<h3>Purpose</h3> Gut microbial dysbiosis has been correlated to solid organ and stem cell transplant rejection and death. The HeartCare lab test (CareDx) is increasingly used as routine surveillance for heart transplant (HT) injury and rejection. We investigated whether the microbiome can serve as a noninvasive marker of immune activation and allograft injury among HT recipients. <h3>Methods</h3> We conducted a single-center, prospective cohort study of single organ HT recipients from 2020-2021. Shotgun metagenomic sequencing was performed on peri-HT stool samples. Gut microbial diversity and composition were correlated with the highest abnormal AlloSure or AlloMap obtained within 6 months post-HT. <h3>Results</h3> Thirty-eight HT recipients were included. Stool samples were collected 5.3 ± 7.4 days from HT. The highest HeartCare lab values were measured 72 days (IQR [41, 103]) post-HT. Seven HT recipients had high AlloSure (median 0.2%, IQR [0.14, 0.26]) and 7 had high AlloMap (median 32, IQR [30, 33]) scores. The high and low AlloSure and AlloMap groups had similar within sample microbial i.e. α-diversity. Low AlloSure scores significantly correlated with an increased abundance of phylum <i>Bacteroidetes</i> (34.5% vs 14.4%, p=0.04), and class <i>Bacteroidia</i> (34.3% vs 14.3%, p=0.04); and tended to have lower abundance of the phylum <i>Proteobacteria</i> (5.0% vs 23.3%, p=0.06) (Fig. 1A). Higher AlloMap scores correlated with higher abundance of class <i>Deltaproteobacteria</i> (1.3% vs 0.10%, p=0.04) and order <i>Desulfovibrionales</i> (1.25% vs 0.07%, p=0.02), and a trend towards lower abundance of <i>Firmicutes</i> (36.8% vs 57.3%, p=0.08) (Fig. 1B). Intergroup β-diversity analysis showed clustering based on AlloSure but not AlloMap scores (Fig. 1C). <h3>Conclusion</h3> In our cohort, increased abundance of certain gut microbial taxa in the peri-HT period correlated with increased HeartCare values. The gut microbiome may play a role in immune activation and allograft injury or serve as a biomarker. Further investigation into the mechanistic ties between the gut microbiome and alloimmunity is needed.