Harmful Algal Blooms Research Articles

Deciphering Multi‐Scale Submarine Groundwater Discharge in a Typical Eutrophic Bay

AbstractAs a significant source of nutrients and other components into the coastal ocean, submarine groundwater discharge (SGD) is a combination of multiple spatial‐temporal scale processes, including fresh terrestrial groundwater (FSGD), recirculating seawater (RSGD), and porewater exchange (PEX). Quantifying the different types of SGD is extremely important for understanding the coastal biogeochemical cycles of various materials. The green tide bloom in the southern Yellow Sea (China) has attracted increasing attention during the past decade. Haizhou Bay is thought to be an important green tide proliferating area, but the source of an apparent high supply of nutrients has not been identified yet. We report here on our investigations of the distribution patterns of Ra and Rn isotopes in groundwater and seawater in Haizhou Bay. By solving a combined mass balance for 224Ra, 223Ra, 226Ra, and 222Rn, we estimated that the bay's water residence time is 28.8 days, FSGD is highest at 3.6 cm d−1, RSGD is 2.7 cm d−1, and PEX is lowest at 0.6 cm d−1. The total SGD into Haizhou Bay is estimated at 9.40 × 107 m3 d−1 (6.9 cm d−1), about 12 times that of the local river discharge into the bay. SGD‐derived nutrients are shown to play an important role when considered among all known nutrient sources. Our results suggest that dissolved inorganic nitrogen (DIN) and silicate (DSi) are transported by SGD mainly via FSGD. We also note that the phosphorus (DIP) budget is heavily influenced by RSGD.

Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya.

The Winam Gulf (Kenya) is frequently impaired by cyanobacterial harmful algal blooms (cHABs) due to inadequate wastewater treatment and excess agricultural nutrient input. While phytoplankton in Lake Victoria have been characterized using morphological criteria, our aim is to identify potential toxin-producing cyanobacteria using molecular approaches. The Gulf was sampled over two successive summer seasons, and 16S and 18S ribosomal RNA gene sequencing was performed. Additionally, key genes involved in production of cyanotoxins were examined by quantitative PCR. Bacterial communities were spatially variable, forming distinct clusters in line with regions of the Gulf. Taxa associated with diazotrophy were dominant near Homa Bay. On the eastern side, samples exhibited elevated cyrA abundances, indicating genetic capability of cylindrospermopsin synthesis. Indeed, near the Nyando River mouth in 2022, cyrA exceeded 10 million copies L-1 where there were more than 6000 Cylindrospermopsis spp. cells mL-1. In contrast, the southwestern region had elevated mcyE gene (microcystin synthesis) detections near Homa Bay where Microcystis and Dolichospermum spp. were observed. These findings show that within a relatively small embayment, composition and toxin synthesis potential of cHABs can vary dramatically. This underscores the need for multifaceted management approaches and frequent cyanotoxin monitoring to reduce human health impacts.

A framework for identifying factors controlling cyanobacterium Microcystis flos-aquae blooms by coupled CCM-ECCM Bayesian networks.

Cyanobacterial blooms in freshwater sources are a global concern, and gaining insight into their causes is crucial for effective resource management and control. In this study, we present a novel computational framework for the causal analysis of cyanobacterial harmful algal blooms (cyanoHABs) in Lake Kinneret. Our framework integrates Convergent Cross Mapping (CCM) and Extended CCM (ECCM) causal networks with Bayesian Network (BN) models. The constructed CCM-ECCM causal networks and BN models unveil significant interactions among factors influencing cyanoHAB formation. These interactions have been validated by domain experts and supported by evidence from peer-reviewed publications. Our findings suggest that Microcystis flos-aquae levels are influenced not only by community structure but also by ammonium, phosphate, oxygen, and temperature levels in the weeks preceding bloom occurrences. We demonstrated a non-parametric computational framework for causal analysis of a multivariate ecosystem. Our framework offers a more comprehensive understanding of the underlying mechanisms driving M. flos-aquae blooms in Lake Kinneret. It captures complex interactions and provides an explainable prediction model. By considering causal relationships, temporal dynamics, and joint probabilities of environmental factors, the proposed framework enhances our understanding of cyanoHABs in Lake Kinneret.

Geographic Characteristics and Meteorological Factors Dominate the Variation of Chlorophyll‐a in Lakes and Reservoirs With Higher TP Concentrations

AbstractNutrients such as phosphorus and nitrogen lead to extensive growth of harmful algae in lakes and reservoirs, which results in eutrophication. The driving mechanism of primary productivity change in lakes and reservoirs at a wide spatial and temporal scale remains largely unknown. We establish a water quality database using a stacking machine learning model, including monthly chlorophyll‐a (Chl‐a), total nitrogen (TN) and phosphorus (TP) concentrations in 255 lakes and 332 reservoirs from 1980 to 2018. We find an increase in the number of lakes and reservoirs at risk of algal blooms, with approximately 2.66% exhibiting Chl‐a concentrations exceeding 30 μg L−1 by 2018. Variations in Chl‐a concentrations were not entirely synchronized at the individual and regional levels with TN and TP concentrations, or their stoichiometric ratios, as estimated by a hierarchical linear model spanning 1980 to 2018. Further, we discovered unexpected effects of geographical features (i.e., latitude, longitude, and slope) and meteorological factors (i.e., air temperature) on Chl‐a concentrations in the lakes and reservoirs with higher TP concentrations (>0.041 mg L−1 for lakes and >0.027 mg L−1 for reservoirs), through the use of multiple regression trees and structural equation model analysis. Our findings underscore the importance of (a) implementing flexible nutrient pollution control approaches based on nutrient ecoregions that consider geographical variations, and (b) developing mitigation and adaptation strategies to address the uncertain risks posed by climate change in the prevention and control of eutrophication in lakes and reservoirs.

Immediate Impact of the 2021 Harmful Algal Bloom in Southeast Hokkaido on the Rocky Intertidal Benthic Community and Its Spatial Variation

There has been a limited number of studies on the effects of harmful algal blooms (HABs) on natural rocky intertidal ecosystems. From mid-September to early November 2021, an unprecedented HAB caused by Karenia selliformis hit the Pacific coast of southeast Hokkaido, Japan, for the first time, causing massive mortalities among marine organisms. To clarify the immediate impacts of the HAB on the abundance of 10 rocky intertidal species in four functional groups (macroalgae, sessile invertebrates, molluscan grazers, and molluscan carnivores), we focused on two questions: (1) How did the HAB affect the abundance of each species differently at the regional scale? and (2) How did the impacts of the HAB on the abundance of each functional groups vary spatially, and was the spatial variation of the HAB impacts related to the spatial distribution of the cell density of HAB species? To study these issues, we compared census data for 17 years before the HAB and within one month after it for five shores on the southeast coast of Hokkaido. The results showed that two macroalgae species and all three molluscan grazer species declined significantly after the HAB. Moreover, the decrease in molluscan grazers was significantly correlated with cell density. These results suggest that the impacts of the HAB in southeast Hokkaido on the abundance of rocky intertidal organisms are highly variable depending on species and locality, presumably because of differences in species-specific tolerances to HAB toxins and the spatial variation in the density of the HAB organisms.

Estimating the risks of exposure to harmful algal toxins among Scottish harbour seals

Harmful algal bloom (HAB) toxins consumed by marine predators through fish prey can be lethal but studies on the resulting population consequences are lacking. Over the past approximately 20 years there have been large regional declines in some harbour seal populations around Scotland. Analyses of excreta (faeces and urine from live and dead seals and faecal samples from seal haulout sites) suggest widespread exposure to toxins through the ingestion of contaminated prey. A risk assessment model, incorporating concentrations of the two major HAB toxins found in seal prey around Scotland (domoic acid (DA), and saxitoxins (STX)), the seasonal persistence of the toxins in the fish and the foraging patterns of harbour seals were used to estimate the proportion of adults and juveniles likely to have ingested doses above various estimated toxicity thresholds. The results were highly dependent on toxin type, persistence, and foraging regime as well as age class, all of which affected the proportion of exposed animals exceeding toxicity thresholds. In this preliminary model STX exposure was unlikely to result in mortalities. Modelled DA exposure resulted in doses above an estimated lethal threshold of 1900 µg/kg body mass affecting up to 3.8 % of exposed juveniles and 5.3 % of exposed adults. Given the uncertainty in the model parameters and the limitations of the data these conclusions should be treated with caution, but they indicate that DA remains a potential factor involved in the regional declines of harbour seals. Similar risks may be experienced by other top predators, including small cetaceans and seabirds that feed on similar prey in Scottish waters.

Dynamics of green macroalgal micro-propagules and the influencing factors in the southern Yellow Sea, China

Micro-propagules (banks of microscopic forms) play important roles in the expansion of green tides, which are spreading on eutrophic coasts worldwide. In particular, large-scale green tides (Yellow Sea Green Tide, YSGTs) have persisted in the Yellow Sea for over 15 years, but the dynamics and functions of micro-propagules in their development remain unclear. In the present study, year-round field surveys were conducted to identify the reservoirs and investigate the persistence mechanisms and associated biotic and abiotic factors driving the temporal and spatial variations of micro-propagules. Micro-propagules in the southern Yellow Sea (SYS) showed evident spatial heterogeneity in terms of seasonal patterns and major influencing factors. Offshore of the SYS, the micro-propagule population underwent ephemeral expansion along with a large-scale bloom of floating Ulva algae in late spring and early summer. The Subei Shoal, particularly the sediments in the central raft region, had the highest micro-propagule abundance (MA) and was a major reservoir. The pronounced seasonal variation of MA in the Subei Shoal was primarily associated with the attached Ulva algae on Neopyropia aquaculture rafts. Vast aquaculture rafts provided essential substrates for micro-propagules to complete their life cycle and replenish the seed bank, thereby sustaining persistent YSGTs. It implied that habitat modification has pronounced ecological impacts on this intertidal muddy flat. The unique environmental conditions (enriched nutrients, esp. nitrate, favourable seawater temperatures in spring, and strong tidal mixing) facilitated the abundance, seasonal variation and recruitment of micro-propagules in the Subei Shoal. Given the current mitigation measures implemented in the raft region, further research is required to monitor and investigate the physiological and ecological responses of micro-propagule populations to the complex hydrobiological, geochemical, and physical matrices.

Estimation Method of Chlorophyll Concentration Distribution Based on UAV Aerial Images Considering Turbid Water Distribution in a Reservoir

The observation of the phytoplankton distribution with a high spatiotemporal resolution is necessary to track the nutrient sources that cause algal blooms and to understand their behavior in response to hydraulic phenomena. Photography from UAVs, which has an excellent temporal and spatial resolution, is an effective method to obtain water quality information comprehensively. In this study, we attempted to develop a method for estimating the chlorophyll concentration from aerial images using machine learning that considers brightness correction based on insolation and the spatial distribution of turbidity evaluated by satellite image analysis. The reflectance of harmful algae bloom (HAB) was different from that of phytoplankton seen under normal conditions; so, the images containing HAB were the causes of error in the estimation of the chlorophyll concentration. First, the images when the bloom occurred were extracted by the discrimination with machine learning. Then, the other images were used for the regression of the concentration. Finally, the coefficient of determination between the estimated chlorophyll concentration when no bloom occurred by the image analysis and the observed value reached 0.84. The proposed method enables the detailed depiction of the spatial distribution of the chlorophyll concentration, which contributes to the improvement in water quality management in reservoirs.

Toward a Brighter Future: Enhanced Sustainable Methods for Preventing Algal Blooms and Improving Water Quality

This comprehensive review explores the escalating challenge of nutrient enrichment in aquatic ecosystems, spotlighting the dire ecological threats posed by harmful algal blooms (HABs) and excessive particulate organic matter (POM). Investigating recent advancements in water treatment technologies and management strategies, the study emphasizes the critical need for a multifaceted approach that incorporates physical, chemical, and biological methods to effectively address these issues. By conducting detailed comparative analyses across diverse aquatic environments, it highlights the complexities of mitigating HABs and underscores the importance of environment-specific strategies. The paper advocates for sustainable, innovative solutions and international cooperation to enhance global water quality and ecosystem health. It calls for ongoing advancement, regular monitoring, and comprehensive research to adapt to emerging challenges, thus ensuring the preservation of aquatic biodiversity and the protection of communities reliant on these vital resources. The necessity of integrating technological innovation, ecological understanding, and global cooperation to safeguard aquatic ecosystems for future generations is paramount.

The need for innovations to secure the future of artisanal mussel farming in the coastal sea of the Gulf of Trieste (Slovenia)

Mariculture along the Slovene coastline is mainly mussel culture operated as a family business; in one case, it is combined with sea bass farming. It started in the early 70 s with cultivation of Mediterranean mussels, while today, the two largest producers incorporate the cultivation of Venus clams and oysters as species with higher economic value on the market. Currently, all mussels and clams produced in Slovenia are sold in the Slovenian, Italian, Croatian and French markets. The production of Mediterranean mussels (Mytilus galloprovincialis) has increased steadily, with the main obstacles being a limited area for cultivation, occasional harmful algal blooms, predation by gilthead seabream and flatworms. In addition, more recent summer heatwaves negatively affected mussel production when seawater reached high temperatures at the thermal limits unsuitable for mussel growth. This study aimed to collect first-hand information about the current mussel production technology, processes and needs to identify opportunities for innovations that could benefit the entire sector (increased knowledge, production yield, reduced workload and effort with administrative issues). The study was based on a semi-structured questionnaire with the owners of mussel farms. Analysis of the questionnaire was supplemented with current knowledge from the field and provided comprehensive insight into a small sector of mussel farming along the Slovenian coast and its possible development in the future.

Rhodobacteraceae are key players in microbiome assembly of the diatom Asterionellopsis glacialis.

Most, if not all, microeukaryotic organisms harbor an associated microbial community, termed the microbiome. The microscale interactions that occur between these partners have global-scale consequences, influencing marine primary productivity, carbon cycling, and harmful algal blooms to name but a few. Over the last decade, there has been a growing interest in the study of phytoplankton microbiomes, particularly within the context of bloom dynamics. However, long-standing questions remain regarding the process of phytoplankton microbiome assembly. The significance of our research is to tease apart the mechanism of microbiome assembly with a particular focus on identifying bacterial taxa, which may not merely be symbionts but architects of the phytoplankton microbiome. Our results strengthen the understanding of the ecological mechanisms that underpin phytoplankton-bacteria interactions in order to accurately predict marine ecosystem responses to environmental perturbations.

The survival, gene expression, and DNA methylation of Paralichthys olivaceus impacted by the decay of green tide and bacterial infection in both laboratory and field simulation experiments

The recurring appearance of Ulva prolifera green tides has become a pressing environmental issue, especially for marine transportation, tourism, and aquaculture in the stage of decomposition. An abundance of decaying U. prolifera leads to water acidification, hypoxia and pathogenic microorganism proliferation, threatening marine germplasm resources, particularly benthic organisms with weak escape ability. Epigenetic modification is considered to be one of the molecular mechanisms involved in the plastic adaptive response to environmental changes. However, few studies concerning the specific impact of decaying green tide on benthic animals at the epigenetic level. In this study, decomposing algal effluents of U. prolifera, sediments containing uncorrupted U. prolifera, pathogenic microorganism were considered as impact factors, to reveal the effect of decaying U. prolifera on marine economic benthic species, Paralichthys olivaceus, using both field and laboratory simulation experiments. Field simulation experiment showed higher mortality rates and serious histopathological damage than the laboratory simulation experiment. And both the decaying U. prolifera and the sediment containing U. prolifera were harmful to P. olivaceus. Genome-wide DNA methylation and transcription correlation analyses showed that the response of P. olivaceus to green tide stress and bacterial infection was mainly mediated by immune signaling pathways such as PI3K-Akt signaling pathway. DNA methylation regulates the expression of immune-related genes involved in the PI3K-Akt signaling pathway, which enables P. olivaceus to adapt to the adverse environmental stresses by resisting apoptosis. In summary, this research analyzed the potential role of P. olivaceus in decaying U. prolifera, which is of great significance for understanding the impact of decaying green tide on marine commercial fish and also provides some theoretical guidance for the proliferation and release of fish seedlings.

The recent disappearance of a persistent Planktothrix bloom: Characterization of a regime shift in the phytoplankton of Sandusky Bay (USA)

Sandusky Bay is the drowned mouth of the Sandusky River in the southwestern portion of Lake Erie. The bay is a popular recreation location and a regional source for drinking water. Like the western basin of Lake Erie, Sandusky Bay is known for being host to summer cyanobacterial harmful algal blooms (cHABs) year after year, fueled by runoff from the predominantly agricultural watershed and internal loading of legacy nutrients (primarily phosphorus). Since at least 2003, Sandusky Bay has harbored a microcystin-producing bloom of Planktothrix agardhii, a species of filamentous cyanobacteria that thrives in low light conditions. Long-term sampling (2003–2018) of Sandusky Bay revealed regular Planktothrix-dominated blooms during the summer months, but in recent years (2019–2022), 16S rRNA gene community profiling revealed that Planktothrix has largely disappeared. From 2017–2022, microcystin decreased well below the World Health Organization (WHO) guidelines. Spring TN:TP ratios increased in years following dam removal, yet there were no statistically significant shifts in other physicochemical variables, such as water temperature and water clarity. With the exception of the high bloom of Planktothrix in 2018, there was no statistical difference in chlorophyll during all other years. Concurrent with the disappearance of Planktothrix, Cyanobium spp. have become the dominant cyanobacterial group. The appearance of other potential toxigenic genera (i.e., Aphanizomenon, Dolichospermum, Cylindrospermopsis) may motivate monitoring of new toxins of concern in Sandusky Bay. Here, we document the regime shift in the cyanobacterial community and propose evidence supporting the hypothesis that the decline in the Planktothrix bloom was linked to the removal of an upstream dam on the Sandusky River.

Microbial community diversity during algal inhibition using slow-release microcapsules of tea polyphenols

Harmful algal blooms (HABs) resulting from eutrophication pose a major threat to ecosystems and human health, necessitating effective control measures. Allelochemicals have shown their importance in slowing down algal proliferation due to their proven efficacy and low ecological impacts. In this study, allelopathy tea polyphenols (TPs) and β-cyclodextrin were combined to prepare slow-release algicidal microcapsules, and the diversity of microbial community in the algal inhibition process was analyzed. Results showed that TP slow-release microcapsules had strong algicidal activity. When against Microcystis aeruginosa within 20 d, their constant inhibitory rate was up to 99% compared to the control group. Microbial diversity decreased with an increase in algae density, and the species richness and diversity of algae increased under the stress of TP slow-release microcapsules. The redundancy analysis showed that the environmental factors with impacts on the abundance and diversity of bacterial communities in descending order were dissolved oxygen, pH, and temperature. This study provides a theoretical basis for the application of TP slow-release microcapsules to actual water.

From micro to mesoscale: Understanding the influence of macroalgal communities on Ostreopsis Schmidt blooms

Harmful Algal Blooms (HABs) are increasing in temperate areas, and the growth rates of benthic harmful dinoflagellates may be favoured in the context of global climate change. Benthic dinoflagellates, including species belonging to the Ostreopsis Schmidt genus, are known to develop on the surface of macroalgae and different macroalgal morphotypes and communities could host higher or lower cell abundances. The physical structure of the macroalgal substrate at the small scale (cm, microhabitat scale) and the structural complexity of the macroalgal community at the medium scale (few m, mesohabitat scale) could play a relevant role in bloom facilitation: the hypothesis that Ostreopsis species could be associated with macroalgal turfs and shrubs, structurally less complex communities than canopy-forming macroalgae, is especially under discussion and, if confirmed, could link bloom occurrence to regime shifts in temperate ecosystems. The present study, performed in two locations of the Ligurian Sea (Rochambeau, France and Vernazzola, Italy) aimed at understanding marine vegetation's role at the micro and mesohabitat scales in controlling the distribution and abundance of Ostreopsis. The abundance of the microalgal cells was quantified at different spatial scales, from cm to a few m, on different macroalgal species and communities, including artificial substrates, to tease apart the micro and mesohabitat effects. The results obtained show a high spatio-temporal variability, potentially hiding habitat-related patterns. The substrate's preferences diminish when cell abundances are very high, as in the case of Rochambeau, while in presence of moderate cell abundances as in Vernazzola or the first phases of blooms, it is possible to appreciate differences in abundances among substrates (in our study, Dictyota fasciola (Roth) Lamouroux supporting higher abundances). Our results open new research topics such as the study of blooms at a larger scale (macrohabitat) and testing different sampling methods to standardise the cells' abundances independently on the substrate.

Distribution of Ulva macroalgae before and after the outbreak of the Yellow Sea green tide in aquaculture ponds and rivers nearshore Jiangsu, China

Green tide caused by the extensive proliferation of Ulva macroalgae in the Yellow Sea has been continuously occurring for 17 years. Previous studies indicate the Neopyropia aquaculture area in Jiangsu to be the main source of green tides in the Southern Yellow Sea. However, whether there are additional supplementary sources for the green tide in the Yellow Sea remains to be studied. This study conducted sampling of Ulva macroalgae in 14 aquaculture ponds and rivers nearshore Jiangsu in February and November in 2022. The molecular biology identification of samples through ITS and 5S indicates that the Ulva macroalgae in aquaculture ponds and rivers are composed of Ulva prolifera, Ulva linza, Ulva simplex, Ulva torta, Ulva flexuosa, and Ulva meridionalis. The results of micropropagules indicate that the abundance of micropropagules in aquaculture ponds is significantly higher than in rivers. In both February and November, the points with the highest abundance of micropropagules were located in aquaculture ponds, reaching 2090 inds L−1 and891 inds L−1, respectively. This study found that before and after the outbreak of green tide, the dominant species of green tide outbreak,5S-II U. prolifera,existed in aquaculture ponds and rivers nearshore Jiangsu. 5S-II U. prolifera in aquaculture ponds and rivers may have a potential impact on the outbreak of green tide in the Yellow Sea.

An investigation of cyanobacteria, cyanotoxins and environmental variables in selected drinking water treatment plants in New Jersey

Harmful Algal Blooms (HAB) have the potential to impact human health primarily through their possible cyanotoxins production. While conventional water treatments can result in the removal of unlysed cyanobacterial cells and low levels of cyanotoxins, during severe HAB events, cyanotoxins can break through and can be present in the treated water due to a lack of adequate toxin treatment. The objectives of this study were to assess the HAB conditions in drinking water sources in New Jersey and investigate relationships between environmental variables and cyanobacterial communities in these drinking water sources. Source water samples were collected monthly from May to October 2019 and analyzed for phytoplankton and cyanobacterial cell densities, microcystins, cylindrospermopsin, Microcystis 16S rRNA gene, microcystin-producing mcyB gene, Raphidiopsis raciborskii-specific rpoC1 gene, and cylindrospermopsin-producing pks gene. Water quality parameters included water temperature, pH, dissolved oxygen, specific conductance, fluorescence of phycocyanin and chlorophyll, chlorophyll-a, total suspended solids, total dissolved solids, dissolved organic carbon, total nitrogen, ammonia, and total phosphorus. In addition to source waters, microcystins and cylindrospermopsin were analyzed for treated waters. The results showed all five selected New Jersey source waters had high total phosphorus concentrations that exceeded the established New Jersey Surface Water Quality Standards for lakes and rivers. Commonly found cyanobacteria were identified, such as Microcystis and Dolichospermum. Site E was the site most susceptible to HABs with significantly greater HAB variables, such as extracted phycocyanin, fluorescence of phycocyanin, cyanobacterial cell density, microcystins, and Microcystis 16S rRNA gene. All treated waters were undetected with microcystins, indicating treatment processes were effective at removing toxins from source waters. Results also showed that phycocyanin values had a significantly positive relationship with microcystin concentration, copies of Microcystis 16S rRNA and microcystin-producing mcyB genes, suggesting these values can be used as a proxy for HAB monitoring. This study suggests that drinking water sources in New Jersey are vulnerable to forthcoming HAB. Monitoring and management of source waters is crucial to help safeguard public health.

Changes in the limiting nutrients and dominant phytoplankton communities of three major European rivers: Response to catchment lithologies and human activities

Catchment lithologies and human activities can cause variations in riverine carbon (C), nitrogen (N), and phosphorus (P) loads, and the ratio of these nutrients may affect the primary productivity of rivers and their phytoplankton communities. We conducted a comparative study of biogeochemical variations in three major European rivers—the Rhine, Danube, and Seine—which reveals the impacts of different carbonate outcrops and human impacts (agricultural activities and sewage input) on the changes in the limiting nutrients and phytoplankton community compositions of flowing water systems. N limitation was observed in the Rhine and Danube owing to their low average NO3– loads (4.04–6.45 mg/L). Although the extensive outcrops of carbonate rocks in the Seine catchment result in high average HCO3– concentrations of ∼ 4.68 mmol/L, the elevated inorganic C input did not match the high average NO3– loads (∼19.38 mg/L), driven by intensive agricultural activity and urban sewage input, demonstrating a potential C limitation on productivity. Our results show that the productivity of the Seine River, determined by the chlorophyll-a concentration, was significantly related to the dissolved inorganic carbon (DIC) concentration (coefficient of determination: R2 = 0.68, P < 0.05). Our results demonstrate that changes in DIC content can significantly alter the dominant phytoplankton species in the water column. The high inputs of DIC and aqueous CO2(aq) to the Seine lead to Bacillariophyta proportions that are 3.96–8.81 % and 19.87–22.56 % higher than those of the Rhine and Danube in the wet and dry seasons, respectively. This can be explained by the difference in the efficiency of carbon concentrating mechanisms (CCMs) among phytoplankton species. Therefore, to mitigate river eutrophication and improve the quality of the aquatic environment, we suggest that future water–carbon management in the flowing water systems with abundant nutrients should consider C-limitation alleviation and its potential effect for reducing the abundance of harmful algae.

From genes to toxins: Profiling Prymnesium parvum during a riverine harmful algal bloom

Blooms of Prymnesium parvum, a unicellular alga globally distributed in marine and brackish environments, frequently result in massive fish kills due to the production of toxins called prymnesins by this haptophyte. In August 2022, a harmful algal bloom (HAB) of this species occurred in the lower Oder River (Poland and Germany), which caused mass mortalities of fish and other organisms. This HAB was linked to low discharge of the Oder and mining activities that caused a significant increase in salinity. In this context, we report on the molecular detection and screening of this haptophyte and its toxins in environmental samples and clonal cultures derived thereof. Both conventional PCR and droplet digital PCR assays reliably detected P. parvum in environmental samples. eDNA metabarcoding using the V4 region of the 18S rRNA gene revealed a single Prymnesium sequence variant, but failed to identify it to species level. Four clonal cultures established from environmental samples were unambiguously identified as P. parvum by molecular phylogenetics (near full-length 18S rRNA gene) and light microscopy. Phylogenetic analysis (ITS1–5.8S-ITS2 marker region) placed the cultured phylotype within a clade containing other P. parvum strains known to produce B-type prymnesins. Toxin-screening of the cultures using liquid chromatography-electrospray ionization - time of flight mass spectrometry identified B-type prymnesins, which were also detected in extracts of filter residues from water samples of the Oder collected during the HAB. Overall, our investigation provides a detailed characterization of P. parvum, including their prymnesins, during this HAB in the Oder River, contributing valuable insights into this ecological disaster. In addition, the droplet digital PCR assay established here will be useful for future monitoring of low levels of P. parvum on the Oder River or any other salt-impacted and brackish water bodies.

Diversity and biogeography of dinoflagellates in the Kuroshio region revealed by 18S rRNA metabarcoding

Dinoflagellate is one of the most diverse and pervasive protists and a fundamental player in the marine food web dynamics and biogeochemical cycles. While possessing different nutritional strategies from purely autotrophy or heterotrophy to mixotrophy, some of them are also known as toxic harmful algal bloom (HAB) formers over the world. Despite their ordinariness, their diversity and biogeography are understudied in the open ocean compared with coastal region. As the first metabarcoding survey covering the Kuroshio current region from the offshore of Okinawa to the south of Honshu, we investigated the distribution of free-living dinoflagellates using the hypervariable V4 and V9 regions on 18S rRNA and their relation to ambient environments influenced by this oligotrophic but highly productive current in the northwest Pacific Ocean. We observed community structures differentiated by depth and nutrient concentrations. Most species annotated are autotrophic or mixotrophic and had a distribution correlated to warmer surface water, whereas heterotrophic species correlated to high nutrient levels or deeper layer. Our results also confirmed the overall high genetic diversity of dinoflagellates that decreased with depth and onshore. Most species present at stations offshore, and the relative abundance of HAB assemblages was lower at nutrient-rich stations on the continental shelf than stations influenced by the Kuroshio current, exhibiting the role of the Kuroshio transporting dinoflagellates including HAB species. To fully understand the dynamics of dinoflagellate communities in marine ecosystems, further seasonal monitoring is foremost for correlating dinoflagellates and environmental factors while completing the reference genomic database.