Several studies have reported that chronic hepatitis B (CHB) patients with low hepatitis B surface antigen (HBsAg) levels (100 or 10IU/mL) at the cessation of nucleot(s)ide analogs (NA) have a favorable prognosis. In this retrospective study, we evaluated the duration of NA treatment and the factors associated with achieving these low HBsAg levels. We also examined the relationship between HBsAg and hepatitis B core-related antigen (HBcrAg) levels at the time of NA discontinuation and subsequent clinical outcomes. This study included 153 CHB patients who initiated NA therapy at our hospital, received treatment, and were followed up for over 1year. The cumulative incidence rates of achieving low HBsAg levels at 5 and 10years post-NA administration were as follows: 19.0% and 29.2% for HBsAg <100IU/mL, 13.8% and 17.6% for HBsAg <10IU/mL, and 9.5% and 13.5% for HBsAg <0.05IU/mL, respectively. Hepatitis B virus genotypes other than genotype C (hazard ratio [HR] 3.47; p<0.001) and an HBsAg level <1000IU/mL at the start of NA therapy (HR 2.49; p=0.008) were significantly associated with achieving HBsAg levels <100IU/mL. Among 27 patients who discontinued NA therapy, 5 patients with HBsAg levels <100IU/mL and HBcrAg levels <3logU/mL at the time of discontinuation did not experience virological relapse. The cumulative rates of achieving HBsAg levels <100IU/mL were relatively high. Discontinuation of NA may be considered based on HBsAg and HBcrAg levels during the course of NA therapy.