Precision determinations of the flavour sector allow the search for indirect new physics signatures. At the forefront of these studies are the determinations of interference of new physics with known $\upDelta F=1$ and $\upDelta F=2$ processes. The ATLAS collaboration explores this area with competitive results measuring the CP violating phase $\phi_s$ from $B^0_s\to J/\psi \phi$ decays and investigating rare $B$ decays with dileptons in the final state with data collected at the Large Hadron Collider. In this paper, the latest ATLAS results relevant for new physics searches in the heavy flavour sector will be discussed.