemblies between the chiral and achiral PDI dyes with dissimilar core units demonstrated the composition dependent control in the length of supramolecular nanofibers as well as amplification of optical activity.

Single-molecule mechanics of synthetic aromatic amide helices: Ultrafast and robust non-dissipative winding

Summary Because of proteins’ many degrees of conformational freedom, programming protein folding dynamics, overall elasticity, and motor functions remains an elusive objective. Instead, smaller and simpler objects, such as synthetic foldamers, may be amenable to design. However, little is known about their mechanical performance. Here, we show that reducing molecular size may not compromise mechanical properties. We report that helical aromatic oligoamides as small as 1 nm possess outstanding elasticity and outperform most natural helices. Using single-molecule force spectroscopy, we characterize their folding trajectories and intermediate states. We show that they cooperatively and reversibly unwind at high forces. They extend up to 3.8 times their original length and rewind against considerable forces on a timescale of 10 μs. Pulling and relaxing cycles follow the same trace up to a very high loading rate, indicating that the mechanical energy accumulated during the stretching does not dissipate and is immediately reusable.

Molecular Conformation of Bent-Core Molecules Affected by Chiral Side Chains Dictates Polymorphism and Chirality in Organic Nano- and Microfilaments.

The coupling between molecular conformation and chirality is a cornerstone in the construction of supramolecular helical structures of small molecules across various length scales. Inspired by biological systems, conformational preselection and control in artificial helical molecules, polymers, and aggregates has guided various applications in optics, photonics, and chiral sorting among others, which are frequently based on an inherent chirality amplification through processes such as templating and self-assembly. The so-called B4 nano- or microfilament phase formed by some bent-shaped molecules is an exemplary case for such chirality amplification across length scales, best illustrated by the formation of distinct nano- or microscopic chiral morphologies controlled by molecular conformation. Introduction of one or more chiral centers in the aliphatic side chains led to the discovery of homochiral helical nanofilament, helical microfilament, and heliconical-layered nanocylinder morphologies. Herein, we demonstrate how a priori calculations of the molecular conformation affected by chiral side chains are used to design bent-shaped molecules that self-assemble into chiral nano- and microfilament as well as nanocylinder conglomerates despite the homochiral nature of the molecules. Furthermore, relocation of the chiral center leads to formation of helical as well as flat nanoribbons. Self-consistent data sets from polarized optical as well as scanning and transmission electron microscopy, thin-film and solution circular dichroism spectropolarimetry, and synchrotron-based X-ray diffraction experiments support the progressive and predictable change in morphology controlled by structural changes in the chiral side chains. The formation of these morphologies is discussed in light of the diminishing effects of molecular chirality as the chain length increases or as the chiral center is moved away from the core-chain juncture. The type of phase (B1-columnar or B4) and morphology of the nano- or microfilaments generated can further be controlled by sample treatment conditions such as by the cooling rate from the isotropic melt or by the presence of an organic solvent in the ensuing colloidal dispersions. We show that these nanoscale morphologies can then organize into a wealth of two- and three-dimensional shapes and structures ranging from flower blossoms to fiber mats formed by intersecting flat nanoribbons.

Metal‐Coordinated Supramolecular Polymers from the Minimalistic Hybrid Peptide Foldamers

AbstractAvailing the peptide folded architectures to design metal‐coordinated frameworks and cages is restricted due to the scarcity of readily accessible short and stable secondary structures. The secondary structures, α‐helix and β‐sheets, play significant roles in stabilizing tertiary folds of proteins. Designing such helical structures from the short sequences of peptides without having any steric restrictions is exceptionally challenging. Here we reveal the short α,γ‐hybrid tripeptide sequences that manifest stable helical structures without having any sterically constrained amino acids. These short hybrid tripeptides fold into helices even in the presence of two typically β‐sheet favoring Val residues. The hybrid helix consisting of terminal pyridine units coordinates with the metal ions and drives the helical polymerization. Depending on the sequence and the position of N in pyridine moieties, these peptides form selective metallogels with Ag+ and Cu2+ ions. The X‐ray diffracted analysis of the peptide single crystals obtained from the gel matrix reveals that the helical structure is maintained during the self‐assembly process. Further, by varying the counter anion, a 3D helical crystalline coordination polymer with permanent porosity is generated. The findings reported here can be used to design new functional metal‐foldamer coordinated polymers.

The Competitive Aggregation Pathway of an Asymmetric Chiral Oligo(p‐phenyleneethynylene) Towards the Formation of Individual P and M Supramolecular Helical Polymers

AbstractA complex aggregation pathway towards two diastereomeric P and M supramolecular helices arises from the aggregation of a short, chiral, and rigid oligo(phenyleneethynylene) [OPE, (S)‐1]. Thus, while AggI aggregate is obtained when a DCM solution of (S)‐1 is diluted with MCH at room temperature, AggII aggregate is generated only after a slow heating (353 K)/cooling (273 K) process. Interestingly, during AggI formation (mechanism 1), short P chain oligomers are produced, which have a great tendency to aggregate in plane, yielding brick‐like nanostructures that halt the aggregation process. On the other hand, after a heating/cooling cycle, long M type columnar helical aggregates (AggII) are obtained, formed by individual supramolecular polymer chains (mechanism 2) easily visualized by AFM. The two different P/M orientations obtained for AggI and AggII reveal the dynamic character of the system and its ability to create diastereomeric helical structures under the right conditions. Different experimental protocols were explored to prepare long M type columnar helical aggregates, which are not obtained by using the previous MCH/DCM 99/1 (v/v) solvent mixture. The generation of the desired M oriented supramolecular polymer is achieved when toluene is added to the solvent mixture in a 97/2/1 MCH/Tol/DCM (v/v/v) ratio.

Metal-Coordinated Supramolecular Polymers from the Minimalistic Hybrid Peptide Foldamers.

Availing the peptide folded architectures to design metal-coordinated frameworks and cages is restricted due to the scarcity of readily accessible short and stable secondary structures. The secondary structures, α-helix and β-sheets, play significant roles in stabilizing tertiary folds of proteins. Designing such helical structures from the short sequences of peptides without having any steric restrictions is exceptionally challenging. Here we reveal the short α,γ-hybrid tripeptide sequences that manifest stable helical structures without having any sterically constrained amino acids. These short hybrid tripeptides fold into helices even in the presence of two typically β-sheet favoring Val residues. The hybrid helix consisting of terminal pyridine units coordinates with the metal ions and drives the helical polymerization. Depending on the sequence and the position of N in pyridine moieties, these peptides form selective metallogels with Ag+ and Cu2+ ions. The X-ray diffracted analysis of the peptide single crystals obtained from the gel matrix reveals that the helical structure is maintained during the self-assembly process. Further, by varying the counter anion, a 3D helical crystalline coordination polymer with permanent porosity is generated. The findings reported here can be used to design new functional metal-foldamer coordinated polymers.

Helically Organized Fullerene Array in a Supramolecular Polymer Main Chain.

To date, supramolecular chemistry techniques have been applied to fullerene polymer synthesis, enabling the development of main-chain fullerene polymers whose primary structure is well regulated, including linear, dendritic, and net-like fullerene arrays. These research achievements have led to an intriguing scientific challenge to create main-chain fullerene polymers with higher structural regulation. Here, we report the fabrication of a helically organized fullerene array based on the supramolecular polymerization of chiral ditopic tetrakiscalix[5]arene hosts and a dumbbell-shaped fullerene. The molecular association between the chiral hosts and the dumbbell-shaped fullerene resulted in sizable supramolecular polymers in solution, with the highest degree of polymerization of more than 32. The achiral dumbbell-shaped fullerene exhibited circular dichroism in the π-π* transition bands arising from the fullerene moieties through supramolecular polymerization. End-capping experiments of the supramolecular helical polymers showed that the chirally twisted conformation of the dumbbell-shaped fullerene was directed by supramolecular polymerization. Finally, the helical morphology of the supramolecular polymer chain was visualized by atomic force microscopy. The successful development of helical main-chain fullerene polymers would break new ground in fullerene chemistry.

Handedness Inversion of Chiral 3‐Aminophenol Formaldehyde Resin Nanotubes Mediated by Metal Coordination

AbstractPrecise adjustment of microstructure and handedness of chiral nanomaterials is important to regulate their properties and performance. Herein, helical 3‐aminophenol formaldehyde resin (APF) nanotubes and corresponding carbonaceous nanotubes with controllable handedness and optical activity were obtained via an external metal ion‐mediated supramolecular co‐templating method in an enantiomerically pure template system, in which an appropriate amount of Mn2+ (Co2+ or Ni2+) with moderate coordination abilities can reverse the spatial arrangement of the phenylglycine‐based amphiphilic template molecules through metal coordination. Different stacking modes of coordination complexes in disparate metal ion systems lead to diverse helical senses (diameter and pitch) of the obtained helical APF. In addition, this coordination mode of metal intervention can be applied to other amine‐based helical polymer synthesis systems, which paves the way for the design of high‐quality chiral nanomaterials with satisfactory physical parameters and properties.

Helicity- and Molecular-Weight-Driven Self-Sorting and Assembly of Helical Polymers towards Two-Dimensional Smectic Architectures and Selectively Adhesive Gels.

Self-sorting plays a crucial role in living systems such as the selective assembly of DNA and specific folding of proteins. However, the self-sorting of artificial helical polymers such as biomacromolecules has rarely been achieved. In this work, single-handed helical poly(phenyl isocyanide)s bearing pyrene (Py) and naphthalene (Np) probes were prepared, which exhibited interesting self-sorting properties driven by both helicity and molecular weight (Mn ) in solution, solid state, gel, and on the gel surface as well. The polymers with the same helix sense and similar Mn can self-sort and assemble into well-defined two-dimensional smectic architectures and form stable gels in organic solvents. In contrast, mixed polymers with opposite handedness or different Mn were repulsive to each other and did not aggregate. Moreover, the gels of helical polymers with the same handedness and similar Mn can recognize themselves and adhere together to form a gel.

Helicity‐ and Molecular‐Weight‐Driven Self‐Sorting and Assembly of Helical Polymers towards Two‐Dimensional Smectic Architectures and Selectively Adhesive Gels

AbstractSelf‐sorting plays a crucial role in living systems such as the selective assembly of DNA and specific folding of proteins. However, the self‐sorting of artificial helical polymers such as biomacromolecules has rarely been achieved. In this work, single‐handed helical poly(phenyl isocyanide)s bearing pyrene (Py) and naphthalene (Np) probes were prepared, which exhibited interesting self‐sorting properties driven by both helicity and molecular weight (Mn) in solution, solid state, gel, and on the gel surface as well. The polymers with the same helix sense and similar Mn can self‐sort and assemble into well‐defined two‐dimensional smectic architectures and form stable gels in organic solvents. In contrast, mixed polymers with opposite handedness or different Mn were repulsive to each other and did not aggregate. Moreover, the gels of helical polymers with the same handedness and similar Mn can recognize themselves and adhere together to form a gel.

Frontispiece: Racemic Monomer‐Based One‐Handed Helical Polymer Recognizes Enantiomers through Auto‐Evolution of Its Helical Handedness Excess

Frontispiece: Racemic Monomer‐Based One‐Handed Helical Polymer Recognizes Enantiomers through Auto‐Evolution of Its Helical Handedness Excess

Frontispiz: Racemic Monomer‐Based One‐Handed Helical Polymer Recognizes Enantiomers through Auto‐Evolution of Its Helical Handedness Excess

Molekulare Erkennung Im Forschungsartikel auf S. 4675 berichten Eiji Yashima et al. über ein racemisches monomerbasiertes helikales Polymer, das Enantiomere durch Autoevolution seines helikalen Händigkeitsüberschusses erkennt.