Heavy Speckle Noise Research Articles

Tensor Ring Decomposition Guided Dictionary Learning for OCT Image Denoising.

Optical coherence tomography (OCT) is a non-invasive and effective tool for the imaging of retinal tissue. However, the heavy speckle noise, resulting from multiple scattering of the light waves, obscures important morphological structures and impairs the clinical diagnosis of ocular diseases. In this paper, we propose a novel and powerful model known as tensor ring decomposition-guided dictionary learning (TRGDL) for OCT image denoising, which can simultaneously utilize two useful complementary priors, i.e., three-dimensional low-rank and sparsity priors, under a unified framework. Specifically, to effectively use the strong correlation between nearby OCT frames, we construct the OCT group tensors by extracting cubic patches from OCT images and clustering similar patches. Then, since each created OCT group tensor has a low-rank structure, to exploit spatial, non-local, and its temporal correlations in a balanced way, we enforce the TR decomposition model on each OCT group tensor. Next, to use the beneficial three-dimensional inter-group sparsity, we learn shared dictionaries in both spatial and temporal dimensions from all of the stacked OCT group tensors. Furthermore, we develop an effective algorithm to solve the resulting optimization problem by using two efficient optimization approaches, including proximal alternating minimization and the alternative direction method of multipliers. Finally, extensive experiments on OCT datasets from various imaging devices are conducted to prove the generality and usefulness of the proposed TRGDL model. Experimental simulation results show that the suggested TRGDL model outperforms state-of-the-art approaches for OCT image denoising both qualitatively and quantitatively.

Super-efficient Echocardiography Video Segmentation via Proxy- and Kernel-Based Semi-supervised Learning

Automatic segmentation of left ventricular endocardium in echocardiography videos is critical for assessing various cardiac functions and improving the diagnosis of cardiac diseases. It is yet a challenging task due to heavy speckle noise, significant shape variability of cardiac structure, and limited labeled data. Particularly, the real-time demand in clinical practice makes this task even harder. In this paper, we propose a novel proxy- and kernel-based semi-supervised segmentation network (PKEcho-Net) to comprehensively address these challenges. We first propose a multi-scale region proxy (MRP) mechanism to model the region-wise contexts, in which a learnable region proxy with an arbitrary shape is developed in each layer of the encoder, allowing the network to identify homogeneous semantics and hence alleviate the influence of speckle noise on segmentation. To sufficiently and efficiently exploit temporal consistency, different from traditional methods which only utilize the temporal contexts of two neighboring frames via feature warping or self-attention mechanism, we formulate the semi-supervised segmentation with a group of learnable kernels, which can naturally and uniformly encode the appearances of left ventricular endocardium, as well as extracting the inter-frame contexts across the whole video to resist the fast shape variability of cardiac structures. Extensive experiments have been conducted on two famous public echocardiography video datasets, EchoNet-Dynamic and CAMUS. Our model achieves the best performance-efficiency trade-off when compared with other state-of-the-art approaches, attaining comparative accuracy with a much faster speed. The code is available at https://github.com/JingyinLin/PKEcho-Net.

Noise-Powered Disentangled Representation for Unsupervised Speckle Reduction of Optical Coherence Tomography Images.

Due to its noninvasive character, optical coherence tomography (OCT) has become a popular diagnostic method in clinical settings. However, the low-coherence interferometric imaging procedure is inevitably contaminated by heavy speckle noise, which impairs both visual quality and diagnosis of various ocular diseases. Although deep learning has been applied for image denoising and achieved promising results, the lack of well-registered clean and noisy image pairs makes it impractical for supervised learning-based approaches to achieve satisfactory OCT image denoising results. In this paper, we propose an unsupervised OCT image speckle reduction algorithm that does not rely on well-registered image pairs. Specifically, by employing the ideas of disentangled representation and generative adversarial network, the proposed method first disentangles the noisy image into content and noise spaces by corresponding encoders. Then, the generator is used to predict the denoised OCT image with the extracted content features. In addition, the noise patches cropped from the noisy image are utilized to facilitate more accurate disentanglement. Extensive experiments have been conducted, and the results suggest that our proposed method is superior to the classic methods and demonstrates competitive performance to several recently proposed learning-based approaches in both quantitative and qualitative aspects. Code is available at: https://github.com/tsmotlp/DRGAN-OCT.

Extracting Blood Vessels From Full-Field OCT Data of Human Skin by Short-Time RPCA

Recent advances in optical coherence tomography (OCT) lead to the development of OCT angiography to provide additional helpful information for diagnosis of diseases like basal cell carcinoma. In this paper, we investigate how to extract blood vessels of human skin from full-field OCT (FF-OCT) data using the robust principal component analysis (RPCA) technique. Specifically, we propose a short-time RPCA method that divides the FF-OCT data into segments and decomposes each segment into a low-rank structure representing the relatively static tissues of human skin and a sparse matrix representing the blood vessels. The method mitigates the problem associated with the slow-varying background and is free of the detection error that RPCA may have when dealing with FF-OCT data. Both short-time RPCA and RPCA methods can extract blood vessels from FF-OCT data with heavy speckle noise, but the former takes only half the computation time of the latter. We evaluate the performance of the proposed method by comparing the extracted blood vessels with the ground truth vessels labeled by a dermatologist and show that the proposed method works equally well for FF-OCT volumes of different quality. The average F-measure improvements over the correlation-mapping OCT method, the modified amplitude-decorrelation OCT angiography method, and the RPCA method, respectively, are 0.1835, 0.1032, and 0.0458.

Coronary Plaque Boundary Enhancement in IVUS Image by Using a Modified Perona-Malik Diffusion Filter.

We propose a modified Perona-Malik diffusion (PMD) filter to enhance a coronary plaque boundary by considering the conditions peculiar to an intravascular ultrasound (IVUS) image. The IVUS image is commonly used for a diagnosis of acute coronary syndrome (ACS). The IVUS image is however very grainy due to heavy speckle noise. When the normal PMD filter is applied for speckle noise reduction in the IVUS image, the coronary plaque boundary becomes vague. For this problem, we propose a modified PMD filter which is designed in special reference to the coronary plaque boundary detection. It can then not only reduce the speckle noise but also enhance clearly the coronary plaque boundary. After applying the modified PMD filter to the IVUS image, the coronary plaque boundaries are successfully detected further by applying the Takagi-Sugeno fuzzy model. The accuracy of the proposed method has been confirmed numerically by the experiments.

A Modified Watershed Segmentation Method to Segment Renal Calculi in Ultrasound Kidney Images

Segmentation of stones from abdominal ultrasound images is a unique challenge to the researchers because these images have heavy speckle noise and attenuated artifacts. In the previous renal calculi segmentation method, the stones were segmented from the medical ultra sound kidney stone images using Adaptive Neuro Fuzzy Inference System (ANFIS). But, the method lacks in sensitivity and specificity measures. The segmentation method is inadequate in its performance in terms of these two parameters. So, to avoid these drawbacks, a new segmentation method is proposed in this paper. Here, new region indicators and new modified watershed transformation is utilized. The proposed method is comprised of four major processes, namely, preprocessing, determination of outer and inner region indictors, modified watershed segmentation with ANFIS performance. The method is implemented and the results are analyzed in terms of various statistical performance measures. The results show the effectiveness of proposed segmentation method in segmenting the kidney stones and the achieved improvement in sensitivity and specificity measures. Furthermore, the performance of the proposed technique is evaluated by comparing with the other segmentation methods.