There has been a recent rise in the number of medicinal plant users in Southern Africa, with approximately a million users reported to utilize these plants for various health conditions. Unfortunately, some of these plants are reportedly endangered and facing extinction due to harvesting pressure. In addition, climate change is likely to negatively affect the geographical distribution of these medicinal plants. In the current study, future greenhouse gas emission scenarios of the representative concentration pathways, RCP2.6 and RCP8.5, for future projections to 2050 and 2080 were used to simulate the effect of climate change on three medicinal plants’ (Aloe ferox, Bowiea volubilis, and Dioscorea elephantipes) distribution in South Africa. We studied these plant species as the International Union for Conservation of Nature stated that A. ferox is currently of least concern in South Africa, while B. volubilis and D. elephantipes are categorised as declining and vulnerable, respectively. Specifically, we utilised a species distribution model (i.e., the maximum entropy: MaxEnt) to investigate the effect of climate change on the future spatial distribution of medicinal plants in South Africa. In 2050 and 2080, under both RCP scenarios, the suitable habitat of the studied plant species will reduce in the country’s northern parts. Specifically, the habitat for D. elephantipes will totally disappear in the country’s northern parts. However, there will be slight additions of suitable habitats for the species in the country’s southern parts. Model validation indicated that the area under curve (AUC) for A. ferox was 0.924 ± 0.004, while for B. volubilis and D. elephantipes it was 0.884 ± 0.050 and 0.944 ± 0.030, respectively. Using the results from this study, there is a need for the long-term in situ and ex situ conservation of these medicinal plants. The results of the present study could guide the development of effective and efficient policies and strategies for managing and conserving medicinal plants in South Africa.
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